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PDB: 51 件
4UHU
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BU of 4uhu by Molmil
W229D mutant of the last common ancestor of Gram-negative bacteria (GNCA) beta-lactamase class A
分子名称: ACETATE ION, FORMIC ACID, GNCA LACTAMASE W229D
著者Gavira, J.A, Risso, V.A, Martinez-Rodriguez, S, Sanchez-Ruiz, J.M.
登録日2015-03-25
公開日2016-04-13
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.305 Å)
主引用文献De novo active sites for resurrected Precambrian enzymes.
Nat Commun, 8, 2017
8BMV
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BU of 8bmv by Molmil
Ligand binding domain of the P. Putida receptor McpH in complex with Uric acid
分子名称: Methyl-accepting chemotaxis protein McpH, URIC ACID
著者Gavira, J.A, Krell, T, Fernandez, M, Martinez-Rodriguez, S.
登録日2022-11-11
公開日2024-07-24
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Ubiquitous purine sensor modulates diverse signal transduction pathways in bacteria.
Nat Commun, 15, 2024
6YC5
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BU of 6yc5 by Molmil
RT structure of Thaumatin obtained at 1.35 A resolution from crystal grown in a Kapton microchip.
分子名称: L(+)-TARTARIC ACID, SODIUM ION, Thaumatin-1
著者Gavira, J.A, Martinez-Rodriguez, S.
登録日2020-03-18
公開日2020-08-12
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.35 Å)
主引用文献Attaining atomic resolution from in situ data collection at room temperature using counter-diffusion-based low-cost microchips.
Acta Crystallogr D Struct Biol, 76, 2020
6YBI
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BU of 6ybi by Molmil
RT structure of HEW Lysozyme obtained at 1.12 A resolution from crystal grown in a Mylar microchip.
分子名称: CHLORIDE ION, Lysozyme, SODIUM ION
著者Gavira, J.A, Martinez-Rodriguez, S.
登録日2020-03-17
公開日2020-08-12
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.12 Å)
主引用文献Attaining atomic resolution from in situ data collection at room temperature using counter-diffusion-based low-cost microchips.
Acta Crystallogr D Struct Biol, 76, 2020
6YBO
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BU of 6ybo by Molmil
RT structure of Glucose Isomerase obtained at 1.06 A resolution from crystal grown in a Kapton microchip.
分子名称: MAGNESIUM ION, SODIUM ION, Xylose isomerase
著者Gavira, J.A, Martinez-Rodriguez, S.
登録日2020-03-17
公開日2020-08-12
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.06 Å)
主引用文献Attaining atomic resolution from in situ data collection at room temperature using counter-diffusion-based low-cost microchips.
Acta Crystallogr D Struct Biol, 76, 2020
6YBX
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BU of 6ybx by Molmil
RT structure of Thaumatin obtained at 1.14 A resolution from crystal grown in a Mylar microchip.
分子名称: L(+)-TARTARIC ACID, SODIUM ION, Thaumatin-1
著者Gavira, J.A, Martinez-Rodriguez, S.
登録日2020-03-18
公開日2020-08-12
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.14 Å)
主引用文献Attaining atomic resolution from in situ data collection at room temperature using counter-diffusion-based low-cost microchips.
Acta Crystallogr D Struct Biol, 76, 2020
3N5F
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BU of 3n5f by Molmil
Crystal Structure of L-N-carbamoylase from Geobacillus stearothermophilus CECT43
分子名称: CACODYLATE ION, COBALT (II) ION, ISOPROPYL ALCOHOL, ...
著者Garcia-Pino, A, Martinez-Rodriguez, S, Gavira, J.A.
登録日2010-05-25
公開日2011-05-25
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.75 Å)
主引用文献Mutational and structural analysis of L-N-carbamoylase reveals new insights into a peptidase m20/m25/m40 family member.
J.Bacteriol., 194, 2012
3DC8
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BU of 3dc8 by Molmil
Crystal structure of dihydropyrimidinase from Sinorhizobium meliloti
分子名称: ACETATE ION, Dihydropyrimidinase, GLYCEROL, ...
著者Gavira, J.A, Martinez-Rodriguez, S.
登録日2008-06-03
公開日2009-04-21
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Structure of dihydropyrimidinase from Sinorhizobium meliloti CECT4114: new features in an amidohydrolase family member
J.Struct.Biol., 169, 2010
8QME
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BU of 8qme by Molmil
Structural characterization of beta-xyloxidase XynB2 from Geobacillus stearothermophilus CECT43
分子名称: ACETATE ION, Beta-xylosidase, GLYCEROL, ...
著者Gavira, J.A, Martinez-Rodriguez, S.
登録日2023-09-22
公開日2024-03-27
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献Structural Characterization of beta-Xylosidase XynB2 from Geobacillus stearothermophilus CECT43: A Member of the Glycoside Hydrolase Family GH52
Crystals, 14, 2024
6YBR
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BU of 6ybr by Molmil
RT structure of Glucose Isomerase obtained at 1.20 A resolution from crystal grown in a Mylar microchip.
分子名称: MAGNESIUM ION, SODIUM ION, Xylose isomerase
著者Gavira, J.A, Martinez-Rodriguez, S.
登録日2020-03-17
公開日2020-08-12
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.2 Å)
主引用文献Attaining atomic resolution from in situ data collection at room temperature using counter-diffusion-based low-cost microchips.
Acta Crystallogr D Struct Biol, 76, 2020
6YBF
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BU of 6ybf by Molmil
RT structure of HEW Lysozyme obtained at 1.13 A resolution from crystal grown in a Kapton microchip.
分子名称: CHLORIDE ION, Lysozyme, SODIUM ION
著者Gavira, J, Martinez-Rodriguez, S.
登録日2020-03-17
公開日2020-08-12
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.13 Å)
主引用文献Attaining atomic resolution from in situ data collection at room temperature using counter-diffusion-based low-cost microchips.
Acta Crystallogr D Struct Biol, 76, 2020
2Z70
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BU of 2z70 by Molmil
E.coli RNase 1 in complex with d(CGCGATCGCG)
分子名称: CALCIUM ION, DNA (5'-D(*DCP*DGP*DCP*DGP*DAP*DTP*DCP*DGP*DCP*DG)-3'), Ribonuclease I
著者Martinez-Rodriguez, S, Loris, R, Messens, J.
登録日2007-08-09
公開日2008-06-24
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Nonspecific base recognition mediated by water bridges and hydrophobic stacking in ribonuclease I from Escherichia coli
Protein Sci., 17, 2008
3EAK
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BU of 3eak by Molmil
NbBCII10 humanized (FGLA mutant)
分子名称: NbBCII10-FGLA, SULFATE ION
著者Vincke, C, Loris, R, Saerens, D, Martinez-Rodriguez, S, Muyldermans, S, Conrath, K.
登録日2008-08-26
公開日2008-12-02
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献General strategy to humanize a camelid single-domain antibody and identification of a universal humanized nanobody scaffold.
J.Biol.Chem., 2008
3EBA
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BU of 3eba by Molmil
CAbHul6 FGLW mutant (humanized) in complex with human lysozyme
分子名称: CAbHul6, Lysozyme C, SULFATE ION
著者Loris, R, Vincke, C, Saerens, D, Martinez-Rodriguez, S, Muyldermans, S, Conrath, K.
登録日2008-08-27
公開日2008-12-02
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献General Strategy to Humanize a Camelid Single-domain Antibody and Identification of a Universal Humanized Nanobody Scaffold
J.Biol.Chem., 284, 2009
4HX3
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BU of 4hx3 by Molmil
Crystal structure of Streptomyces caespitosus sermetstatin in complex with S. caespitosus snapalysin
分子名称: Extracellular small neutral protease, GLYCEROL, Neutral proteinase inhibitor ScNPI, ...
著者Trillo-Muyo, S, Martinez-Rodriguez, S, Arolas, J.L, Gomis-Ruth, F.X.
登録日2012-11-09
公開日2012-12-05
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Mechanism of action of a Janus-faced single-domain protein inhibitor simultaneously targeting two peptidase classes
CHEM SCI, 4, 2013
4HX2
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BU of 4hx2 by Molmil
Crystal structure of Streptomyces caespitosus sermetstatin in complex with Bacillus licheniformis subtilisin
分子名称: (2R,2'R)-3,3'-oxydipropane-1,2-diol, ACETATE ION, CACODYLATE ION, ...
著者Trillo-Muyo, S, Martinez-Rodriguez, S, Arolas, J.L, Gomis-Ruth, F.X.
登録日2012-11-09
公開日2012-12-05
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献Mechanism of action of a Janus-faced single-domain protein inhibitor simultaneously targeting two peptidase classes
CHEM SCI, 4, 2013
6G5Z
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BU of 6g5z by Molmil
Choline sulfatase from Ensifer (Sinorhizobium) meliloti
分子名称: Choline-sulfatase, MAGNESIUM ION, SULFATE ION
著者Martinez-Rodriguez, S, Camara-Artigas, A.
登録日2018-03-30
公開日2019-04-10
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.98 Å)
主引用文献Structural insights into choline-O-sulfatase reveal the molecular determinants for ligand binding.
Acta Crystallogr D Struct Biol, 78, 2022
6G60
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BU of 6g60 by Molmil
Choline sulfatase from Ensifer (Sinorhizobium) meliloti cocrystalized with choline
分子名称: CHOLINE ION, Choline-sulfatase, MAGNESIUM ION, ...
著者Martinez-Rodriguez, S, Camara-Artigas, A.
登録日2018-03-30
公開日2019-04-10
最終更新日2023-03-08
実験手法X-RAY DIFFRACTION (1.84 Å)
主引用文献Structural insights into choline-O-sulfatase reveal the molecular determinants for ligand binding.
Acta Crystallogr D Struct Biol, 78, 2022
3DIE
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BU of 3die by Molmil
Domain swapping of Staphylococcus Aureus thioredoxin W28A mutant
分子名称: CADMIUM ION, FE (III) ION, Thioredoxin
著者Martinez-Rodriguez, S, Loris, R, Messens, J.
登録日2008-06-20
公開日2009-03-24
最終更新日2021-11-10
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Coupling of domain swapping to kinetic stability in a thioredoxin mutant
J.Mol.Biol., 385, 2009
4HWX
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BU of 4hwx by Molmil
Crystal structure of Streptomyces caespitosus sermetstatin
分子名称: ACETATE ION, GLYCEROL, Neutral proteinase inhibitor ScNPI
著者Trillo-Muyo, S, Martinez-Rodriguez, S, Arolas, J.L, Gomis-Ruth, F.X.
登録日2012-11-09
公開日2012-12-05
最終更新日2017-11-15
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Mechanism of action of a Janus-faced single-domain protein inhibitor simultaneously targeting two peptidase classes
CHEM SCI, 4, 2013
5G3O
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BU of 5g3o by Molmil
Bacillus cereus formamidase (BceAmiF) inhibited with urea.
分子名称: 1-ETHOXY-2-(2-ETHOXYETHOXY)ETHANE, DI(HYDROXYETHYL)ETHER, FORMAMIDASE, ...
著者Gavira, J.A, Martinez-Rodriguez, S, Conejero-Muriel, M.
登録日2016-04-29
公開日2017-04-12
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献A novel cysteine carbamoyl-switch is responsible for the inhibition of formamidase, a nitrilase superfamily member.
Arch.Biochem.Biophys., 662, 2019
6YRS
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BU of 6yrs by Molmil
Structure of a new variant of GNCA ancestral beta-lactamase
分子名称: 1,2-ETHANEDIOL, ACETATE ION, DI(HYDROXYETHYL)ETHER, ...
著者Gavira, J.A, Risso, V, Martinez-Rodriguez, S, Sanchez-Ruiz, J.M, Modi, T, Ozkan, S.B.
登録日2020-04-20
公開日2021-03-03
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Hinge-shift mechanism as a protein design principle for the evolution of beta-lactamases from substrate promiscuity to specificity.
Nat Commun, 12, 2021
5FQK
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BU of 5fqk by Molmil
W229D and F290W mutant of the last common ancestor of Gram-negative bacteria (GNCA4) beta-lactamase class A bound to 5(6)-nitrobenzotriazole (TS-analog)
分子名称: 6-NITROBENZOTRIAZOLE, GNCA4 LACTAMASE W229D AND F290W
著者Gavira, J.A, Risso, V.A, Martinez-Rodriguez, S, Sanchez-Ruiz, J.M.
登録日2015-12-11
公開日2016-12-21
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.767 Å)
主引用文献De novo active sites for resurrected Precambrian enzymes.
Nat Commun, 8, 2017
5FQI
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BU of 5fqi by Molmil
W229D and F290W mutant of the last common ancestor of Gram-negative bacteria (GNCA4) beta-lactamase class A
分子名称: 1,2-ETHANEDIOL, 2-(2-METHOXYETHOXY)ETHANOL, DI(HYDROXYETHYL)ETHER, ...
著者Gavira, J.A, Risso, V.A, Martinez-Rodriguez, S, Sanchez-Ruiz, J.M.
登録日2015-12-11
公開日2016-12-21
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献De novo active sites for resurrected Precambrian enzymes.
Nat Commun, 8, 2017
5FQJ
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BU of 5fqj by Molmil
W229D mutant of the last common ancestor of Gram-negative bacteria (GNCA) beta-lactamase bound to 5(6)-nitrobenzotriazole (TS-analog)
分子名称: 6-NITROBENZOTRIAZOLE, GNCA LACTAMASE W229D
著者Gavira, J.A, Martinez-Rodriguez, S, Risso, V.A, Sanchez-Ruiz, J.M.
登録日2015-12-11
公開日2016-12-21
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.271 Å)
主引用文献De novo active sites for resurrected Precambrian enzymes.
Nat Commun, 8, 2017

 

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