Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 27201 results

4REN
DownloadVisualize
BU of 4ren by Molmil
Crystal structure of UDP-glucose: anthocyanidin 3-O-glucosyltransferase in complex with petunidin
Descriptor: 2-(3,4-dihydroxy-5-methoxyphenyl)-3,5,7-trihydroxychromenium, GLYCEROL, UDP-glucose:anthocyanidin 3-O-glucosyltransferase
Authors:Hiromoto, T, Honjo, E, Tamada, T, Kuroki, R.
Deposit date:2014-09-23
Release date:2015-01-21
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.704 Å)
Cite:Structural basis for acceptor-substrate recognition of UDP-glucose: anthocyanidin 3-O-glucosyltransferase from Clitoria ternatea
Protein Sci., 24, 2015
5MQC
DownloadVisualize
BU of 5mqc by Molmil
Structure of black queen cell virus
Descriptor: VP1, VP2, VP3
Authors:Spurny, R, Kiem, H.H.T, Plevka, P.
Deposit date:2016-12-20
Release date:2017-01-25
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:Virion Structure of Black Queen Cell Virus, a Common Honeybee Pathogen.
J. Virol., 91, 2017
4RF6
DownloadVisualize
BU of 4rf6 by Molmil
Crystal structure of double-domain arginine kinase from Anthopleura japonicas
Descriptor: Arginine kinase
Authors:Wang, Z, Qiao, Z, Ye, S, Zhang, R.
Deposit date:2014-09-25
Release date:2015-04-08
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structure of a double-domain phosphagen kinase reveals an asymmetric arrangement of the tandem domains.
Acta Crystallogr.,Sect.D, 71, 2015
7JNV
DownloadVisualize
BU of 7jnv by Molmil
Carbonic Anhydrase II Complexed with N-(5-sulfamoyl-1,3,4-thiadiazol-2-yl)butyramide
Descriptor: Carbonic anhydrase 2, DIMETHYL SULFOXIDE, GLYCEROL, ...
Authors:Andring, J.T, McKenna, R.
Deposit date:2020-08-05
Release date:2020-11-04
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.49 Å)
Cite:Structural Basis of Nanomolar Inhibition of Tumor-Associated Carbonic Anhydrase IX: X-Ray Crystallographic and Inhibition Study of Lipophilic Inhibitors with Acetazolamide Backbone.
J.Med.Chem., 63, 2020
5MUT
DownloadVisualize
BU of 5mut by Molmil
Crystal structure of potent human Dihydroorotate Dehydrogenase inhibitors based on hydroxylated azole scaffolds
Descriptor: 2-methyl-5-oxidanyl-~{N}-[2,3,5,6-tetrakis(fluoranyl)-4-phenyl-phenyl]-1,2,3-triazole-4-carboxamide, ACETATE ION, CHLORIDE ION, ...
Authors:Goyal, P, Andersson, M, Moritzer, A.C, Sainas, S, Pippione, A.C, Boschi, D, Al-Kadaraghi, S, Lolli, M, Friemann, R.
Deposit date:2017-01-14
Release date:2017-03-08
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Design, synthesis, biological evaluation and X-ray structural studies of potent human dihydroorotate dehydrogenase inhibitors based on hydroxylated azole scaffolds.
Eur J Med Chem, 129, 2017
7JNZ
DownloadVisualize
BU of 7jnz by Molmil
Carbonic Anhydrase II Complexed with N-(5-sulfamoyl-1,3,4-thiadiazol-2-yl)cyclohexanecarboxamide
Descriptor: Carbonic anhydrase 2, DIMETHYL SULFOXIDE, GLYCEROL, ...
Authors:Andring, J.T, McKenna, R.
Deposit date:2020-08-05
Release date:2020-11-04
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.289 Å)
Cite:Structural Basis of Nanomolar Inhibition of Tumor-Associated Carbonic Anhydrase IX: X-Ray Crystallographic and Inhibition Study of Lipophilic Inhibitors with Acetazolamide Backbone.
J.Med.Chem., 63, 2020
4QQE
DownloadVisualize
BU of 4qqe by Molmil
Crystal structure of WDR5, WD repeat domain 5 in complex with compound SGC-DS-MT-0345
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, N-[2-(4-methylpiperazin-1-yl)-5-(quinolin-3-yl)phenyl]-6-oxo-4-(trifluoromethyl)-1,6-dihydropyridine-3-carboxamide, ...
Authors:Dong, A, Dombrovski, L, Wernimont, A, Smil, D, Getlik, M, Senisterra, G, Poda, G, Al-Awar, R, Bountra, C, Arrowsmith, C.H, Edwards, A.M, Brown, P.J, Schapira, M, Vedadi, M, Wu, H, Structural Genomics Consortium (SGC)
Deposit date:2014-06-27
Release date:2014-07-30
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of WDR5, WD repeat domain 5 in complex with compound SGC-DS-MT-0345
To be Published
5MGP
DownloadVisualize
BU of 5mgp by Molmil
Structural basis for ArfA-RF2 mediated translation termination on stop-codon lacking mRNAs
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Huter, P, Mueller, C, Beckert, B, Arenz, S, Berninghausen, O, Beckmann, R, Wilson, N.D.
Deposit date:2016-11-21
Release date:2016-12-14
Last modified:2017-08-30
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Structural basis for ArfA-RF2-mediated translation termination on mRNAs lacking stop codons.
Nature, 541, 2017
4R5L
DownloadVisualize
BU of 4r5l by Molmil
Crystal structure of the DnaK C-terminus (Dnak-SBD-C)
Descriptor: CALCIUM ION, Chaperone protein DnaK, PHOSPHATE ION, ...
Authors:Leu, J.I, Zhang, P, Murphy, M.E, Marmorstein, R, George, D.L.
Deposit date:2014-08-21
Release date:2014-09-10
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.9701 Å)
Cite:Structural Basis for the Inhibition of HSP70 and DnaK Chaperones by Small-Molecule Targeting of a C-Terminal Allosteric Pocket.
Acs Chem.Biol., 9, 2014
7JW3
DownloadVisualize
BU of 7jw3 by Molmil
Crystal structure of Aedes aegypti Nibbler NTD domain
Descriptor: Exonuclease mut-7 homolog
Authors:Xie, W, Sowemimo, I, Hayashi, R, Wang, J, Brennecke, J, Ameres, S.L, Patel, D.J.
Deposit date:2020-08-24
Release date:2021-01-20
Method:X-RAY DIFFRACTION (3.05 Å)
Cite:Structure-function analysis of microRNA 3'-end trimming by Nibbler.
Proc.Natl.Acad.Sci.USA, 117, 2020
5MUH
DownloadVisualize
BU of 5muh by Molmil
Crystal structure of an amyloidogenic light chain dimer H7
Descriptor: light chain dimer
Authors:Oberti, L, Rognoni, P, Russo, R, Maritan, M, Bacarizo, J, Bolognesi, M, Ricagno, S.
Deposit date:2017-01-13
Release date:2017-12-13
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Concurrent structural and biophysical traits link with immunoglobulin light chains amyloid propensity.
Sci Rep, 7, 2017
4QSF
DownloadVisualize
BU of 4qsf by Molmil
CRYSTAL STRUCTURE of AMIDOHYDROLASE PMI1525 (TARGET EFI-500319) FROM PROTEUS MIRABILIS HI4320, A COMPLEX WITH BUTYRIC ACID AND MANGANESE
Descriptor: Amidohydrolase Pmi1525, MANGANESE (II) ION, SULFATE ION, ...
Authors:Patskovsky, Y, Toro, R, Xiang, D.F, Raushel, F.M, Gerlt, J.A, Almo, S.C, Enzyme Function Initiative (EFI)
Deposit date:2014-07-03
Release date:2014-07-30
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Crystal Structure of Amidohydrolase Pmi1525 from Proteus Mirabilis Hi4320
To be Published
5MV1
DownloadVisualize
BU of 5mv1 by Molmil
Crystal structure of the E protein of the Japanese encephalitis virulent virus
Descriptor: E protein
Authors:Liu, X, Zhao, X, Na, R, Li, L, Warkentin, E, Witt, J, Lu, X, Wei, Y, Peng, G, Li, Y, Wang, J.
Deposit date:2017-01-14
Release date:2018-05-23
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:The structure differences of Japanese encephalitis virus SA14 and SA14-14-2 E proteins elucidate the virulence attenuation mechanism.
Protein Cell, 10, 2019
7K1L
DownloadVisualize
BU of 7k1l by Molmil
Crystal Structure of NSP15 Endoribonuclease from SARS CoV-2 in the Complex with Uridine-2',3'-Vanadate
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, SULFATE ION, ...
Authors:Kim, Y, Maltseva, N, Jedrzejczak, R, Endres, M, Welk, L, Chang, C, Michalska, K, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2020-09-07
Release date:2020-09-23
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Tipiracil binds to uridine site and inhibits Nsp15 endoribonuclease NendoU from SARS-CoV-2.
Commun Biol, 4, 2021
5CK9
DownloadVisualize
BU of 5ck9 by Molmil
E. coli MazF form I
Descriptor: Endoribonuclease MazF, PENTAETHYLENE GLYCOL
Authors:Zorzini, V, Loris, R.
Deposit date:2015-07-15
Release date:2016-04-06
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.898 Å)
Cite:Substrate Recognition and Activity Regulation of the Escherichia coli mRNA Endonuclease MazF.
J.Biol.Chem., 291, 2016
5CKH
DownloadVisualize
BU of 5ckh by Molmil
E. coli MazF E24A form IIb
Descriptor: Endoribonuclease MazF
Authors:Zorzini, V, Loris, R.
Deposit date:2015-07-15
Release date:2016-04-06
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.449 Å)
Cite:Substrate Recognition and Activity Regulation of the Escherichia coli mRNA Endonuclease MazF.
J.Biol.Chem., 291, 2016
7K4P
DownloadVisualize
BU of 7k4p by Molmil
Crystal structure of Kemp Eliminase HG3
Descriptor: Endo-1,4-beta-xylanase
Authors:Padua, R.A.P, Otten, R, Bunzel, A, Nguyen, V, Pitsawong, W, Patterson, M, Sui, S, Perry, S.L, Cohen, A.E, Hilvert, D, Kern, D.
Deposit date:2020-09-16
Release date:2020-12-02
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.08 Å)
Cite:How directed evolution reshapes the energy landscape in an enzyme to boost catalysis.
Science, 370, 2020
7K4S
DownloadVisualize
BU of 7k4s by Molmil
Crystal structure of Kemp Eliminase HG3.7
Descriptor: Endo-1,4-beta-xylanase, SULFATE ION
Authors:Padua, R.A.P, Otten, R, Bunzel, A, Nguyen, V, Pitsawong, W, Patterson, M, Sui, S, Perry, S.L, Cohen, A.E, Hilvert, D, Kern, D.
Deposit date:2020-09-16
Release date:2020-12-02
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2 Å)
Cite:How directed evolution reshapes the energy landscape in an enzyme to boost catalysis.
Science, 370, 2020
4RA6
DownloadVisualize
BU of 4ra6 by Molmil
Crystal structure of linker less Pyrococcus furiosus L-asparaginase
Descriptor: GLYCEROL, L-asparaginase
Authors:Sharma, P, Tomar, R, Ashish, Kundu, B.
Deposit date:2014-09-09
Release date:2014-12-10
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.503 Å)
Cite:Structural and functional insights into an archaeal L-asparaginase obtained through the linker-less assembly of constituent domains.
Acta Crystallogr.,Sect.D, 70, 2014
5CQ6
DownloadVisualize
BU of 5cq6 by Molmil
Crystal structure of the bromodomain of bromodomain adjacent to zinc finger domain protein 2B (BAZ2B) in complex with 2,6-Pyridinedicarboxylic acid (SGC - Diamond I04-1 fragment screening)
Descriptor: 1,2-ETHANEDIOL, Bromodomain adjacent to zinc finger domain protein 2B, PYRIDINE-2,6-DICARBOXYLIC ACID
Authors:Bradley, A, Pearce, N, Krojer, T, Ng, J, Talon, R, Vollmar, M, Jose, B, von Delft, F, Bountra, C, Arrowsmith, C.H, Edwards, A, Knapp, S, Structural Genomics Consortium (SGC)
Deposit date:2015-07-21
Release date:2015-09-09
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:Crystal structure of the second bromodomain of bromodomain adjancent to zinc finger domain protein 2B (BAZ2B) in complex with 2,6-Pyridinedicarboxylic acid (SGC - Diamond I04-1 fragment screening)
To be published
5MJE
DownloadVisualize
BU of 5mje by Molmil
Crystal structure of the HigB2 toxin in complex with Nb8
Descriptor: Cytotoxic translational repressor of toxin-antitoxin stability system, DI(HYDROXYETHYL)ETHER, Nanobody 8, ...
Authors:Hadzi, S, Loris, R.
Deposit date:2016-11-30
Release date:2017-04-05
Last modified:2019-10-16
Method:X-RAY DIFFRACTION (2.599 Å)
Cite:Ribosome-dependent Vibrio cholerae mRNAse HigB2 is regulated by a beta-strand sliding mechanism.
Nucleic Acids Res., 45, 2017
4QUR
DownloadVisualize
BU of 4qur by Molmil
Crystal Structure of stachydrine demethylase in complex with cyanide, oxygen, and N-methyl proline in a new orientation
Descriptor: 1-methyl-L-proline, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, COBALT HEXAMMINE(III), ...
Authors:Agarwal, R, Andi, B, Gizzi, A, Bonanno, J.B, Almo, S.C, Orville, A.M.
Deposit date:2014-07-11
Release date:2015-07-15
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.759 Å)
Cite:Tracking photoelectron induced in-crystallo enzyme catalysis
To be Published
5MTD
DownloadVisualize
BU of 5mtd by Molmil
Crystal structure of PDF from the Vibrio parahaemolyticus bacteriophage VP16T - crystal form II
Descriptor: NICKEL (II) ION, Putative uncharacterized protein orf60T, TRIETHYLENE GLYCOL, ...
Authors:Fieulaine, S, Grzela, R, Giglione, C, Meinnel, T.
Deposit date:2017-01-09
Release date:2017-09-20
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:The C-terminal residue of phage Vp16 PDF, the smallest peptide deformylase, acts as an offset element locking the active conformation.
Sci Rep, 7, 2017
7LLY
DownloadVisualize
BU of 7lly by Molmil
Oxyntomodulin-bound Glucagon-Like Peptide-1 (GLP-1) Receptor in complex with Gs protein
Descriptor: Glucagon-like peptide 1 receptor, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, ...
Authors:Wootten, D, Sexton, P.M, Belousoff, M.J, Danev, R, Zhang, X, Khoshouei, M, Venugopal, H.
Deposit date:2021-02-04
Release date:2022-01-12
Last modified:2022-01-26
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Dynamics of GLP-1R peptide agonist engagement are correlated with kinetics of G protein activation.
Nat Commun, 13, 2022
5MLD
DownloadVisualize
BU of 5mld by Molmil
Crystal Structure of RosB with bound intermediate AFP (8-demethyl-8-aminoriboflavin-5'-phosphate)
Descriptor: 8-demethyl-8-aminoriboflavin-5'-phosphate, BRAMP domain protein
Authors:Konjik, V, Bruenle, S, Demmer, U, Vanselow, A, Sandhoff, R, Mack, M, Ermler, U.
Deposit date:2016-12-06
Release date:2017-12-20
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:The crystal structure of RosB gives insights into the reaction mechanism of this first known member of a new family of flavodoxin-like enzymes
To be published

222624

數據於2024-07-17公開中

PDB statisticsPDBj update infoContact PDBjnumon