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PDB: 41 results

5G5X
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BU of 5g5x by Molmil
CBS domain tandem of site-2 protease from Archaeoglobus fulgidus in complex with llama Nanobody - nucleotide-bound form
Descriptor: ADENOSINE MONOPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, NANOBODY, ...
Authors:Schacherl, M, Baumann, U.
Deposit date:2016-06-09
Release date:2017-05-24
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystallographic and biochemical characterization of the dimeric architecture of site-2 protease.
Biochim. Biophys. Acta, 1859, 2017
5G5R
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BU of 5g5r by Molmil
CBS domain tandem of site-2 protease from Archaeoglobus fulgidus in complex with llama Nanobody - apo form
Descriptor: NANOBODY, SITE-2 PROTEASE, SULFATE ION
Authors:Schacherl, M, Baumann, U.
Deposit date:2016-06-02
Release date:2017-05-24
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystallographic and biochemical characterization of the dimeric architecture of site-2 protease.
Biochim. Biophys. Acta, 1859, 2017
5A0R
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BU of 5a0r by Molmil
Product peptide-bound structure of metalloprotease Zmp1 variant E143A from Clostridium difficile
Descriptor: GLYCEROL, PRODUCT PEPTIDE, ZINC ION, ...
Authors:Schacherl, M, Pichlo, C, Neundorf, I, Baumann, U.
Deposit date:2015-04-22
Release date:2015-08-05
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.251 Å)
Cite:Structural Basis of Proline-Proline Peptide Bond Specificity of the Metalloprotease Zmp1 Implicated in Motility of Clostridium Difficile.
Structure, 23, 2015
8P7X
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BU of 8p7x by Molmil
Mycoplasma pneumoniae 70S ribosome in chloramphenicol-treated cells
Descriptor: 1,4-DIAMINOBUTANE, 16S ribosomal RNA, 23S ribosomal RNA, ...
Authors:Schacherl, M, Xue, L, Spahn, C.M.T, Mahamid, J.
Deposit date:2023-05-31
Release date:2024-11-20
Method:ELECTRON MICROSCOPY (3.03 Å)
Cite:Structural insights into context-dependent inhibitory mechanisms of chloramphenicol in cells
Nat.Struct.Mol.Biol., 2024
8P8B
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BU of 8p8b by Molmil
Mycoplasma pneumoniae large ribosomal subunit in chloramphenicol-treated cells
Descriptor: 1,4-DIAMINOBUTANE, 16S ribosomal RNA, 23S ribosomal RNA, ...
Authors:Schacherl, M, Xue, L, Spahn, C.M.T, Mahamid, J.
Deposit date:2023-05-31
Release date:2024-11-20
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Structural insights into context-dependent inhibitory mechanisms of chloramphenicol in cells
Nat.Struct.Mol.Biol., 2024
8P6P
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BU of 8p6p by Molmil
Mycoplasma pneumoniae small ribosomal subunit in chloramphenicol-treated cells
Descriptor: 1,4-DIAMINOBUTANE, 16S ribosomal RNA, 23S ribosomal RNA, ...
Authors:Schacherl, M, Xue, L, Spahn, C.M.T, Mahamid, J.
Deposit date:2023-05-27
Release date:2024-11-20
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Structural insights into context-dependent inhibitory mechanisms of chloramphenicol in cells
Nat.Struct.Mol.Biol., 2024
5A0S
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BU of 5a0s by Molmil
Apo-structure of metalloprotease Zmp1 variant E143A from Clostridium difficile
Descriptor: ZINC ION, ZINC METALLOPROTEASE ZMP1
Authors:Schacherl, M, Pichlo, C, Neundorf, I, Baumann, U.
Deposit date:2015-04-22
Release date:2015-08-05
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.56 Å)
Cite:Structural Basis of Proline-Proline Peptide Bond Specificity of the Metalloprotease Zmp1 Implicated in Motility of Clostridium Difficile.
Structure, 23, 2015
5A0P
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BU of 5a0p by Molmil
Apo-structure of metalloprotease Zmp1 from Clostridium difficile
Descriptor: ZINC ION, ZINC METALLOPROTEASE ZMP1
Authors:Schacherl, M, Pichlo, C, Neundorf, I, Baumann, U.
Deposit date:2015-04-22
Release date:2015-08-05
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.398 Å)
Cite:Structural Basis of Proline-Proline Peptide Bond Specificity of the Metalloprotease Zmp1 Implicated in Motility of Clostridium Difficile.
Structure, 23, 2015
5A0X
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BU of 5a0x by Molmil
Substrate peptide-bound structure of metalloprotease Zmp1 variant E143AY178F from Clostridium difficile
Descriptor: SUBSTRATE PEPTIDE, ZINC ION, ZINC METALLOPROTEASE ZMP1
Authors:Schacherl, M, Pichlo, C, Neundorf, I, Baumann, U.
Deposit date:2015-04-23
Release date:2015-08-05
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural Basis of Proline-Proline Peptide Bond Specificity of the Metalloprotease Zmp1 Implicated in Motility of Clostridium Difficile.
Structure, 23, 2015
8P7Y
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BU of 8p7y by Molmil
Mycoplasma pneumoniae 70S ribosome with second S4 protein on large subunit
Descriptor: 1,4-DIAMINOBUTANE, 16S ribosomal RNA, 23S ribosomal RNA, ...
Authors:Schacherl, M, Xue, L, Spahn, C.M.T, Mahamid, J.
Deposit date:2023-05-31
Release date:2024-11-20
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Structural insights into context-dependent inhibitory mechanisms of chloramphenicol in cells
Nat.Struct.Mol.Biol., 2024
8P8W
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BU of 8p8w by Molmil
Mycoplasma pneumoniae di-ribosome in chloramphenicol-treated cells (following 70S)
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Schacherl, M, Xue, L, Spahn, C.M.T, Mahamid, J.
Deposit date:2023-06-02
Release date:2024-11-20
Method:ELECTRON MICROSCOPY (8.7 Å)
Cite:Structural insights into context-dependent inhibitory mechanisms of chloramphenicol in cells
Nat.Struct.Mol.Biol., 2024
8P8V
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BU of 8p8v by Molmil
Mycoplasma pneumoniae di-ribosome in chloramphenicol-treated cells (leading 70S)
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Schacherl, M, Xue, L, Spahn, C.M.T, Mahamid, J.
Deposit date:2023-06-02
Release date:2024-11-20
Method:ELECTRON MICROSCOPY (8.7 Å)
Cite:Structural insights into context-dependent inhibitory mechanisms of chloramphenicol in cells
Nat.Struct.Mol.Biol., 2024
4BG9
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BU of 4bg9 by Molmil
Apo form of a putative sugar kinase MK0840 from Methanopyrus kandleri (orthorhombic space group)
Descriptor: ACETATE ION, CHLORIDE ION, POTASSIUM ION, ...
Authors:Schacherl, M, Waltersperger, S.M, Baumann, U.
Deposit date:2013-03-24
Release date:2013-11-27
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.902 Å)
Cite:Structural Characterization of the Ribonuclease H-Like Type Askha Superfamily Kinase Mk0840 from Methanopyrus Kandleri
Acta Crystallogr.,Sect.D, 69, 2013
4BGA
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BU of 4bga by Molmil
Nucleotide-bound open form of a putative sugar kinase MK0840 from Methanopyrus kandleri
Descriptor: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, POTASSIUM ION, ...
Authors:Schacherl, M, Baumann, U.
Deposit date:2013-03-24
Release date:2013-11-27
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural Characterization of the Ribonuclease H-Like Type Askha Superfamily Kinase Mk0840 from Methanopyrus Kandleri
Acta Crystallogr.,Sect.D, 69, 2013
4BG8
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BU of 4bg8 by Molmil
Apo form of a putative sugar kinase MK0840 from Methanopyrus kandleri (monoclinic space group)
Descriptor: ACETATE ION, CHLORIDE ION, POTASSIUM ION, ...
Authors:Schacherl, M, Waltersperger, S.M, Baumann, U.
Deposit date:2013-03-24
Release date:2013-11-27
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:Structural Characterization of the Ribonuclease H-Like Type Askha Superfamily Kinase Mk0840 from Methanopyrus Kandleri
Acta Crystallogr.,Sect.D, 69, 2013
4BGB
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BU of 4bgb by Molmil
Nucleotide-bound closed form of a putative sugar kinase MK0840 from Methanopyrus kandleri
Descriptor: ADENOSINE-5'-DIPHOSPHATE, CALCIUM ION, GLYCEROL, ...
Authors:Schacherl, M, Baumann, U.
Deposit date:2013-03-24
Release date:2013-11-27
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.34 Å)
Cite:Structural Characterization of the Ribonuclease H-Like Type Askha Superfamily Kinase Mk0840 from Methanopyrus Kandleri
Acta Crystallogr.,Sect.D, 69, 2013
4WW0
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BU of 4ww0 by Molmil
Truncated FtsH from A. aeolicus
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ATP-dependent zinc metalloprotease FtsH, ZINC ION
Authors:Vostrukhina, M, Baumann, U, Schacherl, M, Bieniossek, C, Lanz, M, Baumgartner, R.
Deposit date:2014-11-09
Release date:2015-05-06
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2.96 Å)
Cite:The structure of Aquifex aeolicus FtsH in the ADP-bound state reveals a C2-symmetric hexamer.
Acta Crystallogr.,Sect.D, 71, 2015
5N12
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BU of 5n12 by Molmil
Crystal structure of TCE treated rPPEP-1
Descriptor: 2,2,2-tris-chloroethanol, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Pro-Pro endopeptidase, ...
Authors:Pichlo, C, Schacherl, M, Baumann, U.
Deposit date:2017-02-04
Release date:2018-05-30
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.38 Å)
Cite:Improved protein-crystal identification by using 2,2,2-trichloroethanol as a fluorescence enhancer.
Acta Crystallogr F Struct Biol Commun, 74, 2018
3ZVS
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BU of 3zvs by Molmil
Crystal structure of Archaemetzincin (AmzA) from Archaeoglobus fulgidus at 1.4 A resolution complexed with malonate
Descriptor: ARCHAEMETZINCIN, MALONATE ION, ZINC ION
Authors:Graef, C, Schacherl, M, Baumann, U.
Deposit date:2011-07-27
Release date:2012-08-08
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.396 Å)
Cite:Crystal Structures of Archaemetzincin Reveal a Moldable Substrate-Binding Site.
Plos One, 7, 2012
8PEG
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BU of 8peg by Molmil
Escherichia coli paused disome complex (queueing 70S non-rotated closed PRE state)
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S1, ...
Authors:Fluegel, T, Schacherl, M.
Deposit date:2023-06-13
Release date:2024-03-06
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Transient disome complex formation in native polysomes during ongoing protein synthesis captured by cryo-EM.
Nat Commun, 15, 2024
8PKL
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BU of 8pkl by Molmil
Escherichia coli paused disome complex (leading 70S non-rotated closed PRE state)
Descriptor: 1,4-DIAMINOBUTANE, 16S ribosomal RNA, 23S ribosomal RNA, ...
Authors:Fluegel, T, Schacherl, M.
Deposit date:2023-06-26
Release date:2024-03-06
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (3.09 Å)
Cite:Transient disome complex formation in native polysomes during ongoing protein synthesis captured by cryo-EM.
Nat Commun, 15, 2024
5FR2
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BU of 5fr2 by Molmil
Farnesylated RhoA-GDP in complex with RhoGDI-alpha, lysine acetylated at K178
Descriptor: FARNESYL, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ...
Authors:Kuhlmann, N, Wroblowski, S, Knyphausen, P, de Boor, S, Brenig, J, Zienert, A.Y, Meyer-Teschendorf, K, Praefcke, G.J.K, Nolte, H, Krueger, M, Schacherl, M, Baumann, U, James, L.C, Chin, J.W, Lammers, M.
Deposit date:2015-12-15
Release date:2016-01-13
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (3.35 Å)
Cite:Structural and Mechanistic Insights Into the Regulation of the Fundamental Rho-Regulator Rhogdi Alpha by Lysine Acetylation.
J.Biol.Chem., 291, 2016
5D88
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BU of 5d88 by Molmil
The Structure of the U32 Peptidase Mk0906
Descriptor: ACETATE ION, Predicted protease of the collagenase family, ZINC ION
Authors:Baumann, U, Schacherl, M, Monatda, A.A.M.
Deposit date:2015-08-15
Release date:2015-12-02
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.66 Å)
Cite:The first crystal structure of the peptidase domain of the U32 peptidase family.
Acta Crystallogr.,Sect.D, 71, 2015
5FYQ
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BU of 5fyq by Molmil
Sirt2 in complex with a 13-mer trifluoroacetylated Ran peptide
Descriptor: NAD-DEPENDENT PROTEIN DEACETYLASE SIRTUIN-2, RAN AA 31-43, SULFATE ION, ...
Authors:Knyphausen, P, de Boor, S, Scislowski, L, Extra, A, Baldus, L, Schacherl, M, Baumann, U, Neundorf, I, Lammers, M.
Deposit date:2016-03-09
Release date:2016-05-25
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (3 Å)
Cite:Insights Into Lysine-Deacetylation of Natively Folded Substrate Proteins by Sirtuins.
J.Biol.Chem., 291, 2016
6GZ1
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BU of 6gz1 by Molmil
Crystal Structure of the LeuO Effector Binding Domain
Descriptor: HTH-type transcriptional regulator LeuO, SULFATE ION
Authors:Fragel, S, Montada, A.M, Baumann, U, Schacherl, M, Schnetz, K.
Deposit date:2018-07-02
Release date:2019-06-05
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.74 Å)
Cite:Characterization of the pleiotropic LysR-type transcription regulator LeuO of Escherichia coli.
Nucleic Acids Res., 47, 2019

 

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