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PDB: 27201 件

7SLF
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[T:Ag+:T--pH 10.5] Metal-mediated DNA base pair in tensegrity triangle
分子名称: DNA (5'-D(*GP*AP*GP*CP*AP*GP*CP*CP*TP*GP*TP*TP*TP*GP*GP*AP*CP*AP*TP*CP*A)-3'), DNA (5'-D(P*CP*CP*AP*TP*AP*CP*A)-3'), DNA (5'-D(P*CP*TP*GP*AP*TP*GP*T)-3'), ...
著者Lu, B, Vecchioni, S, Seeman, N.C, Sha, R, Ohayon, Y.P.
登録日2021-10-24
公開日2022-10-26
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (4.83 Å)
主引用文献Heterobimetallic Base Pair Programming in Designer 3D DNA Crystals.
J.Am.Chem.Soc., 145, 2023
8C62
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Crystal structure of cisplatin/B-DNA adduct
分子名称: DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'), PLATINUM (II) ION
著者Troisi, R, Tito, G, Ferraro, G, Sica, F, Merlino, A.
登録日2023-01-11
公開日2024-01-31
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.31 Å)
主引用文献On the mechanism of action of arsenoplatins: arsenoplatin-1 binding to a B-DNA dodecamer.
Dalton Trans, 53, 2024
8C9O
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Crystal structure of SARS-CoV-2 Mpro-S144A mutant in complex with 13b-K
分子名称: 3C-like proteinase nsp5, ~{tert}-butyl ~{N}-[1-[(2~{S})-3-cyclopropyl-1-oxidanylidene-1-[[(2~{S},3~{R})-3-oxidanyl-4-oxidanylidene-1-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]-4-[(phenylmethyl)amino]butan-2-yl]amino]propan-2-yl]-2-oxidanylidene-pyridin-3-yl]carbamate
著者Ibrahim, M, El Kilani, H, Hilgenfeld, R.
登録日2023-01-23
公開日2024-02-07
実験手法X-RAY DIFFRACTION (1.69 Å)
主引用文献Crystal structure of SARS-CoV-2 Mpro_S144A mutant in complex with 13b-K
To Be Published
4X04
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CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM CITROBACTER KOSERI (CKO_04899, TARGET EFI-510094) WITH BOUND D-glucuronate
分子名称: CHLORIDE ION, MAGNESIUM ION, beta-D-glucopyranuronic acid, ...
著者Yadava, U, Vetting, M.W, Al Obaidi, N.F, Toro, R, Morisco, L.L, Benach, J, Wasserman, S.R, Attonito, J.D, Scott Glenn, A, Chamala, S, Chowdhury, S, Lafleur, J, Love, J, Seidel, R.D, Whalen, K.L, Gerlt, J.A, Almo, S.C, Enzyme Function Initiative (EFI)
登録日2014-11-20
公開日2014-12-10
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM CITROBACTER KOSERI (CKO_04899, TARGET EFI-510094) WITH BOUND D-glucuronate
To be published
8C9L
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Crystal structure of SARS-CoV-2 Mpro-S144A mutant, free enzyme
分子名称: 3C-like proteinase nsp5
著者El Kilani, H, Ibrahim, M, Hilgenfeld, R.
登録日2023-01-23
公開日2024-02-07
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Crystal structure of SARS-CoV-2 Mpro-S144A mutant, free enzyme
To Be Published
7SLL
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[U:Ag+:U--pH 9.5] Metal-mediated DNA base pair in tensegrity triangle
分子名称: DNA (5'-D(*GP*AP*GP*CP*AP*GP*CP*CP*TP*GP*TP*UP*TP*GP*GP*AP*CP*AP*TP*CP*A)-3'), DNA (5'-D(P*CP*CP*AP*UP*AP*CP*A)-3'), DNA (5'-D(P*CP*TP*GP*AP*TP*GP*T)-3'), ...
著者Lu, B, Vecchioni, S, Seeman, N.C, Sha, R, Ohayon, Y.P.
登録日2021-10-24
公開日2022-10-26
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (3.73 Å)
主引用文献Heterobimetallic Base Pair Programming in Designer 3D DNA Crystals.
J.Am.Chem.Soc., 145, 2023
7SLN
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[U:Ag+:U--pH 10.5] Metal-mediated DNA base pair in tensegrity triangle
分子名称: DNA (5'-D(*GP*AP*GP*CP*AP*GP*CP*CP*TP*GP*TP*UP*TP*GP*GP*AP*CP*AP*TP*CP*A)-3'), DNA (5'-D(P*CP*CP*AP*UP*AP*CP*A)-3'), DNA (5'-D(P*CP*TP*GP*AP*TP*GP*T)-3'), ...
著者Lu, B, Vecchioni, S, Seeman, N.C, Sha, R, Ohayon, Y.P.
登録日2021-10-24
公開日2022-10-26
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (4.02 Å)
主引用文献Heterobimetallic Base Pair Programming in Designer 3D DNA Crystals.
J.Am.Chem.Soc., 145, 2023
7SA8
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Crystal Structure of the periplasmic lyase AlgL K66A Mutant
分子名称: Alginate lyase
著者Gheorghita, A.A, Pfoh, R, Wong, S.S.Y, Howell, P.L.
登録日2021-09-22
公開日2022-08-03
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献The Pseudomonas aeruginosa homeostasis enzyme AlgL clears the periplasmic space of accumulated alginate during polymer biosynthesis.
J.Biol.Chem., 298, 2022
7SLJ
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BU of 7slj by Molmil
[U:Ag+:U--pH 8.5] Metal-mediated DNA base pair in tensegrity triangle
分子名称: DNA (5'-D(*GP*AP*GP*CP*AP*GP*CP*CP*TP*GP*TP*UP*TP*GP*GP*AP*CP*AP*TP*CP*A)-3'), DNA (5'-D(P*CP*CP*AP*UP*AP*CP*A)-3'), DNA (5'-D(P*CP*TP*GP*AP*TP*GP*T)-3'), ...
著者Lu, B, Vecchioni, S, Seeman, N.C, Sha, R, Ohayon, Y.P.
登録日2021-10-24
公開日2022-10-26
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (4.16 Å)
主引用文献Heterobimetallic Base Pair Programming in Designer 3D DNA Crystals.
J.Am.Chem.Soc., 145, 2023
7SLK
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[U:Ag+:U--pH 9] Metal-mediated DNA base pair in tensegrity triangle
分子名称: DNA (5'-D(*GP*AP*GP*CP*AP*GP*CP*CP*TP*GP*TP*UP*TP*GP*GP*AP*CP*AP*TP*CP*A)-3'), DNA (5'-D(P*CP*CP*AP*UP*AP*CP*A)-3'), DNA (5'-D(P*CP*TP*GP*AP*TP*GP*T)-3'), ...
著者Lu, B, Vecchioni, S, Seeman, N.C, Sha, R, Ohayon, Y.P.
登録日2021-10-24
公開日2022-10-26
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (4.01 Å)
主引用文献Heterobimetallic Base Pair Programming in Designer 3D DNA Crystals.
J.Am.Chem.Soc., 145, 2023
6O8X
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BU of 6o8x by Molmil
Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class02
分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
著者Jogl, G, Khayat, R.
登録日2019-03-12
公開日2020-09-23
最終更新日2024-03-20
実験手法ELECTRON MICROSCOPY (3.68 Å)
主引用文献Cryo-electron microscopy structure of the 70S ribosome from Enterococcus faecalis.
Sci Rep, 10, 2020
4X31
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Room temperature structure of bacteriorhodopsin from lipidic cubic phase obtained with serial millisecond crystallography using synchrotron radiation
分子名称: 1-[2,6,10.14-TETRAMETHYL-HEXADECAN-16-YL]-2-[2,10,14-TRIMETHYLHEXADECAN-16-YL]GLYCEROL, Bacteriorhodopsin, RETINAL
著者Nogly, P, James, D, Wang, D, White, T, Zatsepin, N, Shilova, A, Nelson, G, Liu, H, Johansson, L, Heymann, M, Jaeger, K, Metz, M, Wickstrand, C, Wu, W, Baath, P, Berntsen, P, Oberthuer, D, Panneels, V, Cherezov, V, Chapman, H, Spence, J, Schertler, G, Neutze, R, Moraes, I, Burghammer, M, Standfuss, J, Weierstall, U.
登録日2014-11-27
公開日2015-02-18
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Lipidic cubic phase serial millisecond crystallography using synchrotron radiation.
Iucrj, 2, 2015
4X3M
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Crystal Structure of TTHA0275 from Thermus thermophilus (HB8) in complex with Adenosine in space group P212121
分子名称: ADENOSINE, PHOSPHATE ION, POTASSIUM ION, ...
著者Demirci, H, Belardinelli, R, Jogl, G.
登録日2014-12-01
公開日2015-11-11
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.851 Å)
主引用文献Crystal Structure of TTHA0275 from Thermus thermophilus (HB8)
To Be Published
4X3L
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Crystal Structure of TTHA0275 from Thermus thermophilus (HB8) in complex with 5'-methylthioadenosine in space group P21212
分子名称: 5'-DEOXY-5'-METHYLTHIOADENOSINE, CHLORIDE ION, RNA 2'-O ribose methyltransferase
著者Demirci, H, Belardinelli, R, Jogl, G.
登録日2014-12-01
公開日2016-01-20
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Crystal Structure of TTHA0275 from Thermus thermophilus (HB8)
To Be Published
1EZ3
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BU of 1ez3 by Molmil
CRYSTAL STRUCTURE OF THE NEURONAL T-SNARE SYNTAXIN-1A
分子名称: SYNTAXIN-1A
著者Lerman, J.C, Robblee, J, Fairman, R, Hughson, F.M.
登録日2000-05-09
公開日2000-06-07
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structural analysis of the neuronal SNARE protein syntaxin-1A.
Biochemistry, 39, 2000
4X5N
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Crystal structure of SemiSWEET in the inward-open and outward-open conformations
分子名称: Uncharacterized protein
著者Lee, Y, Nishizawa, T, Yamashita, K, Ishitani, R, Nureki, O.
登録日2014-12-05
公開日2015-01-21
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Structural basis for the facilitative diffusion mechanism by SemiSWEET transporter
Nat Commun, 6, 2015
3M7J
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BU of 3m7j by Molmil
Crystal structure of the bacteriocin LLPA from pseudomonas sp. in complex with Met-mannose
分子名称: Putidacin L1, methyl alpha-D-mannopyranoside
著者Loris, R, Garcia-Pino, A.
登録日2010-03-16
公開日2011-03-23
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.26 Å)
主引用文献Structural Determinants for Activity and Specificity of the Bacterial Toxin LlpA
Plos Pathog., 9, 2013
7PVD
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BU of 7pvd by Molmil
Structure of the membrane soluble spike complex from the Lassa virus in a C1-symmetric map focused on the ectodomain
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Glycoprotein G2, ...
著者Diskin, R, Katz, M.
登録日2021-10-02
公開日2021-12-29
最終更新日2022-03-16
実験手法ELECTRON MICROSCOPY (3.7 Å)
主引用文献Structure and receptor recognition by the Lassa virus spike complex.
Nature, 603, 2022
6I9L
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JmjC domain-containing protein 5 (JMJD5) in complex with Mn and pyridine-2,4-dicarboxylic acid (2,4-PDCA)
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, JmjC domain-containing protein 5, MANGANESE (II) ION, ...
著者Chowdhury, R, Islam, M.S, Schofield, C.J.
登録日2018-11-23
公開日2019-12-04
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.53 Å)
主引用文献Structural analysis of the 2-oxoglutarate binding site of the circadian rhythm linked oxygenase JMJD5.
Sci Rep, 12, 2022
6ODC
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Crystal structure of HDAC8 in complex with compound 30
分子名称: (2E)-3-[2-(3-cyclopentyl-5,5-dimethyl-2-oxoimidazolidin-1-yl)phenyl]-N-hydroxyprop-2-enamide, 1,2-ETHANEDIOL, Histone deacetylase 8, ...
著者Zheng, X, Conti, C, Caravella, J, Zablocki, M.-M, Bair, K, Barczak, N, Han, B, Lancia Jr, D, Liu, C, Martin, M, Ng, P.Y, Rudnitskaya, A, Thomason, J.J, Garcia-Dancey, R, Hardy, C, Lahdenranta, J, Leng, C, Li, P, Pardo, E, Saldahna, A, Tan, T, Toms, A.V, Yao, L, Zhang, C.
登録日2019-03-26
公開日2020-04-01
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Structure-based Discovery of Novel N-(E)-N-Hydroxy-3-(2-(2-oxoimidazolidin-1-yl)phenyl)acrylamides as Potent and Selective HDAC8 inhibitors
To Be Published
7PUY
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BU of 7puy by Molmil
Structure of the membrane soluble spike complex from the Lassa virus in a C3-symmetric map
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Glycoprotein G2, ...
著者Diskin, R, Katz, M.
登録日2021-10-01
公開日2021-12-29
最終更新日2022-03-16
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Structure and receptor recognition by the Lassa virus spike complex.
Nature, 603, 2022
6ODA
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BU of 6oda by Molmil
Crystal structure of HDAC8 in complex with compound 2
分子名称: Histone deacetylase 8, N-{2-[3-(hydroxyamino)-3-oxopropyl]phenyl}-3-(trifluoromethyl)benzamide, POTASSIUM ION, ...
著者Zheng, X, Conti, C, Caravella, J, Zablocki, M.-M, Bair, K, Barczak, N, Han, B, Lancia Jr, D, Liu, C, Martin, M, Ng, P.Y, Rudnitskaya, A, Thomason, J.J, Garcia-Dancey, R, Hardy, C, Lahdenranta, J, Leng, C, Li, P, Pardo, E, Saldahna, A, Tan, T, Toms, A.V, Yao, L, Zhang, C.
登録日2019-03-26
公開日2020-04-01
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.88 Å)
主引用文献Structure-based Discovery of Novel N-(E)-N-Hydroxy-3-(2-(2-oxoimidazolidin-1-yl)phenyl)acrylamides as Potent and Selective HDAC8 inhibitors
To Be Published
7S24
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Crystal structure of the Na+/H+ antiporter NhaA at pH 6.5
分子名称: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, Na(+)/H(+) antiporter NhaA, PENTAETHYLENE GLYCOL
著者Drew, D, Brock, J, Uzdavinys, P, Matsuoka, R.
登録日2021-09-03
公開日2022-08-10
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal structure of the Na + /H + antiporter NhaA at active pH reveals the mechanistic basis for pH sensing.
Nat Commun, 13, 2022
1EWF
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BU of 1ewf by Molmil
THE 1.7 ANGSTROM CRYSTAL STRUCTURE OF BPI
分子名称: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, BACTERICIDAL/PERMEABILITY-INCREASING PROTEIN
著者Kleiger, G, Beamer, L.J, Grothe, R, Mallick, P, Eisenberg, D.
登録日2000-04-25
公開日2000-06-21
最終更新日2021-11-03
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献The 1.7 A crystal structure of BPI: a study of how two dissimilar amino acid sequences can adopt the same fold.
J.Mol.Biol., 299, 2000
6OFR
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The crystal structure of the outer membrane transporter YddB from Escherichia coli
分子名称: GLYCEROL, MAGNESIUM ION, TonB-dependent outer membrane receptor, ...
著者Grinter, R.
登録日2019-04-01
公開日2019-10-02
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Protease-associated import systems are widespread in Gram-negative bacteria.
Plos Genet., 15, 2019

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件を2024-07-17に公開中

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