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PDB: 133 results

1K4Q
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Human Glutathione Reductase Inactivated by Peroxynitrite
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, Glutathione Reductase
Authors:Savvides, S.N, Scheiwein, M, Boehme, C.C, Arteel, G.E, Karplus, P.A, Becker, K, Schirmer, R.H.
Deposit date:2001-10-08
Release date:2002-01-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of the antioxidant enzyme glutathione reductase inactivated by peroxynitrite.
J.Biol.Chem., 277, 2002
1OPX
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Crystal structure of the traffic ATPase (HP0525) of the Helicobacter pylori type IV secretion system bound by sulfate
Descriptor: NONAETHYLENE GLYCOL, SULFATE ION, virB11 homolog
Authors:Savvides, S.N, Yeo, H.J, Beck, M.R, Blaesing, F, Lurz, R, Lanka, E, Buhrdorf, R, Fischer, W, Haas, R, Waksman, G.
Deposit date:2003-03-06
Release date:2003-05-06
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:VirB11 ATPases are dynamic hexameric assemblies: New insights into bacterial type IV secretion
Embo J., 22, 2003
1NLZ
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Crystal structure of unliganded traffic ATPase of the type IV secretion system of helicobacter pylori
Descriptor: virB11 homolog
Authors:Savvides, S.N, Yeo, H.J, Beck, M.R, Blaesing, F, Lurz, R, Lanka, E, Buhrdorf, R, Fischer, W, Haas, R, Waksman, G.
Deposit date:2003-01-08
Release date:2003-05-06
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (3 Å)
Cite:VirB11 ATPases are dynamic hexameric assemblies: New insights into bacterial type IV secretion
Embo J., 22, 2003
1NLY
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Crystal structure of the traffic ATPase of the Helicobacter pylori type IV secretion system in complex with ATPgammaS
Descriptor: MAGNESIUM ION, NONAETHYLENE GLYCOL, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER, ...
Authors:Savvides, S.N, Yeo, H.J, Beck, M.R, Blaesing, F, Lurz, R, Lanka, E, Buhrdorf, R, Fischer, W, Haas, R, Waksman, G.
Deposit date:2003-01-08
Release date:2003-05-06
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:VirB11 ATPases are dynamic hexameric assemblies: New insights into bacterial type IV secretion
Embo J., 22, 2003
1SRU
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Crystal structure of full length E. coli SSB protein
Descriptor: Single-strand binding protein
Authors:Savvides, S.N, Raghunathan, S, Fuetterer, K, Kozlov, A.G, Lohman, T.M, Waksman, G.
Deposit date:2004-03-23
Release date:2004-08-03
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:The C-terminal domain of full-length E. coli SSB is disordered even when bound to DNA.
Protein Sci., 13, 2004
1XAN
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HUMAN GLUTATHIONE REDUCTASE IN COMPLEX WITH A XANTHENE INHIBITOR
Descriptor: 3,6-DIHYDROXY-XANTHENE-9-PROPIONIC ACID, FLAVIN-ADENINE DINUCLEOTIDE, GLUTATHIONE REDUCTASE
Authors:Savvides, S.N, Karplus, P.A.
Deposit date:1996-01-26
Release date:1996-07-11
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Kinetics and crystallographic analysis of human glutathione reductase in complex with a xanthene inhibitor.
J.Biol.Chem., 271, 1996
1ETE
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BU of 1ete by Molmil
CRYSTAL STRUCTURE OF THE FLT3 LIGAND
Descriptor: FLT3 LIGAND, ZINC ION
Authors:Savvides, S.N, Boone, T, Karplus, P.A.
Deposit date:2000-04-12
Release date:2000-06-14
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Flt3 ligand structure and unexpected commonalities of helical bundles and cystine knots.
Nat.Struct.Biol., 7, 2000
2GOU
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Structure of wild type, oxidized SYE1, an OYE homologue from S. oneidensis
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL, FLAVIN MONONUCLEOTIDE, ...
Authors:Savvides, S.N, van den Hemel, D.
Deposit date:2006-04-14
Release date:2006-07-25
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Ligand-induced conformational changes in the capping subdomain of a bacterial old yellow enzyme homologue and conserved sequence fingerprints provide new insights into substrate binding.
J.Biol.Chem., 281, 2006
2GQA
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Structure of NADH-reduced SYE1, an OYE homologue from S. oneidensis
Descriptor: FLAVIN MONONUCLEOTIDE, SULFATE ION, oxidoreductase, ...
Authors:Savvides, S.N, van den Hemel, D.
Deposit date:2006-04-20
Release date:2006-07-25
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Ligand-induced conformational changes in the capping subdomain of a bacterial old yellow enzyme homologue and conserved sequence fingerprints provide new insights into substrate binding.
J.Biol.Chem., 281, 2006
2GQ9
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Structure of SYE1, an OYE homologue from S. oneidensis, in complex with p-hydroxybenzaldehyde
Descriptor: FLAVIN MONONUCLEOTIDE, P-HYDROXYBENZALDEHYDE, SULFATE ION, ...
Authors:Savvides, S.N, van den Hemel, D.
Deposit date:2006-04-20
Release date:2006-07-25
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Ligand-induced conformational changes in the capping subdomain of a bacterial old yellow enzyme homologue and conserved sequence fingerprints provide new insights into substrate binding.
J.Biol.Chem., 281, 2006
2I9V
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Structural role of Y98 in PYP: effects on fluorescence, gateway and photocycle recovery
Descriptor: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein
Authors:Savvides, S.N, Kyndt, J.
Deposit date:2006-09-06
Release date:2007-02-06
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural role of tyrosine 98 in photoactive yellow protein: effects on fluorescence, gateway, and photocycle recovery.
Biochemistry, 46, 2007
2GQ8
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Structure of SYE1, an OYE homologue from S. ondeidensis, in complex with p-hydroxyacetophenone
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, FLAVIN MONONUCLEOTIDE, P-HYDROXYACETOPHENONE, ...
Authors:Savvides, S.N, van den Hemel, D.
Deposit date:2006-04-20
Release date:2006-07-25
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Ligand-induced conformational changes in the capping subdomain of a bacterial old yellow enzyme homologue and conserved sequence fingerprints provide new insights into substrate binding.
J.Biol.Chem., 281, 2006
7OX6
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BU of 7ox6 by Molmil
Solution structure of human interleukin-9
Descriptor: Interleukin-9
Authors:Savvides, S.N, Tripsianes, K, De Vos, T, Papageorgiou, A, Evangelidis, T.
Deposit date:2021-06-22
Release date:2022-12-28
Last modified:2024-11-06
Method:SOLUTION NMR
Cite:Structural basis for the mechanism and antagonism of receptor signaling mediated by Interleukin-9 (IL-9)
Biorxiv, 2022
8QMG
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Tobacco lectin Nictaba in apo state including I and Eu SAD datasets.
Descriptor: Nictaba, ZINC ION
Authors:Bloch, Y, Savvides, S.N.
Deposit date:2023-09-22
Release date:2023-11-08
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The crystal structure of Nictaba reveals its carbohydrate-binding properties and a new lectin dimerization mode.
Glycobiology, 2024
7R3N
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BU of 7r3n by Molmil
mouse Interleukin-12 subunit beta - p80 homodimer in space group P21 crystal form 3
Descriptor: Interleukin-12 subunit beta, PHOSPHATE ION, alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Bloch, Y, Savvides, S.N.
Deposit date:2022-02-07
Release date:2022-05-04
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (3.16 Å)
Cite:Around she goes: the structure of mouse Interleukin-12 p80
To Be Published
8AVB
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Cryo-EM structure for mouse leptin in complex with the mouse LEP-R ectodomain (1:2 mLEP:mLEPR model).
Descriptor: Leptin, Leptin receptor
Authors:Verstraete, K, Savvides, S.N, Verschueren, K.G, Tsirigotaki, A.
Deposit date:2022-08-26
Release date:2023-04-05
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (4.43 Å)
Cite:Mechanism of receptor assembly via the pleiotropic adipokine Leptin.
Nat.Struct.Mol.Biol., 30, 2023
7AL7
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BU of 7al7 by Molmil
The Crystal Structure of Human IL-18 in Complex With Human IL-18 Binding Protein
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Glutathione S-transferase class-mu 26 kDa isozyme,Interleukin-18, Interleukin-18-binding protein
Authors:Detry, S, Andries, J, Bloch, Y, Clancy, D, Savvides, S.N.
Deposit date:2020-10-05
Release date:2022-04-20
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.801 Å)
Cite:Structural basis of human IL-18 sequestration by the decoy receptor IL-18 binding protein in inflammation and tumor immunity.
J.Biol.Chem., 298, 2022
4WRL
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BU of 4wrl by Molmil
Structure of the human CSF-1:CSF-1R complex
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Macrophage colony-stimulating factor 1, Macrophage colony-stimulating factor 1 receptor, ...
Authors:Felix, J, De Munck, S, Elegheert, J, Savvides, S.N.
Deposit date:2014-10-24
Release date:2015-08-12
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.802 Å)
Cite:Structure and Assembly Mechanism of the Signaling Complex Mediated by Human CSF-1.
Structure, 23, 2015
4WRM
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BU of 4wrm by Molmil
Structure of the human CSF-1:CSF-1R complex
Descriptor: Macrophage colony-stimulating factor 1, Macrophage colony-stimulating factor 1 receptor
Authors:Felix, J, De Munck, S, Elegheert, J, Savvides, S.N.
Deposit date:2014-10-24
Release date:2015-08-12
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (6.853 Å)
Cite:Structure and Assembly Mechanism of the Signaling Complex Mediated by Human CSF-1.
Structure, 23, 2015
5D28
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Complex of GM-CSF/IL-2 inhibition factor with Granulocyte-macrophage colony-stimulating factor
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, GM-CSF/IL-2 inhibition factor, ...
Authors:Felix, J, Savvides, S.N.
Deposit date:2015-08-05
Release date:2016-11-16
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.845 Å)
Cite:Structural basis of GM-CSF and IL-2 sequestration by the viral decoy receptor GIF.
Nat Commun, 7, 2016
5D22
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Structure of ovine granulocyte-macrophage colony-stimulating factor
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, Granulocyte-macrophage colony-stimulating factor
Authors:Felix, J, Savvides, S.N.
Deposit date:2015-08-05
Release date:2016-11-16
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.994 Å)
Cite:Structural basis of GM-CSF and IL-2 sequestration by the viral decoy receptor GIF.
Nat Commun, 7, 2016
2NNC
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BU of 2nnc by Molmil
Structure of the sulfur carrier protein SoxY from Chlorobium limicola f thiosulfatophilum
Descriptor: CHLORIDE ION, NITROGEN MOLECULE, PHOSPHATE ION, ...
Authors:Stout, J, Van Driessche, G, Savvides, S.N, Van Beeumen, J.
Deposit date:2006-10-24
Release date:2007-03-13
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.14 Å)
Cite:X-ray crystallographic analysis of the sulfur carrier protein SoxY from Chlorobium limicola f. thiosulfatophilum reveals a tetrameric structure.
Protein Sci., 16, 2007
2NNF
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Structure of the sulfur carrier protein SoxY from Chlorobium limicola f thiosulfatophilum
Descriptor: PHOSPHATE ION, Sulfur covalently-binding protein
Authors:Stout, J, Van Driessche, G, Savvides, S.N, Van Beeumen, J.
Deposit date:2006-10-24
Release date:2007-03-13
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.39 Å)
Cite:X-ray crystallographic analysis of the sulfur carrier protein SoxY from Chlorobium limicola f. thiosulfatophilum reveals a tetrameric structure.
Protein Sci., 16, 2007
4NN6
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Cytokine receptor complex - Crystal form 1B
Descriptor: Cytokine receptor-like factor 2, Interleukin-7 receptor subunit alpha, Thymic stromal lymphopoietin
Authors:Verstraete, K, van Schie, L, Savvides, S.N.
Deposit date:2013-11-16
Release date:2014-03-19
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2.545 Å)
Cite:Structural basis of the proinflammatory signaling complex mediated by TSLP.
Nat.Struct.Mol.Biol., 21, 2014
4NN5
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Cytokine receptor complex - Crystal form 1A
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, ACETATE ION, Cytokine receptor-like factor 2, ...
Authors:Verstraete, K, van Schie, L, Savvides, S.N.
Deposit date:2013-11-16
Release date:2014-03-19
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.898 Å)
Cite:Structural basis of the proinflammatory signaling complex mediated by TSLP.
Nat.Struct.Mol.Biol., 21, 2014

227561

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