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PDB: 2930 results

1TDB
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BU of 1tdb by Molmil
STRUCTURES OF THYMIDYLATE SYNTHASE WITH A C-TERMINAL DELETION: ROLE OF THE C-TERMINUS IN ALIGNMENT OF D/UMP AND CH2H4FOLATE
Descriptor: 5-FLUORO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE, THYMIDYLATE SYNTHASE
Authors:Perry, K.M, Carreras, C.W, Chang, L.C, Santi, D.V, Stroud, R.M.
Deposit date:1993-02-15
Release date:1993-07-15
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Structures of thymidylate synthase with a C-terminal deletion: role of the C-terminus in alignment of 2'-deoxyuridine 5'-monophosphate and 5,10-methylenetetrahydrofolate.
Biochemistry, 32, 1993
1Y6I
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Synechocystis GUN4
Descriptor: Mg-chelatase cofactor GUN4
Authors:Verdecia, M.A, Larkin, R.M, Ferrer, J.L, Riek, R, Chory, J, Noel, J.P.
Deposit date:2004-12-06
Release date:2005-05-31
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Structure of the Mg-chelatase cofactor GUN4 reveals a novel hand-shaped fold for porphyrin binding
Plos Biol., 3, 2005
6GPE
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BU of 6gpe by Molmil
Crystal Structure of the CsiD Glutarate Hydroxylase
Descriptor: FE (II) ION, Protein CsiD
Authors:Williams, R.M, Mayans, O, Hartig, J.S.
Deposit date:2018-06-05
Release date:2018-12-12
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Widespread bacterial lysine degradation proceeding via glutarate and L-2-hydroxyglutarate.
Nat Commun, 9, 2018
1JTQ
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BU of 1jtq by Molmil
E. coli TS Complex with dUMP and the Pyrrolo(2,3-d)pyrimidine-based Antifolate LY341770
Descriptor: 2'-DEOXYURIDINE 5'-MONOPHOSPHATE, 2-{4-[2-(2-AMINO-4-OXO-4,7-DIHYDRO-3H-PYRROLO[2,3-D]PYRIMIDIN-5-YL)-ETHYL]-BENZOYLAMINO}-4-(2H-TETRAZOL-5-YL)-BUTYRIC ACID, THYMIDYLATE SYNTHASE
Authors:Sayre, P.H, Finer-Moore, J.S, Fritz, T.A, Biermann, D, Gates, S.B, MacKellar, W.C, Patel, V.F, Stroud, R.M.
Deposit date:2001-08-21
Release date:2001-09-19
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Multi-targeted antifolates aimed at avoiding drug resistance form covalent closed inhibitory complexes with human and Escherichia coli thymidylate synthases.
J.Mol.Biol., 313, 2001
1OSH
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BU of 1osh by Molmil
A Chemical, Genetic, and Structural Analysis of the nuclear bile acid receptor FXR
Descriptor: Bile acid receptor, METHYL 3-{3-[(CYCLOHEXYLCARBONYL){[4'-(DIMETHYLAMINO)BIPHENYL-4-YL]METHYL}AMINO]PHENYL}ACRYLATE
Authors:Downes, M, Verdecia, M.A, Roecker, A.J, Hughes, R, Hogenesch, J.B, Kast-Woelbern, H.R, Bowman, M.E, Ferrer, J.-L, Anisfeld, A.M, Edwards, P.A, Rosenfeld, J.M, Alvarez, J.G.A, Noel, J.P, Nicolaou, K.C, Evans, R.M.
Deposit date:2003-03-19
Release date:2003-09-23
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:A chemical, genetic, and structural analysis of the nuclear bile acid receptor FXR
Mol.Cell, 11, 2003
1YT0
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BU of 1yt0 by Molmil
Crystal Structure of the Unliganded Form of GRP94, the ER Hsp90: Basis for Nucleotide-Induced Conformational Change, GRP94N(DELTA)41 APO CRYSTAL SOAKED WITH ADP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Endoplasmin, MAGNESIUM ION, ...
Authors:Dollins, D.E, Immormino, R.M, Gewirth, D.T.
Deposit date:2005-02-09
Release date:2005-06-14
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structure of Unliganded GRP94, the Endoplasmic Reticulum Hsp90: BASIS FOR NUCLEOTIDE-INDUCED CONFORMATIONAL CHANGE
J.Biol.Chem., 280, 2005
1YT1
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BU of 1yt1 by Molmil
Crystal Structure of the Unliganded Form of GRP94, the ER Hsp90: Basis for Nucleotide-Induced Conformational Change, GRP94N(DELTA)41 APO CRYSTAL
Descriptor: Endoplasmin, PENTAETHYLENE GLYCOL, TETRAETHYLENE GLYCOL
Authors:Dollins, D.E, Immormino, R.M, Gewirth, D.T.
Deposit date:2005-02-09
Release date:2005-06-14
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure of Unliganded GRP94, the Endoplasmic Reticulum Hsp90: BASIS FOR NUCLEOTIDE-INDUCED CONFORMATIONAL CHANGE
J.Biol.Chem., 280, 2005
6EN9
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BU of 6en9 by Molmil
E. coli Hydrogenase-2 (hydrogen reduced form)
Descriptor: CARBONMONOXIDE-(DICYANO) IRON, FE3-S4 CLUSTER, Hydrogenase-2 large chain, ...
Authors:Carr, S.B, Beaton, S.E, Evans, R.M, Armstrong, F.A.
Deposit date:2017-10-04
Release date:2018-04-18
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:The structure of hydrogenase-2 fromEscherichia coli: implications for H2-driven proton pumping.
Biochem. J., 475, 2018
1YLR
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BU of 1ylr by Molmil
The structure of E.coli nitroreductase with bound acetate, crystal form 1
Descriptor: ACETATE ION, FLAVIN MONONUCLEOTIDE, Oxygen-insensitive NAD(P)H nitroreductase
Authors:Race, P.R, Lovering, A.L, Green, R.M, Ossor, A, White, S.A, Searle, P.F, Wrighton, C.J, Hyde, E.I.
Deposit date:2005-01-19
Release date:2005-02-08
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural and mechanistic studies of Escherichia coli nitroreductase with the antibiotic nitrofurazone. Reversed binding orientations in different redox states of the enzyme.
J.Biol.Chem., 280, 2005
1LDA
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BU of 1lda by Molmil
CRYSTAL STRUCTURE OF THE E. COLI GLYCEROL FACILITATOR (GLPF) WITHOUT SUBSTRATE GLYCEROL
Descriptor: Glycerol uptake facilitator protein, octyl beta-D-glucopyranoside
Authors:Nollert, P, Miercke, L.J.W, O'Connell, J, Stroud, R.M.
Deposit date:2002-04-08
Release date:2002-05-08
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Control of the selectivity of the aquaporin water channel family by global orientational tuning.
Science, 296, 2002
1LDI
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BU of 1ldi by Molmil
CRYSTAL STRUCTURE OF THE E. COLI GLYCEROL FACILITATOR (GLPF) WITHOUT SUBSTRATE GLYCEROL
Descriptor: Glycerol uptake facilitator protein, octyl beta-D-glucopyranoside
Authors:Nollert, P, Miercke, L.J.W, O'Connell, J, Stroud, R.M.
Deposit date:2002-04-08
Release date:2002-05-08
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Control of the selectivity of the aquaporin water channel family by global orientational tuning.
Science, 296, 2002
4K5Y
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BU of 4k5y by Molmil
Crystal structure of human corticotropin-releasing factor receptor 1 (CRF1R) in complex with the antagonist CP-376395
Descriptor: (1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate, (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, 3,6-dimethyl-N-(pentan-3-yl)-2-(2,4,6-trimethylphenoxy)pyridin-4-amine, ...
Authors:Hollenstein, K, Kean, J, Bortolato, A, Cheng, R.K.Y, Dore, A.S, Jazayeri, A, Cooke, R.M, Weir, M, Marshall, F.H.
Deposit date:2013-04-15
Release date:2013-07-17
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.977 Å)
Cite:Structure of class B GPCR corticotropin-releasing factor receptor 1.
Nature, 499, 2013
1YNY
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BU of 1yny by Molmil
Molecular Structure of D-Hydantoinase from a Bacillus sp. AR9: Evidence for mercury inhibition
Descriptor: D-Hydantoinase, MANGANESE (II) ION
Authors:Radha Kishan, K.V, Vohra, R.M, Ganeshan, K, Agrawal, V, Sharma, V.M, Sharma, R.
Deposit date:2005-01-26
Release date:2005-03-01
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Molecular structure of D-hydantoinase from Bacillus sp. AR9: evidence for mercury inhibition.
J.Mol.Biol., 347, 2005
1YT2
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BU of 1yt2 by Molmil
Crystal Structure of the Unliganded Form of GRP94, the ER Hsp90: Basis for Nucleotide-Induced Conformational Change, GRP94N APO CRYSTAL
Descriptor: Endoplasmin, TETRAETHYLENE GLYCOL
Authors:Dollins, D.E, Immormino, R.M, Gewirth, D.T.
Deposit date:2005-02-09
Release date:2005-06-14
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (3.25 Å)
Cite:Structure of Unliganded GRP94, the Endoplasmic Reticulum Hsp90: BASIS FOR NUCLEOTIDE-INDUCED CONFORMATIONAL CHANGE
J.Biol.Chem., 280, 2005
1YTI
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BU of 1yti by Molmil
SIV PROTEASE CRYSTALLIZED WITH PEPTIDE PRODUCT
Descriptor: PEPTIDE PRODUCT, SIV PROTEASE
Authors:Rose, R.B, Craik, C.S, Douglas, N.L, Stroud, R.M.
Deposit date:1996-08-01
Release date:1997-03-12
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Three-dimensional structures of HIV-1 and SIV protease product complexes.
Biochemistry, 35, 1996
4E02
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BU of 4e02 by Molmil
Crystal structure of branched-chain alpha-ketoacid dehydrogenase kinase/(S)-2-chloro-3-phenylpropanoic acid complex with AMPPNP
Descriptor: (S)-2-chloro-3-phenylpropanoic acid, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ...
Authors:Tso, S.C, Chuang, J.L, Gui, W.J, Wynn, R.M, Li, J, Chuang, D.T.
Deposit date:2012-03-02
Release date:2013-03-13
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.1547 Å)
Cite:Structures of branched-chain alpha-ketoacid dehydrogenase kinase-inhibitor complexes
To be Published
1QRR
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BU of 1qrr by Molmil
CRYSTAL STRUCTURE OF SQD1 PROTEIN COMPLEX WITH NAD AND UDP-GLUCOSE
Descriptor: NICOTINAMIDE-ADENINE-DINUCLEOTIDE, SULFATE ION, URIDINE-5'-DIPHOSPHATE-GLUCOSE, ...
Authors:Mulichak, A.M, Theisen, M.J, Essigmann, B, Benning, C, Garavito, R.M.
Deposit date:1999-06-15
Release date:1999-11-10
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of SQD1, an enzyme involved in the biosynthesis of the plant sulfolipid headgroup donor UDP-sulfoquinovose.
Proc.Natl.Acad.Sci.USA, 96, 1999
1QBV
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BU of 1qbv by Molmil
CRYSTAL STRUCTURE OF THROMBIN COMPLEXED WITH AN GUANIDINE-MIMETIC INHIBITOR
Descriptor: Hirudin, THROMBIN (HEAVY CHAIN), THROMBIN (LIGHT CHAIN), ...
Authors:Bone, R, Lu, T, Illig, C.R, Soll, R.M, Spurlino, J.C.
Deposit date:1999-04-27
Release date:1999-10-27
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural analysis of thrombin complexed with potent inhibitors incorporating a phenyl group as a peptide mimetic and aminopyridines as guanidine substitutes.
J.Med.Chem., 41, 1998
4DXO
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BU of 4dxo by Molmil
Crystal Structure of a reconstructed Kaede-type Red Fluorescent Protein, LEA X(6)
Descriptor: LEA X(6) GFP-LIKE PROTEINS, SODIUM ION
Authors:Kim, H, Fromme, R, Wachter, R.M.
Deposit date:2012-02-27
Release date:2013-02-27
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:A hinge migration mechanism unlocks the evolution of green-to-red photoconversion in GFP-like proteins.
Structure, 23, 2015
4DE9
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BU of 4de9 by Molmil
LytR-CPS2A-psr family protein YwtF (TagT) with bound octaprenyl pyrophosphate lipid
Descriptor: (2Z,6Z,10Z,14Z,18Z,22E,26E)-3,7,11,15,19,23,27,31-octamethyldotriaconta-2,6,10,14,18,22,26,30-octaen-1-yl trihydrogen diphosphate, Putative transcriptional regulator ywtF
Authors:Eberhardt, A, Hoyland, C.N, Vollmer, D, Bisle, S, Cleverley, R.M, Johnsborg, O, Havarstein, S, Lewis, R.J, Vollmer, W.
Deposit date:2012-01-20
Release date:2012-04-04
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.787 Å)
Cite:Attachment of Capsular Polysaccharide to the Cell Wall in Streptococcus pneumoniae.
Microb Drug Resist, 18, 2012
4DXN
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BU of 4dxn by Molmil
Crystal Structure of a reconstructed Kaede-type Red Fluorescent Protein, Least Evolved Ancestor (LEA)
Descriptor: LEAST EVOLVED ANCESTOR (LEA) GFP-LIKE PROTEINS, SULFATE ION
Authors:Kim, H, Fromme, R, Wachter, R.M.
Deposit date:2012-02-27
Release date:2013-02-27
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Acid-Base Catalysis and Crystal Structures of a Least Evolved Ancestral GFP-like Protein Undergoing Green-to-Red Photoconversion.
Biochemistry, 52, 2013
2AE9
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BU of 2ae9 by Molmil
Solution Structure of the theta subunit of DNA polymerase III from E. coli
Descriptor: DNA polymerase III, theta subunit
Authors:Mueller, G.A, Kirby, T.W, Derose, E.F, Li, D, Schaaper, R.M, London, R.E.
Deposit date:2005-07-21
Release date:2005-10-18
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Nuclear Magnetic Resonance Solution Structure of the Escherichia coli DNA Polymerase III {theta} Subunit.
J.Bacteriol., 187, 2005
1ZW9
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BU of 1zw9 by Molmil
Yeast HSP82 in complex with the Novel HSP90 Inhibitor 8-(6-Bromo-benzo[1,3]dioxol-5-ylsulfanyl)-9-(3-isopropylamino-propyl)-adenine
Descriptor: 8-(6-BROMO-BENZO[1,3]DIOXOL-5-YLSULFANYL)-9-(3-ISOPROPYLAMINO-PROPYL)-ADENINE, HSP82
Authors:Immormino, R.M, Gewirth, D.T, Chiosis, G.
Deposit date:2005-06-03
Release date:2006-06-13
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Inhibitory Ligands Adopt Different Conformations When Bound to Hsp90 or GRP94: Implications for Paralog-specific Drug Design
To be Published
2KCE
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BU of 2kce by Molmil
BINDING OF THE ANTICANCER DRUG ZD1694 TO E. COLI THYMIDYLATE SYNTHASE: ASSESSING SPECIFICITY AND AFFINITY
Descriptor: 2'-DEOXYURIDINE 5'-MONOPHOSPHATE, THYMIDYLATE SYNTHASE, TOMUDEX
Authors:Rutenber, E.E, Stroud, R.M.
Deposit date:1997-06-09
Release date:1997-11-19
Last modified:2024-06-05
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Binding of the anticancer drug ZD1694 to E. coli thymidylate synthase: assessing specificity and affinity.
Structure, 4, 1996
1QRV
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BU of 1qrv by Molmil
CRYSTAL STRUCTURE OF THE COMPLEX OF HMG-D AND DNA
Descriptor: DNA (5'-D(*GP*CP*GP*AP*TP*AP*TP*CP*GP*C)-3'), HIGH MOBILITY GROUP PROTEIN D, SODIUM ION
Authors:Murphy IV, F.V, Sweet, R.M, Churchill, M.E.A.
Deposit date:1999-06-15
Release date:1999-12-18
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:The structure of a chromosomal high mobility group protein-DNA complex reveals sequence-neutral mechanisms important for non-sequence-specific DNA recognition.
EMBO J., 18, 1999

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