Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 2342 results

5ZVE
DownloadVisualize
BU of 5zve by Molmil
The crystal structure of NSun6 from Pyrococcus horikoshii with SAH
Descriptor: 389aa long hypothetical nucleolar protein, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Li, J, Liu, R.J, Wang, E.D.
Deposit date:2018-05-10
Release date:2018-12-12
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.178 Å)
Cite:Archaeal NSUN6 catalyzes m5C72 modification on a wide-range of specific tRNAs.
Nucleic Acids Res., 47, 2019
5A9D
DownloadVisualize
BU of 5a9d by Molmil
Crystal structure of the extracellular domain of PepT1
Descriptor: GLYCEROL, SOLUTE CARRIER FAMILY 15 MEMBER 1
Authors:Beale, J.H, Bird, L.E, Owens, R.J, Newstead, S.
Deposit date:2015-07-20
Release date:2015-09-09
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal Structures of the Extracellular Domain from Pept1 and Pept2 Provide Novel Insights Into Mammalian Peptide Transport
Structure, 23, 2015
2CO2
DownloadVisualize
BU of 2co2 by Molmil
Salmonella enterica SafA pilin in complex with a 19-residue SafA Nte peptide (F3A mutant)
Descriptor: SAFA N-TERMINAL EXTENSION, SAFA PILUS SUBUNIT
Authors:Remaut, H, Rose, R.J, Hannan, T.J, Hultgren, S.J, Radford, S.E, Ashcroft, A.E, Waksman, G.
Deposit date:2006-05-25
Release date:2006-06-27
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Donor-Strand Exchange in Chaperone-Assisted Pilus Assembly Proceeds Through a Concerted Beta-Strand Displacement Mechanism
Mol.Cell, 22, 2006
5ZVH
DownloadVisualize
BU of 5zvh by Molmil
The crystal structure of NSun6 from Pyrococcus horikoshii with SFG
Descriptor: 389aa long hypothetical nucleolar protein, SINEFUNGIN
Authors:Li, J, Liu, R.J, Wang, E.D.
Deposit date:2018-05-10
Release date:2018-12-12
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Archaeal NSUN6 catalyzes m5C72 modification on a wide-range of specific tRNAs.
Nucleic Acids Res., 47, 2019
1WUU
DownloadVisualize
BU of 1wuu by Molmil
crystal structure of human galactokinase complexed with MgAMPPNP and galactose
Descriptor: Galactokinase, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ...
Authors:Thoden, J.B, Timson, D.J, Reece, R.J, Holden, H.M.
Deposit date:2004-12-08
Release date:2004-12-28
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Molecular Structure of Human Galactokinase: IMPLICATIONS FOR TYPE II GALACTOSEMIA
J.Biol.Chem., 280, 2005
2BSW
DownloadVisualize
BU of 2bsw by Molmil
Crystal structure of a glyphosate-N-acetyltransferase obtained by DNA shuffling.
Descriptor: GLYCEROL, GLYPHOSATE N-ACETYLTRANSFERASE, OXIDIZED COENZYME A, ...
Authors:Keenan, R.J, Siehl, D.L, Gorton, R, Castle, L.A.
Deposit date:2005-05-24
Release date:2005-06-08
Last modified:2015-10-14
Method:X-RAY DIFFRACTION (1.63 Å)
Cite:DNA Shuffling as a Tool for Protein Crystallization.
Proc.Natl.Acad.Sci.USA, 102, 2005
2C5C
DownloadVisualize
BU of 2c5c by Molmil
Shiga-like toxin 1 B subunit complexed with a bivalent inhibitor
Descriptor: DIETHYL PROPANE-1,3-DIYLBISCARBAMATE, SHIGA-LIKE TOXIN 1 B SUBUNIT, SULFATE ION, ...
Authors:Dodd, R.B, Read, R.J.
Deposit date:2005-10-26
Release date:2006-11-27
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.94 Å)
Cite:Extensive Cross-Linking of the Shiga-Like Toxin 1 B Subunit by a Bivalent Ligand
To be Published
3P9Z
DownloadVisualize
BU of 3p9z by Molmil
Crystal structure of uroporphyrinogen-III synthetase from Helicobacter pylori 26695
Descriptor: MALONATE ION, Uroporphyrinogen III cosynthase (HemD)
Authors:Nocek, B, Stein, A, Chhor, G, Fenske, R.J, Buck, K, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2010-10-18
Release date:2010-11-03
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of uroporphyrinogen-III synthetase from Helicobacter pylori 26695
To be Published
5TN2
DownloadVisualize
BU of 5tn2 by Molmil
Solution Structure of the C-terminal multimerization domain of the master biofilm-regulator SinR from Bacillus subtilis
Descriptor: HTH-type transcriptional regulator SinR
Authors:Draughn, G.L, Bobay, B.G, Stowe, S.D, Thompson, R.J, Cavanagh, J.
Deposit date:2016-10-13
Release date:2017-10-25
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:The Solution Structures and Interaction of SinR and SinI: Elucidating the Mechanism of Action of the Master Regulator Switch for Biofilm Formation in Bacillus subtilis.
J.Mol.Biol., 2019
5BTA
DownloadVisualize
BU of 5bta by Molmil
Crystal structure of a topoisomerase II complex
Descriptor: 1-cyclopropyl-6-fluoro-8-methoxy-7-[(4aS,7aS)-octahydro-6H-pyrrolo[3,4-b]pyridin-6-yl]-4-oxo-1,4-dihydroquinoline-3-carboxylic acid, DNA gyrase subunit A, DNA gyrase subunit B, ...
Authors:Blower, T.R, Williamson, B.H, Kerns, R.J, Berger, J.M.
Deposit date:2015-06-02
Release date:2016-03-02
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Crystal structure and stability of gyrase-fluoroquinolone cleaved complexes from Mycobacterium tuberculosis.
Proc.Natl.Acad.Sci.USA, 113, 2016
5TN0
DownloadVisualize
BU of 5tn0 by Molmil
Solution Structure of the N-terminal DNA-binding domain of the master biofilm-regulator SinR from Bacillus subtilis
Descriptor: HTH-type transcriptional regulator SinR
Authors:Draughn, G.L, Bobay, B.G, Stowe, S.D, Thompson, R.J, Cavanagh, J.
Deposit date:2016-10-13
Release date:2017-10-25
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:The Solution Structures and Interaction of SinR and SinI: Elucidating the Mechanism of Action of the Master Regulator Switch for Biofilm Formation in Bacillus subtilis.
J.Mol.Biol., 2019
5TDX
DownloadVisualize
BU of 5tdx by Molmil
Resurrected Ancestral Hydroxynitrile Lyase from Flowering Plants
Descriptor: Ancestral Hydroxynitrile Lyase 1, GLYCEROL
Authors:Jones, B.J, Evans, R, Wilmot, C.M, Kazlauskas, R.J.
Deposit date:2016-09-20
Release date:2017-10-11
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:Larger active site in an ancestral hydroxynitrile lyase increases catalytically promiscuous esterase activity.
Plos One, 15, 2020
3OKL
DownloadVisualize
BU of 3okl by Molmil
Crystal structure of S25-39 in complex with Kdo(2.8)Kdo
Descriptor: 3-deoxy-alpha-D-manno-oct-2-ulopyranosonic acid-(2-8)-prop-2-en-1-yl 3-deoxy-alpha-D-manno-oct-2-ulopyranosidonic acid, S25-39 Fab (IgG1k) heavy chain, S25-39 Fab (IgG1k) light chain, ...
Authors:Blackler, R.J, Evans, S.V.
Deposit date:2010-08-25
Release date:2011-04-06
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:A Common NH53K Mutation in the Combining Site of Antibodies Raised against Chlamydial LPS Glycoconjugates Significantly Increases Avidity.
Biochemistry, 50, 2011
5TMX
DownloadVisualize
BU of 5tmx by Molmil
Solution Structure of SinI, antagonist to the master biofilm-regulator SinR in Bacillus subtilis
Descriptor: Protein SinI
Authors:Draughn, G.L, Bobay, B.G, Stowe, S.D, Thompson, R.J, Cavanagh, J.
Deposit date:2016-10-13
Release date:2017-10-25
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:The Solution Structures and Interaction of SinR and SinI: Elucidating the Mechanism of Action of the Master Regulator Switch for Biofilm Formation in Bacillus subtilis.
J.Mol.Biol., 2019
5SYQ
DownloadVisualize
BU of 5syq by Molmil
Solution structure of Aquifex aeolicus Aq1974
Descriptor: Uncharacterized protein aq_1974
Authors:Sachleben, J.R, Gawlak, G, Hoey, R.J, Liu, G, Joachimiak, A, Montelione, G.T, Koide, S, Northeast Structural Genomics Consortium (NESG), Midwest Center for Structural Genomics (MCSG)
Deposit date:2016-08-11
Release date:2016-09-28
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Aromatic claw: A new fold with high aromatic content that evades structural prediction.
Protein Sci., 26, 2017
1WN4
DownloadVisualize
BU of 1wn4 by Molmil
NMR Structure of VoNTR
Descriptor: VoNTR protein
Authors:Dutton, J.L, Renda, R.F, Waine, C, Clark, R.J, Daly, N.L, Jennings, C.V, Anderson, M.A, Craik, D.J.
Deposit date:2004-07-27
Release date:2004-09-14
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Conserved structural and sequence elements implicated in the processing of gene-encoded circular proteins
J.Biol.Chem., 279, 2004
2BNJ
DownloadVisualize
BU of 2bnj by Molmil
The xylanase TA from Thermoascus aurantiacus utilizes arabinose decorations of xylan as significant substrate specificity determinants.
Descriptor: 3-(4-HYDROXY-3-METHOXYPHENYL)-2-PROPENOIC ACID, ENDO-1,4-BETA-XYLANASE, alpha-L-arabinofuranose-(1-3)-beta-D-xylopyranose-(1-4)-beta-D-xylopyranose
Authors:Vardakou, M, Murray, J.W, Flint, J, Christakopoulos, P, Lewis, R.J, Gilbert, H.J.
Deposit date:2005-03-25
Release date:2005-09-07
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:A Family 10 Thermoascus Aurantiacus Xylanase Utilizes Arabinose Decorations of Xylan as Significant Substrate Specificity Determinants.
J.Mol.Biol., 352, 2005
5U4W
DownloadVisualize
BU of 5u4w by Molmil
Cryo-EM Structure of Immature Zika Virus
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, E protein, M protein, ...
Authors:Mangala Prasad, V, Miller, A.S, Klose, T, Sirohi, D, Buda, G, Jiang, W, Kuhn, R.J, Rossmann, M.G.
Deposit date:2016-12-06
Release date:2017-01-11
Last modified:2020-07-29
Method:ELECTRON MICROSCOPY (9.1 Å)
Cite:Structure of the immature Zika virus at 9 angstrom resolution.
Nat. Struct. Mol. Biol., 24, 2017
3OKO
DownloadVisualize
BU of 3oko by Molmil
Crystal structure of S25-39 in complex with Kdo(2.8)Kdo(2.4)Kdo
Descriptor: 3-deoxy-alpha-D-manno-oct-2-ulopyranosonic acid-(2-8)-3-deoxy-alpha-D-manno-oct-2-ulopyranosonic acid-(2-4)-prop-2-en-1-yl 3-deoxy-alpha-D-manno-oct-2-ulopyranosidonic acid, S25-39 Fab (IgG1k) heavy chain, S25-39 Fab (IgG1k) light chain, ...
Authors:Blackler, R.J, Evans, S.V.
Deposit date:2010-08-25
Release date:2011-04-06
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:A Common NH53K Mutation in the Combining Site of Antibodies Raised against Chlamydial LPS Glycoconjugates Significantly Increases Avidity.
Biochemistry, 50, 2011
2C3A
DownloadVisualize
BU of 2c3a by Molmil
Structure of unliganded HSV gD reveals a mechanism for receptor- mediated activation of virus entry
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, GLYCOPROTEIN D, ...
Authors:Krummenacher, C, Supekar, V.M, Whitbeck, J.C, Lazear, E, Connolly, S.A, Eisenberg, R.J, Cohen, G.H, Wiley, D.C, Carfi, A.
Deposit date:2005-10-05
Release date:2005-12-21
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure of Unliganded Hsv Gd Reveals a Mechanism for Receptor-Mediated Activation of Virus Entry.
Embo J., 24, 2005
5BTG
DownloadVisualize
BU of 5btg by Molmil
Crystal structure of a topoisomerase II complex
Descriptor: (3S)-9-fluoro-3-methyl-10-(4-methylpiperazin-1-yl)-7-oxo-2,3-dihydro-7H-[1,4]oxazino[2,3,4-ij]quinoline-6-carboxylic acid, DNA gyrase subunit A, DNA gyrase subunit B, ...
Authors:Blower, T.R, Williamson, B.H, Kerns, R.J, Berger, J.M.
Deposit date:2015-06-03
Release date:2016-03-02
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure and stability of gyrase-fluoroquinolone cleaved complexes from Mycobacterium tuberculosis.
Proc.Natl.Acad.Sci.USA, 113, 2016
3OPC
DownloadVisualize
BU of 3opc by Molmil
Crystal structure of FlgN chaperone from Bordetella pertussis
Descriptor: GLYCEROL, Uncharacterized protein
Authors:Michalska, K, Chhor, G, Bearden, J, Fenske, R.J, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2010-08-31
Release date:2010-09-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.09 Å)
Cite:Crystal structure of FlgN chaperone from Bordetella pertussis
To be Published
2C4P
DownloadVisualize
BU of 2c4p by Molmil
Crystal structure of human ubiquitin-conjugating enzyme UbcH5A
Descriptor: UBIQUITIN-CONJUGATING ENZYME E2 D1
Authors:Dodd, R.B, Read, R.J.
Deposit date:2005-10-21
Release date:2006-11-22
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Structures of Two Human Ubiquitin-Conjugating Enzymes from Twinned Crystals
To be Published
5U98
DownloadVisualize
BU of 5u98 by Molmil
The crystal structure of a self-peptide complexed to Abacavir and HLA-B*57:01
Descriptor: Beta-2-microglobulin, HLA class I histocompatibility antigen, B-57 alpha chain, ...
Authors:Ostrov, D.A, Bracey, A.W, Pompeu, Y.A, Jakoncic, J, Buus, S, Buus, A.S, Schutte, R.J.
Deposit date:2016-12-15
Release date:2017-07-19
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural Elements Recognized by Abacavir-Induced T Cells.
Int J Mol Sci, 18, 2017
5U9Z
DownloadVisualize
BU of 5u9z by Molmil
Phosphoglycerol transferase GacH from Streptococcus pyogenes
Descriptor: MANGANESE (II) ION, PHOSPHOGLYCEROL TRANSFERASE
Authors:Edgar, R.J, Korotkova, N, Korotkov, K.V.
Deposit date:2016-12-18
Release date:2017-12-20
Last modified:2019-12-11
Method:X-RAY DIFFRACTION (2.001 Å)
Cite:Discovery of glycerol phosphate modification on streptococcal rhamnose polysaccharides.
Nat.Chem.Biol., 15, 2019

225946

PDB entries from 2024-10-09

PDB statisticsPDBj update infoContact PDBjnumon