Loading
PDBj
English日本語简体中文繁體中文한국어
✖
ﾒﾆｭｰPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 234 件
8GTF
DownloadVisualize
BU of 8gtf by Molmil
Cryo-EM model of the marine siphophage vB_DshS-R4C stopper-terminator complex
分子名称: Head-to-tail joining protein, Major tail protein, Terminator protein
著者Huang, Y, Sun, H, Wei, S, Zheng, Q, Li, S, Zhang, R, Xia, N.
登録日2022-09-08
公開日2023-07-12
最終更新日2024-06-19
実験手法ELECTRON MICROSCOPY (6.6 Å)
主引用文献Structure and proposed DNA delivery mechanism of a marine roseophage.
Nat Commun, 14, 2023
4FZZ
DownloadVisualize
BU of 4fzz by Molmil
Exonuclease X in complex with 5' overhanging duplex DNA
分子名称: DNA (5'-D(*GP*TP*CP*AP*TP*TP*GP*TP*GP*GP*AP*TP*CP*CP*GP*AP*G)-3'), Exodeoxyribonuclease 10, SODIUM ION
著者Wang, T, Sun, H, Cheng, F, Bi, L, Jiang, T.
登録日2012-07-08
公開日2013-07-03
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Recognition and processing of double-stranded DNA by ExoX, a distributive 3'-5' exonuclease
Nucleic Acids Res., 41, 2013
6BNS
DownloadVisualize
BU of 6bns by Molmil
STRUCTURE OF HUMAN PREGNANE X RECEPTOR LIGAND BINDING DOMAIN BOUND TETHERED WITH SRC co-activator peptide and Compound 25a AKA BICYCLIC HEXAFLUOROISOPROPYL 2 ALCOHOL SULFONAMIDES
分子名称: 2-[(2S)-4-[(4-fluorophenyl)sulfonyl]-7-(1,1,1,3,3,3-hexafluoro-2-hydroxypropan-2-yl)-3,4-dihydro-2H-1,4-benzothiazin-2-yl]-N-(2-hydroxy-2-methylpropyl)acetamide, Nuclear receptor subfamily 1 group I member 2,Nuclear receptor coactivator 1 Chimera
著者DHAR, T.G, GONG, H, WEINSTEIN, D.S, LU, Z, DUAN, J.J.W, STACHURA, S, HAQUE, L, KARMAKAR, A, HEMAGIRI, H, RAUT, D.K, GUPTA, A.K, KHAN, J.A, SACK, J.S, CAMAC, D.M, PUDZIANOWSKI, A.A, WU, D.R, YARDE, M, SHEN, D.R, BOROWSKI, V, XIE, J.H, SUN, H, ARIENZO, C.D, DABROS, M, GALELLA, M.A, WANG, F, WEIGELT, C.A, ZHAO, Q, FOSTER, W, SOMERVILLE, J.E, SALTER-CID, L.M, BARRISH, J.C, CARTER, P.H.
登録日2017-11-17
公開日2017-12-20
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.56 Å)
主引用文献Identification of bicyclic hexafluoroisopropyl alcohol sulfonamides as retinoic acid receptor-related orphan receptor gamma (ROR gamma /RORc) inverse agonists. Employing structure-based drug design to improve pregnane X receptor (PXR) selectivity.
Bioorg. Med. Chem. Lett., 28, 2018
5H52
DownloadVisualize
BU of 5h52 by Molmil
Structure of Titanium-bound human serum transferrin
分子名称: CITRIC ACID, MALONATE ION, Serotransferrin, ...
著者Curtin, J.P, Wang, M, Sun, H.
登録日2016-11-04
公開日2017-11-08
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献The role of citrate, lactate and transferrin in determining titanium release from surgical devices into human serum.
J. Biol. Inorg. Chem., 23, 2018
7W0G
DownloadVisualize
BU of 7w0g by Molmil
Human PPAR delta ligand binding domain in complex with a synthetic agonist H11
分子名称: 2-[2,6-dimethyl-4-[[5-oxidanylidene-4-[4-(trifluoromethyloxy)phenyl]-1,2,4-triazol-1-yl]methyl]phenoxy]-2-methyl-propanoic acid, Peroxisome proliferator-activated receptor delta
著者Dai, L, Sun, H.B, Yuan, H.L, Feng, Z.Q.
登録日2021-11-18
公開日2022-02-02
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (2.443 Å)
主引用文献Design, Synthesis, and Biological Evaluation of Triazolone Derivatives as Potent PPAR alpha / delta Dual Agonists for the Treatment of Nonalcoholic Steatohepatitis.
J.Med.Chem., 65, 2022
6LI4
DownloadVisualize
BU of 6li4 by Molmil
Crystal structure of MCR-1-S
分子名称: Probable phosphatidylethanolamine transferase Mcr-1, ZINC ION
著者Zhang, Q, Wang, M, Sun, H.
登録日2019-12-10
公開日2020-09-16
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (1.78 Å)
主引用文献Resensitizing carbapenem- and colistin-resistant bacteria to antibiotics using auranofin.
Nat Commun, 11, 2020
6LI5
DownloadVisualize
BU of 6li5 by Molmil
Crystal structure of apo-MCR-1-S
分子名称: Probable phosphatidylethanolamine transferase Mcr-1
著者Zhang, Q, Wang, M, Sun, H.
登録日2019-12-10
公開日2020-09-16
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (1.82 Å)
主引用文献Resensitizing carbapenem- and colistin-resistant bacteria to antibiotics using auranofin.
Nat Commun, 11, 2020
8HTU
DownloadVisualize
BU of 8htu by Molmil
Cryo-EM structure of PpPSI-L
分子名称: (1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R,6R)-4-HYDROXY-2,2,6-TRIMETHYL-7-OXABICYCLO[4.1.0]HEPT-1-YL]-3,7,12,16-TETRAMETHYLOCTADECA-1,3,5,7,9,11,13,15,17-NONAENYLIDENE}-1,5,5-TRIMETHYLCYCLOHEXANE-1,3-DIOL, (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL, (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL, ...
著者Li, M, Pan, X.W, Sun, H.Y.
登録日2022-12-21
公開日2023-08-02
最終更新日2024-10-09
実験手法ELECTRON MICROSCOPY (2.87 Å)
主引用文献Structural insights into the assembly and energy transfer of the Lhcb9-dependent photosystem I from moss Physcomitrium patens.
Nat.Plants, 9, 2023
4JAH
DownloadVisualize
BU of 4jah by Molmil
Crystal structure of 2-Selenouridine containing RNA
分子名称: POTASSIUM ION, RNA (5'-R(*GP*UP*GP*UP*AP*(RUS)P*AP*C)-3')
著者Jiang, S, Gan, J, Sun, H, Huang, Z.
登録日2013-02-18
公開日2014-01-29
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Crystal structure of 2-Selenouridine containing RNA
To be Published
4H0W
DownloadVisualize
BU of 4h0w by Molmil
Bismuth bound human serum transferrin
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Bismuth(III) ION, CARBONATE ION, ...
著者Yang, N, Zhang, H, Wang, M, Hao, Q, Sun, H.
登録日2012-09-10
公開日2012-12-26
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Iron and bismuth bound human serum transferrin reveals a partially-opened conformation in the N-lobe.
Sci Rep, 2, 2012
6IO4
DownloadVisualize
BU of 6io4 by Molmil
Silver-bound Glyceraldehyde-3-phosphate dehydrogenase A
分子名称: Glyceraldehyde-3-phosphate dehydrogenase A, SILVER ION
著者Wang, H, Sun, H, Wang, M.
登録日2018-10-29
公開日2019-07-03
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献Antimicrobial silver targets glyceraldehyde-3-phosphate dehydrogenase in glycolysis ofE. coli.
Chem Sci, 10, 2019
6LRS
DownloadVisualize
BU of 6lrs by Molmil
Cryo-EM structure of RbcL8-RbcS4 from Anabaena sp. PCC 7120
分子名称: Ribulose bisphosphate carboxylase large chain, Ribulose bisphosphate carboxylase small chain
著者Xia, L.Y, Jiang, Y.L, Kong, W.W, Sun, H, Li, W.F, Chen, Y, Zhou, C.Z.
登録日2020-01-16
公開日2020-07-15
最終更新日2024-10-23
実験手法ELECTRON MICROSCOPY (3.37 Å)
主引用文献Molecular basis for the assembly of RuBisCO assisted by the chaperone Raf1.
Nat.Plants, 6, 2020
6IO6
DownloadVisualize
BU of 6io6 by Molmil
Silver-bound Glyceraldehyde-3-phosphate dehydrogenase A at non-catalytic site
分子名称: Glyceraldehyde-3-phosphate dehydrogenase A, SILVER ION
著者Wang, H, Sun, H, Wang, M.
登録日2018-10-29
公開日2019-07-03
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.64 Å)
主引用文献Antimicrobial silver targets glyceraldehyde-3-phosphate dehydrogenase in glycolysis ofE. coli.
Chem Sci, 10, 2019
4JAB
DownloadVisualize
BU of 4jab by Molmil
U/G Wobble Base Pair in a RNA Duplex
分子名称: RNA (5'-R(*GP*UP*GP*UP*AP*UP*AP*C)-3'), STRONTIUM ION
著者Jiang, S, Sun, H, Gan, J, Huang, Z.
登録日2013-02-18
公開日2014-01-29
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.23 Å)
主引用文献2-Se Uridine enhanced U/G Wobble Base Pair Discrimination
To be Published
5XP6
DownloadVisualize
BU of 5xp6 by Molmil
native structure of NDM-1 crystallized at pH5.5
分子名称: 1,2-ETHANEDIOL, HYDROXIDE ION, Metallo-beta-lactamase type 2, ...
著者Zhang, H, Ma, G, Lai, J, Sun, H.
登録日2017-06-01
公開日2018-03-07
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (0.95 Å)
主引用文献Bismuth antimicrobial drugs serve as broad-spectrum metallo-beta-lactamase inhibitors
Nat Commun, 9, 2018
6KA0
DownloadVisualize
BU of 6ka0 by Molmil
Silver-bound E.coli Malate dehydrogenase
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Malate dehydrogenase, SILVER ION
著者Wang, H, Wang, M, Sun, H.
登録日2019-06-19
公開日2020-06-17
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.22 Å)
主引用文献MDH is a major silver target in E. coli
To Be Published
6KA1
DownloadVisualize
BU of 6ka1 by Molmil
E.coli Malate dehydrogenase
分子名称: Malate dehydrogenase
著者Wang, H, Wang, M, Sun, H.
登録日2019-06-19
公開日2020-06-17
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.543 Å)
主引用文献MDH is a major silver target in E. coli
To Be Published
4N6F
DownloadVisualize
BU of 4n6f by Molmil
Crystal structure of Amycolatopsis orientalis BexX complexed with G6P
分子名称: CALCIUM ION, FRUCTOSE -6-PHOSPHATE, Putative thiosugar synthase
著者Zhang, X, Zhang, Y, Kinsland, C, Sasaki, E, Sun, H.G, Lu, M.J, Liu, T, Ou, A, Li, J, Chen, Y, Liu, H, Ealick, S.E.
登録日2013-10-11
公開日2014-05-14
最終更新日2024-10-09
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献Co-opting sulphur-carrier proteins from primary metabolic pathways for 2-thiosugar biosynthesis.
Nature, 509, 2014
4KW0
DownloadVisualize
BU of 4kw0 by Molmil
Structure of Dickerson-Drew Dodecamer with 2'-MeSe-ara-G modification
分子名称: DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*(1TW)P*CP*G)-3'), MAGNESIUM ION
著者Jiang, S, Gan, J, Sheng, J, Sun, H, Huang, Z.
登録日2013-05-23
公開日2013-07-17
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (1.49 Å)
主引用文献Structure of Dickerson-Drew Dodecamer with 2'-MeSe-ara-G modification
TO BE PUBLISHED
5Z3W
DownloadVisualize
BU of 5z3w by Molmil
Malate dehydrogenase binds silver at C113
分子名称: Malate dehydrogenase, SILVER ION
著者Wang, H, Wang, M, Sun, H.
登録日2018-01-09
公開日2019-01-16
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.29 Å)
主引用文献Atomic differentiation of silver binding preference in protein targets: Escherichia coli malate dehydrogenase as a paradigm
Chem Sci, 2020
6IOJ
DownloadVisualize
BU of 6ioj by Molmil
Glyceraldehyde-3-phosphate dehydrogenase A (apo-form)
分子名称: Glyceraldehyde-3-phosphate dehydrogenase A
著者Wang, H, Sun, H, Wang, M.
登録日2018-10-30
公開日2019-07-03
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.29 Å)
主引用文献Antimicrobial silver targets glyceraldehyde-3-phosphate dehydrogenase in glycolysis ofE. coli.
Chem Sci, 10, 2019
5XP9
DownloadVisualize
BU of 5xp9 by Molmil
Crystal structure of Bismuth bound NDM-1
分子名称: Bismuth(III) ION, GLYCEROL, Metallo-beta-lactamase type 2
著者Zhang, H, Ma, G, Lai, T.P, Sun, H.
登録日2017-06-01
公開日2018-03-07
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Bismuth antimicrobial drugs serve as broad-spectrum metallo-beta-lactamase inhibitors
Nat Commun, 9, 2018
5X5S
DownloadVisualize
BU of 5x5s by Molmil
Ligand induced structure of AmyP-SBD
分子名称: Amylase
著者Li, X, Yu, J, Sun, H, Zhang, X.
登録日2017-02-17
公開日2017-04-05
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献Ligand binding induced folding of a novel CBM69 starch binding domain
To Be Published
6JAS
DownloadVisualize
BU of 6jas by Molmil
Human serum transferrin with iron citrate bound
分子名称: CITRIC ACID, FE (III) ION, MALONATE ION, ...
著者Wang, M, Wang, H, Sun, H.
登録日2019-01-25
公開日2020-01-29
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.501 Å)
主引用文献Binding of ruthenium and osmium at non-iron sites of transferrin explains their iron-independent cellular uptake
To Be Published
3S49
DownloadVisualize
BU of 3s49 by Molmil
RNA crystal structure with 2-Se-uridine modification
分子名称: POTASSIUM ION, RNA (5'-R(*GP*UP*AP*UP*AP*(RUS)P*AP*C)-3')
著者Sheng, J, Gan, J, Sun, H, Hassan, A.E.H, Jiang, S, Huang, Z.
登録日2011-05-19
公開日2011-06-29
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Higher Specificity of RNA Base Pairing with 2-Selenouridine
To be Published

227111

件を2024-11-06に公開中

PDB statisticsPDBj update infoContact PDBjnumon