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PDB: 27399 results

3WNC
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BU of 3wnc by Molmil
Crystal structure of EF-Pyl in complex with GDP
Descriptor: GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Protein translation elongation factor 1A
Authors:Yanagisawa, T, Ishii, R, Fukunaga, R, Sengoku, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2013-12-08
Release date:2014-12-10
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:A SelB/EF-Tu/aIF2 gamma-like protein from Methanosarcina mazei in the GTP-bound form binds cysteinyl-tRNA(Cys.).
J. Struct. Funct. Genomics, 16, 2015
3WS4
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BU of 3ws4 by Molmil
N288Q-N321Q mutant BETA-LACTAMASE DERIVED FROM CHROMOHALOBACTER SP.560 (Condition-2A)
Descriptor: Beta-lactamase, CHLORIDE ION, STRONTIUM ION
Authors:Arai, S, Yonezawa, Y, Okazaki, N, Matsumoto, F, Shimizu, R, Yamada, M, Adachi, M, Tamada, T, Tokunaga, H, Ishibashi, M, Tokunaga, M, Kuroki, R.
Deposit date:2014-02-28
Release date:2015-03-04
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure of a highly acidic beta-lactamase from the moderate halophile Chromohalobacter sp. 560 and the discovery of a Cs(+)-selective binding site
Acta Crystallogr.,Sect.D, 71, 2015
3WPK
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BU of 3wpk by Molmil
SPATIOTEMPORAL DEVELOPMENT of SOAKED PROTEIN CRYSTAL; 750 SEC
Descriptor: Lysozyme C, PLATINUM (IV) ION
Authors:Mizutani, R, Saiga, R.
Deposit date:2014-01-12
Release date:2014-07-30
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:Spatiotemporal development of soaked protein crystal
Sci Rep, 4, 2014
8C76
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BU of 8c76 by Molmil
Light-state 2.5 Angstrom wild-type X-ray crystal structure of the cobalamin binding domain belonging to a light-dependent transcription regulator TtCarH obtained under aerobic conditions from a form 2 crystal illuminated during 5 s
Descriptor: COBALAMIN, Probable transcriptional regulator
Authors:Rios-Santacruz, R, Colletier, J.P, Schiro, G, Weik, M.
Deposit date:2023-01-12
Release date:2023-08-09
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Redox driven B 12 -ligand switch drives CarH photoresponse.
Nat Commun, 14, 2023
3WU8
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BU of 3wu8 by Molmil
Spatiotemporal development of soaked protein crystal; derivative 1080 sec
Descriptor: Lysozyme C, PLATINUM (IV) ION
Authors:Mizutani, R, Saiga, R.
Deposit date:2014-04-23
Release date:2014-07-30
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:Spatiotemporal development of soaked protein crystal
Sci Rep, 4, 2014
8C73
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BU of 8c73 by Molmil
Dark state 1.8 Angstrom crystal structure of cobalamin binding domain belonging to a light-dependent transcription regulator TtCarH obtained under aerobic condition form ll
Descriptor: 5'-DEOXYADENOSINE, COBALAMIN, Probable transcriptional regulator
Authors:Rios-Santacruz, R, Colletier, J.P, Schiro, G, Weik, M.
Deposit date:2023-01-12
Release date:2023-08-09
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Redox driven B 12 -ligand switch drives CarH photoresponse.
Nat Commun, 14, 2023
8CNT
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BU of 8cnt by Molmil
Structure of the DEAH-box helicase Prp16 in complex with ADP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, HEXAETHYLENE GLYCOL, MAGNESIUM ION, ...
Authors:Garbers, T.B, Neumann, P, Ficner, R.
Deposit date:2023-02-24
Release date:2023-08-23
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of Prp16 in complex with ADP.
Acta Crystallogr.,Sect.F, 79, 2023
3TH6
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BU of 3th6 by Molmil
Crystal structure of Triosephosphate isomerase from Rhipicephalus (Boophilus) microplus.
Descriptor: Triosephosphate isomerase
Authors:Arreola, R, Rodriguez-Romero, A, Moraes, J, Gomez-Puyou, A, Perez-Montfort, R, Logullo, C.
Deposit date:2011-08-18
Release date:2011-08-31
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural and biochemical characterization of a recombinant triosephosphate isomerase from Rhipicephalus (Boophilus) microplus.
Insect Biochem.Mol.Biol., 41, 2011
4URR
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BU of 4urr by Molmil
Tailspike protein of Sf6 bacteriophage bound to Shigella flexneri O- antigen octasaccharide fragment
Descriptor: 1,2-ETHANEDIOL, BIFUNCTIONAL TAIL PROTEIN, MANGANESE (II) ION, ...
Authors:Gohlke, U, Heinemann, U, Seckler, R, Barbirz, S.
Deposit date:2014-07-01
Release date:2015-07-15
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Bacteriophage Tailspikes and Bacterial O-Antigens as a Model System to Study Weak-Affinity Protein-Polysaccharide Interactions.
J.Am.Chem.Soc., 138, 2016
3WU7
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BU of 3wu7 by Molmil
Spatiotemporal development of soaked protein crystal; derivative 250 sec
Descriptor: Lysozyme C, PLATINUM (IV) ION
Authors:Mizutani, R, Saiga, R.
Deposit date:2014-04-23
Release date:2014-07-30
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:Spatiotemporal development of soaked protein crystal
Sci Rep, 4, 2014
1QE3
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BU of 1qe3 by Molmil
PNB ESTERASE
Descriptor: PARA-NITROBENZYL ESTERASE, SULFATE ION, ZINC ION
Authors:Spiller, B, Gershenson, A, Arnold, F, Stevens, R.
Deposit date:1999-07-12
Release date:1999-07-21
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:A structural view of evolutionary divergence.
Proc.Natl.Acad.Sci.USA, 96, 1999
8DOK
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BU of 8dok by Molmil
Cryo-EM structure of T/F100 SOSIP.664 HIV-1 Env trimer in complex with 8ANC195 and 10-1074
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Chen, Y, Zhou, F, Huang, R, Tolbert, W, Pazgier, M.
Deposit date:2022-07-13
Release date:2023-07-19
Last modified:2023-11-08
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Structure-function analyses reveal key molecular determinants of HIV-1 CRF01_AE resistance to the entry inhibitor temsavir.
Nat Commun, 14, 2023
3TJI
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BU of 3tji by Molmil
CRYSTAL STRUCTURE OF AN ENOLASE FROM ENTEROBACTER sp. 638 (EFI TARGET EFI-501662) with BOUND MG
Descriptor: CHLORIDE ION, GLYCEROL, MAGNESIUM ION, ...
Authors:Vetting, M.W, Toro, R, Bhosle, R, Wasserman, S.R, Morisco, L.L, Hillerich, B, Washington, E, Scott Glenn, A, Chowdhury, S, Evans, B, Hammonds, J, Zencheck, W.D, Imker, H.J, Gerlt, J.A, Almo, S.C, Enzyme Function Initiative (EFI)
Deposit date:2011-08-24
Release date:2011-09-14
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of an enolase from enterobacter sp. 638 (efi target efi-501662) with boung mg
to be published
3WRT
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BU of 3wrt by Molmil
Wild type beta-lactamase DERIVED FROM CHROMOHALOBACTER SP.560
Descriptor: Beta-lactamase
Authors:Arai, S, Yonezawa, Y, Okazaki, N, Matsumoto, F, Shimizu, R, Yamada, M, Adachi, M, Tamada, T, Tokunaga, H, Ishibashi, M, Tokunaga, M, Kuroki, R.
Deposit date:2014-02-27
Release date:2015-03-04
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structure of a highly acidic beta-lactamase from the moderate halophile Chromohalobacter sp. 560 and the discovery of a Cs(+)-selective binding site
Acta Crystallogr.,Sect.D, 71, 2015
3WPL
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BU of 3wpl by Molmil
SPATIOTEMPORAL DEVELOPMENT of SOAKED PROTEIN CRYSTAL; 2510 SEC
Descriptor: Lysozyme C, PLATINUM (IV) ION
Authors:Mizutani, R, Saiga, R.
Deposit date:2014-01-12
Release date:2014-07-30
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:Spatiotemporal development of soaked protein crystal
Sci Rep, 4, 2014
8C0V
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BU of 8c0v by Molmil
Structure of the peroxisomal Pex1/Pex6 ATPase complex bound to a substrate in single seam state
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
Authors:Ruettermann, M, Koci, M, Lill, P, Geladas, E.D, Kaschani, F, Klink, B.U, Erdmann, R, Gatsogiannis, C.
Deposit date:2022-12-19
Release date:2023-10-04
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:Structure of the peroxisomal Pex1/Pex6 ATPase complex bound to a substrate.
Nat Commun, 14, 2023
5GQU
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BU of 5gqu by Molmil
Crystal structure of branching enzyme from Cyanothece sp. ATCC 51142
Descriptor: 1,4-alpha-glucan branching enzyme GlgB, GLYCEROL, MAGNESIUM ION
Authors:Suzuki, R, Suzuki, E.
Deposit date:2016-08-08
Release date:2017-02-22
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Bound Substrate in the Structure of Cyanobacterial Branching Enzyme Supports a New Mechanistic Model
J. Biol. Chem., 292, 2017
8C0W
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BU of 8c0w by Molmil
Structure of the peroxisomal Pex1/Pex6 ATPase complex bound to a substrate in twin seam state
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
Authors:Ruettermann, M, Koci, M, Lill, P, Geladas, E.D, Kaschani, F, Klink, B.U, Erdmann, R, Gatsogiannis, C.
Deposit date:2022-12-19
Release date:2023-10-04
Method:ELECTRON MICROSCOPY (4.7 Å)
Cite:Structure of the peroxisomal Pex1/Pex6 ATPase complex bound to a substrate.
Nat Commun, 14, 2023
3WUA
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BU of 3wua by Molmil
Spatiotemporal development of soaked protein crystal; derivative 3610 sec
Descriptor: Lysozyme C, PLATINUM (IV) ION
Authors:Mizutani, R, Saiga, R.
Deposit date:2014-04-23
Release date:2014-07-30
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:Spatiotemporal development of soaked protein crystal
Sci Rep, 4, 2014
5GR6
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BU of 5gr6 by Molmil
Crystal structure of branching enzyme Y500A/D501A double mutant from Cyanothece sp. ATCC 51142
Descriptor: 1,4-alpha-glucan branching enzyme GlgB, GLYCEROL, MAGNESIUM ION
Authors:Suzuki, R, Suzuki, E.
Deposit date:2016-08-08
Release date:2017-08-16
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural basis for substrate binding and catalysis of branching enzyme from Cyanothece sp. ATCC 51142
To be published
3WUH
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BU of 3wuh by Molmil
Qri7 and AMP complex
Descriptor: ADENOSINE MONOPHOSPHATE, ZINC ION, tRNA N6-adenosine threonylcarbamoyltransferase, ...
Authors:Tominaga, T, Kobayashi, K, Ishii, R, Ishitani, R, Nureki, O.
Deposit date:2014-04-24
Release date:2014-09-17
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.937 Å)
Cite:Structure of Saccharomyces cerevisiae mitochondrial Qri7 in complex with AMP
ACTA CRYSTALLOGR.,SECT.F, 70, 2014
6PI9
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BU of 6pi9 by Molmil
Crystal structure of 16S rRNA methyltransferase RmtF in complex with S-Adenosyl-L-homocysteine
Descriptor: 16S rRNA (guanine(1405)-N(7))-methyltransferase, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Stogios, P.J, Kim, Y, Evdokimova, E, Di Leo, R, Semper, C, Savchenko, A, Satchell, K.J.F, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2019-06-26
Release date:2019-07-10
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal structure of 16S rRNA methylase RmtF in complex with S-Adenosyl-L-homocysteine
To be Published
3W90
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BU of 3w90 by Molmil
Crystal structure of CMP kinase from Thermus thermophilus HB8
Descriptor: Cytidylate kinase
Authors:Nakagawa, N, Mega, R, Masui, R, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2013-03-22
Release date:2013-09-25
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Crystal structure of CMP kinase: insights into initial substrate recognition and reaction mechanisms
To be Published
6OZB
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BU of 6ozb by Molmil
Crystal structure of the phycoerythrobilin-bound GAF domain from a cyanobacterial phytochrome
Descriptor: PHYCOERYTHROBILIN, Two-component sensor histidine kinase
Authors:Heewhan, S, Xiaoli, Z, Yafang, S, Zhong, R, Wolfgang, G, Kai, H.Z, Xiaojing, Y.
Deposit date:2019-05-15
Release date:2020-05-20
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The interplay between chromophore and protein determines the extended excited state dynamics in a single-domain phytochrome.
Proc.Natl.Acad.Sci.USA, 117, 2020
2YJD
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BU of 2yjd by Molmil
Stapled peptide bound to Estrogen Receptor Beta
Descriptor: 4-(2-PROPAN-2-YLOXYBENZIMIDAZOL-1-YL)PHENOL, ESTROGEN RECEPTOR BETA, STAPLED PEPTIDE
Authors:Phillips, C, Roberts, L.R, Schade, M, Bent, A, Davies, N.L, Moore, R, Pannifer, A.D, Brown, D.G, Pickford, A.R, Irving, S.L.
Deposit date:2011-05-19
Release date:2011-08-03
Last modified:2017-01-25
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:Design and Structure of Stapled Peptides Binding to Estrogen Receptors.
J.Am.Chem.Soc., 133, 2011

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