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PDB: 261 件

1N3G
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Solution structure of the ribosome-associated cold shock response protein Yfia of Escherichia coli
分子名称: Protein yfiA
著者Rak, A, Kalinin, A, Shcherbakov, D, Bayer, P.
登録日2002-10-28
公開日2003-01-28
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Solution structure of the ribosome-associated cold shock response protein Yfia of Escherichia col
Biochem.Biophys.Res.Commun., 299, 2002
1FKM
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CRYSTAL STRUCTURE OF THE YPT/RAB-GAP DOMAIN OF GYP1P
分子名称: PROTEIN (GYP1P)
著者Rak, A, Fedorov, R, Alexandrov, K, Albert, S, Goody, R.S, Gallwitz, D, Scheidig, A.J.
登録日2000-08-09
公開日2001-02-09
最終更新日2022-12-21
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal structure of the GAP domain of Gyp1p: first insights into interaction with Ypt/Rab proteins.
EMBO J., 19, 2000
1VG0
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The crystal structures of the REP-1 protein in complex with monoprenylated Rab7 protein
分子名称: CHLORIDE ION, GERAN-8-YL GERAN, GUANOSINE-5'-DIPHOSPHATE, ...
著者Rak, A, Pylypenko, O, Niculae, A, Pyatkov, K, Goody, R.S, Alexandrov, K.
登録日2004-04-22
公開日2004-07-20
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structure of the Rab7:REP-1 complex: insights into the mechanism of Rab prenylation and choroideremia disease
Cell(Cambridge,Mass.), 117, 2004
1UKV
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Structure of RabGDP-dissociation inhibitor in complex with prenylated YPT1 GTPase
分子名称: GERAN-8-YL GERAN, GTP-binding protein YPT1, GUANOSINE-5'-DIPHOSPHATE, ...
著者Rak, A, Pylypenko, O, Durek, T, Watzke, A, Kushnir, S, Brunsveld, L, Waldmann, H, Goody, R.S, Alexandrov, K.
登録日2003-09-01
公開日2004-09-01
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Structure of Rab GDP-dissociation inhibitor in complex with prenylated YPT1 GTPase
Science, 302, 2003
1VG8
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GPPNHP-Bound Rab7
分子名称: MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER, Ras-related protein Rab-7
著者Rak, A, Pylypenko, O, Niculae, A, Pyatkov, K, Goody, R.S, Alexandrov, K.
登録日2004-04-23
公開日2004-07-20
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Structure of the Rab7:REP-1 complex: insights into the mechanism of Rab prenylation and choroideremia disease
Cell(Cambridge,Mass.), 117, 2004
1VG1
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GDP-Bound Rab7
分子名称: GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Ras-related protein Rab-7
著者Rak, A, Pylypenko, O, Niculae, A, Pyatkov, K, Goody, R.S, Alexandrov, K.
登録日2004-04-22
公開日2004-07-20
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structure of the Rab7:REP-1 complex: insights into the mechanism of Rab prenylation and choroideremia disease
Cell(Cambridge,Mass.), 117, 2004
1VG9
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The crystal structures of the REP-1 protein in complex with C-terminally truncated Rab7 protein
分子名称: 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ...
著者Rak, A, Pylypenko, O, Niculae, A, Pyatkov, K, Goody, R.S, Alexandrov, K.
登録日2004-04-23
公開日2004-07-20
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structure of the Rab7:REP-1 complex: insights into the mechanism of Rab prenylation and choroideremia disease
Cell(Cambridge,Mass.), 117, 2004
6XWT
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drosophila melanogaster CENP-A/H4 bound to N-terminal CAL1 fragment
分子名称: Chromosome alignment defect 1, Histone H3-like centromeric protein cid, Histone H4
著者Jeyaprakash, A.A, Medina-Pritchard, B, Lazou, V, Zou, J, Byron, O, Abad, M.A, Rappsilber, J, Heun, P.
登録日2020-01-24
公開日2020-04-01
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (3.47 Å)
主引用文献Structural basis for centromere maintenance by Drosophila CENP-A chaperone CAL1.
Embo J., 39, 2020
6XWV
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Crystal structure of drosophila melanogaster CENP-C bound to CAL1
分子名称: Calmodulin, Ryanodine Receptor 2
著者Jeyaprakash, A.A, Medina-Pritchard, B, Lazou, V, Zou, J, Byron, O, Abad, M.A, Rappsilber, J, Heun, P.
登録日2020-01-24
公開日2020-04-01
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (2.27 Å)
主引用文献Structural basis for centromere maintenance by Drosophila CENP-A chaperone CAL1.
Embo J., 39, 2020
7ONF
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The binding of p-coumaroyl glucose to glycogen phosphorylase reveals the relationship between structural data and effects on cell metabolome
分子名称: Glycogen phosphorylase, muscle form, INOSINIC ACID, ...
著者Tsagkarakou, A.S, Koulas, S.M, Kyriakis, E, Drakou, C.E, Leonidas, D.D.
登録日2021-05-25
公開日2022-04-06
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Structure activity relationship of the binding of p-coumaroyl glucose to glycogen phosphorylase and its effect on hepatic cell metabolic pathways
Eur J Med Chem Rep, 3, 2021
6XWU
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Crystal structure of drosophila melanogaster CENP-C cumin domain
分子名称: RE68959p
著者Jeyaprakash, A.A, Medina-Pritchard, B, Lazou, V, Zou, J, Byron, O, Abad, M.A, Rappsilber, J, Heun, P.
登録日2020-01-24
公開日2020-04-01
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.82 Å)
主引用文献Structural basis for centromere maintenance by Drosophila CENP-A chaperone CAL1.
Embo J., 39, 2020
6XWS
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Crystal Structure of Drosophila CAL1 1-160 bound to CENP-A/H4
分子名称: Chromosome alignment defect 1,Chromosome alignment defect 1, Histone H3-like centromeric protein cid, Histone H4
著者Jeyaprakash, A.A, Medina-Pritchard, B, Lazou, V, Zou, J, Byron, O, Abad, M.A, Rappsilber, J, Heun, P.
登録日2020-01-24
公開日2020-04-15
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (4.36 Å)
主引用文献Structural basis for centromere maintenance by Drosophila CENP-A chaperone CAL1.
Embo J., 39, 2020
8ARF
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Crystal structure of the N-terminal parallel dimeric coiled-coil region of the human kinetochore associated protein Spindly
分子名称: Protein Spindly
著者Perrakis, A, Ahmad, M.U.
登録日2022-08-16
公開日2022-09-07
最終更新日2022-09-28
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Conformational transitions of the Spindly adaptor underlie its interaction with Dynein and Dynactin.
J.Cell Biol., 221, 2022
6QC0
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PCNA complex with Cdt2 C-terminal PIP-box peptide
分子名称: Denticleless protein homolog, Proliferating cell nuclear antigen
著者Perrakis, A.P, von Castelmur, E.
登録日2018-12-25
公開日2019-01-23
最終更新日2024-05-15
実験手法X-RAY DIFFRACTION (3.5 Å)
主引用文献Direct binding of Cdt2 to PCNA is important for targeting the CRL4Cdt2E3 ligase activity to Cdt1.
Life Sci Alliance, 1, 2018
6QCG
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PCNA complex with Cdt1 N-terminal PIP-box peptide
分子名称: DNA replication factor Cdt1, Proliferating cell nuclear antigen
著者Perrakis, A, von Castelmur, E.
登録日2018-12-28
公開日2019-01-23
実験手法X-RAY DIFFRACTION (3.4 Å)
主引用文献Direct binding of Cdt2 to PCNA is important for targeting the CRL4Cdt2E3 ligase activity to Cdt1.
Life Sci Alliance, 1, 2018
8PPN
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Galectin-3 carbohydrate recognition domain in complex with thiodigalactoside at 1.8 resolution
分子名称: 1-thio-beta-D-galactopyranose-(1-1)-beta-D-galactopyranose, CHLORIDE ION, GLYCEROL, ...
著者Tsagkarakou, A.S, Leonidas, D.D.
登録日2023-07-07
公開日2023-09-13
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Strong Binding of C -Glycosylic1,2-Thiodisaccharides to Galectin-3─Enthalpy-Driven Affinity Enhancement by Water-Mediated Hydrogen Bonds.
J.Med.Chem., 66, 2023
7BFZ
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X-ray structure of human prostate-specific membrane antigen(PSMA) in complex with a inhibitor Glu-490
分子名称: (((S)-1-carboxy-5-((E)-2-cyano-3-(5-(1-(3-methoxy-3-oxopropyl)-1,2,3,4-tetrahydroquinolin-6-yl)thiophen-2-yl)acrylamido)pentyl)carbamoyl)-L-glutamic acid, 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Rakhimbekova, A, Motlova, L, Barinka, C.
登録日2021-01-05
公開日2021-08-18
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.73 Å)
主引用文献A prostate-specific membrane antigen activated molecular rotor for real-time fluorescence imaging.
Nat Commun, 12, 2021
8OJM
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Galectin-3 in complex with 2,6-anhydro-3-deoxy-3-S-(beta-D-galactopyranosyl)-3-thio-D-glycero-D-galacto-heptonamide
分子名称: (2~{R},3~{S},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxane-2-carboxamide, 1-thio-beta-D-galactopyranose, Galectin-3, ...
著者Tsagkarakou, A.S, Leonidas, D.D.
登録日2023-03-24
公開日2023-09-13
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Strong Binding of C -Glycosylic1,2-Thiodisaccharides to Galectin-3─Enthalpy-Driven Affinity Enhancement by Water-Mediated Hydrogen Bonds.
J.Med.Chem., 66, 2023
8OJI
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Galectin-3 in complex with Methyl 2,6-anhydro-3-deoxy-3-S-(b-D-galactopyranosyl)-3-thio-D-glycero-L-altro-heptonate
分子名称: 1-thio-beta-D-galactopyranose, CHLORIDE ION, Galectin-3, ...
著者Tsagkarakou, A.S, Leonidas, D.D.
登録日2023-03-24
公開日2023-09-13
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Strong Binding of C -Glycosylic1,2-Thiodisaccharides to Galectin-3─Enthalpy-Driven Affinity Enhancement by Water-Mediated Hydrogen Bonds.
J.Med.Chem., 66, 2023
8OJK
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Galectin-3 in complex with 2,6-anhydro-3-deoxy-3-S-(beta-D-galactopyranosyl)-3-thio-D-glycero-L-altro-heptonamide
分子名称: (2~{R},4~{R},5~{R},6~{R})-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxane-2-carboxamide, 1-thio-beta-D-galactopyranose, Galectin-3, ...
著者Tsagkarakou, A.S, Leonidas, D.D.
登録日2023-03-24
公開日2023-09-13
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Strong Binding of C -Glycosylic1,2-Thiodisaccharides to Galectin-3─Enthalpy-Driven Affinity Enhancement by Water-Mediated Hydrogen Bonds.
J.Med.Chem., 66, 2023
8OJO
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Galectin-3 in complex with 2,6-Anhydro-5-S-(beta-D-galactopyranosyl)-5-thio-D-altritol
分子名称: 1-deoxy-alpha-D-mannopyranose, 1-thio-beta-D-galactopyranose, Galectin-3, ...
著者Tsagkarakou, A.S, Leonidas, D.D.
登録日2023-03-24
公開日2023-09-13
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Strong Binding of C -Glycosylic1,2-Thiodisaccharides to Galectin-3─Enthalpy-Driven Affinity Enhancement by Water-Mediated Hydrogen Bonds.
J.Med.Chem., 66, 2023
4MB7
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Crystal Structure of a viral DNA glycosylase
分子名称: Endonuclease 8-like L720, SULFATE ION, ZINC ION
著者Prakash, A, Eckenroth, B.E, Doublie, S.
登録日2013-08-19
公開日2013-10-30
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.04 Å)
主引用文献Structural investigation of a viral ortholog of human NEIL2/3 DNA glycosylases.
Dna Repair, 12, 2013
4NRW
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MvNei1-G86D
分子名称: 5'-D(*CP*GP*TP*CP*CP*AP*(3DR)P*GP*TP*CP*TP*AP*C)-3', 5'-D(*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*G)-3', formamidopyrimidine-DNA glycosylase
著者Prakash, A, Doublie, S.
登録日2013-11-27
公開日2014-01-01
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.845 Å)
主引用文献Genome and cancer single nucleotide polymorphisms of the human NEIL1 DNA glycosylase: Activity, structure, and the effect of editing.
Dna Repair, 14, 2014
1WS4
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Crystal structure of Jacalin- Me-alpha-Mannose complex: Promiscuity vs Specificity
分子名称: Agglutinin alpha chain, Agglutinin beta-3 chain, methyl alpha-D-galactopyranoside, ...
著者Jeyaprakash, A.A, Jayashree, G, Mahanta, S.K, Sekar, K, Surolia, A, Vijayan, M.
登録日2004-10-31
公開日2005-03-29
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structural basis for the energetics of jacalin-sugar interactions: promiscuity versus specificity
J.Mol.Biol., 347, 2005
1WS5
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Crystal structure of Jacalin-Me-alpha-Mannose complex: Promiscuity vs Specificity
分子名称: Agglutinin alpha chain, Agglutinin beta-3 chain, methyl alpha-D-mannopyranoside
著者Jeyaprakash, A.A, Jayashree, G, Mahanta, S.K, Sekar, K, Surolia, A, Vijayan, M.
登録日2004-10-31
公開日2005-03-29
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structural basis for the energetics of jacalin-sugar interactions: promiscuity versus specificity
J.Mol.Biol., 347, 2005

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