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PDB: 87 results

8TQM
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BU of 8tqm by Molmil
Cryo-EM structure of E3 ubiquitin ligase Doa10 from Saccharomyces cerevisiae
Descriptor: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, CHOLESTEROL HEMISUCCINATE, ERAD-associated E3 ubiquitin-protein ligase DOA10, ...
Authors:Park, E, Itskanov, S.I.
Deposit date:2023-08-07
Release date:2024-03-13
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Substrate recognition mechanism of the endoplasmic reticulum-associated ubiquitin ligase Doa10.
Nat Commun, 15, 2024
4R3R
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BU of 4r3r by Molmil
Crystal structures of EGFR in complex with Mig6
Descriptor: Epidermal growth factor receptor, peptide from ERBB receptor feedback inhibitor 1'
Authors:Park, E, Kim, N, Yi, Z, Cho, A, Kim, K, Ficarro, S.B, Park, A, Park, W.Y, Murray, B, Meyerson, M, Beroukim, R, Marto, J.A, Cho, J, Eck, M.J.
Deposit date:2014-08-17
Release date:2015-08-12
Last modified:2015-09-16
Method:X-RAY DIFFRACTION (3.25 Å)
Cite:Structure and mechanism of activity-based inhibition of the EGF receptor by Mig6.
Nat.Struct.Mol.Biol., 22, 2015
4R3P
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BU of 4r3p by Molmil
Crystal structures of EGFR in complex with Mig6
Descriptor: Epidermal growth factor receptor, peptide from ERBB receptor feedback inhibitor 1
Authors:Park, E, Kim, N, Yi, Z, Cho, A, Kim, K, Ficarro, S.B, Park, A, Park, W.Y, Murray, B, Meyerson, M, Beroukim, R, Marto, J.A, Cho, J, Eck, M.J.
Deposit date:2014-08-17
Release date:2015-08-12
Last modified:2015-09-16
Method:X-RAY DIFFRACTION (2.905 Å)
Cite:Structure and mechanism of activity-based inhibition of the EGF receptor by Mig6.
Nat.Struct.Mol.Biol., 22, 2015
6XMT
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BU of 6xmt by Molmil
Structure of P5A-ATPase Spf1, BeF3-bound form
Descriptor: BERYLLIUM TRIFLUORIDE ION, MAGNESIUM ION, P5A-type ATPase
Authors:Park, E, Sim, S.I.
Deposit date:2020-06-30
Release date:2020-09-23
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:The endoplasmic reticulum P5A-ATPase is a transmembrane helix dislocase.
Science, 369, 2020
6XMQ
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BU of 6xmq by Molmil
Structure of P5A-ATPase Spf1, AMP-PCP-bound form
Descriptor: MAGNESIUM ION, P5A-type ATPase, PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER
Authors:Park, E, Sim, S.I.
Deposit date:2020-06-30
Release date:2020-09-23
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:The endoplasmic reticulum P5A-ATPase is a transmembrane helix dislocase.
Science, 369, 2020
6XMU
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BU of 6xmu by Molmil
Structure of P5A-ATPase Spf1, endogenous substrate-bound
Descriptor: BERYLLIUM TRIFLUORIDE ION, MAGNESIUM ION, P5A-type ATPase, ...
Authors:Park, E, Sim, S.I.
Deposit date:2020-06-30
Release date:2020-09-23
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:The endoplasmic reticulum P5A-ATPase is a transmembrane helix dislocase.
Science, 369, 2020
6XMS
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BU of 6xms by Molmil
Structure of P5A-ATPase Spf1, AlF4-bound form
Descriptor: MAGNESIUM ION, P5A-type ATPase, TETRAFLUOROALUMINATE ION
Authors:Park, E, Sim, S.I.
Deposit date:2020-06-30
Release date:2020-09-23
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:The endoplasmic reticulum P5A-ATPase is a transmembrane helix dislocase.
Science, 369, 2020
8DO3
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BU of 8do3 by Molmil
Cryo-EM structure of the human Sec61 complex inhibited by eeyarestatin I
Descriptor: N'-(4-chlorophenyl)-N-[(4R)-3-(4-chlorophenyl)-5,5-dimethyl-1-(2-{(2E)-2-[(2E)-3-(5-nitrofuran-2-yl)prop-2-en-1-ylidene]hydrazinyl}-2-oxoethyl)-2-oxoimidazolidin-4-yl]-N-hydroxyurea, Protein transport protein Sec61 subunit alpha isoform 1, Protein transport protein Sec61 subunit beta, ...
Authors:Park, E, Itskanov, S.
Deposit date:2022-07-12
Release date:2023-05-24
Last modified:2023-09-06
Method:ELECTRON MICROSCOPY (3.22 Å)
Cite:A common mechanism of Sec61 translocon inhibition by small molecules.
Nat.Chem.Biol., 19, 2023
8DNW
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Cryo-EM structure of the human Sec61 complex in a partially-open apo state (Class 2)
Descriptor: Protein transport protein Sec61 subunit alpha isoform 1, Protein transport protein Sec61 subunit beta, Protein transport protein Sec61 subunit gamma
Authors:Park, E, Itskanov, S.
Deposit date:2022-07-12
Release date:2023-05-24
Last modified:2023-09-06
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:A common mechanism of Sec61 translocon inhibition by small molecules.
Nat.Chem.Biol., 19, 2023
8DNY
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BU of 8dny by Molmil
Cryo-EM structure of the human Sec61 complex inhibited by decatransin
Descriptor: Decatransin peptide inhibitor, Protein transport protein Sec61 subunit alpha isoform 1, Protein transport protein Sec61 subunit beta, ...
Authors:Park, E, Itskanov, S.
Deposit date:2022-07-12
Release date:2023-05-24
Last modified:2023-11-15
Method:ELECTRON MICROSCOPY (2.85 Å)
Cite:A common mechanism of Sec61 translocon inhibition by small molecules.
Nat.Chem.Biol., 19, 2023
8DNX
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BU of 8dnx by Molmil
Cryo-EM structure of the human Sec61 complex inhibited by cotransin
Descriptor: Cotransin analogue peptide inhibitor, Protein transport protein Sec61 subunit alpha isoform 1, Protein transport protein Sec61 subunit beta, ...
Authors:Park, E, Itskanov, S.
Deposit date:2022-07-12
Release date:2023-05-24
Last modified:2023-11-15
Method:ELECTRON MICROSCOPY (2.98 Å)
Cite:A common mechanism of Sec61 translocon inhibition by small molecules.
Nat.Chem.Biol., 19, 2023
8DO2
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BU of 8do2 by Molmil
Cryo-EM structure of the human Sec61 complex inhibited by cyclotriazadisulfonamide (CADA)
Descriptor: 9-benzyl-1,5-bis(4-methylbenzene-1-sulfonyl)-3-methylidene-1,5,9-triazacyclododecane, Protein transport protein Sec61 subunit alpha isoform 1, Protein transport protein Sec61 subunit beta, ...
Authors:Park, E, Itskanov, S.
Deposit date:2022-07-12
Release date:2023-05-24
Last modified:2023-09-06
Method:ELECTRON MICROSCOPY (2.95 Å)
Cite:A common mechanism of Sec61 translocon inhibition by small molecules.
Nat.Chem.Biol., 19, 2023
8DNV
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BU of 8dnv by Molmil
Cryo-EM structure of the human Sec61 complex in a partially-open apo state (Class 1)
Descriptor: Protein transport protein Sec61 subunit alpha isoform 1, Protein transport protein Sec61 subunit beta, Protein transport protein Sec61 subunit gamma
Authors:Park, E, Itskanov, S.
Deposit date:2022-07-12
Release date:2023-05-24
Last modified:2023-09-06
Method:ELECTRON MICROSCOPY (3.03 Å)
Cite:A common mechanism of Sec61 translocon inhibition by small molecules.
Nat.Chem.Biol., 19, 2023
8DO0
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BU of 8do0 by Molmil
Cryo-EM structure of the human Sec61 complex inhibited by mycolactone
Descriptor: Protein transport protein Sec61 subunit alpha isoform 1, Protein transport protein Sec61 subunit beta, Protein transport protein Sec61 subunit gamma, ...
Authors:Park, E, Itskanov, S.
Deposit date:2022-07-12
Release date:2023-05-24
Last modified:2023-09-06
Method:ELECTRON MICROSCOPY (2.86 Å)
Cite:A common mechanism of Sec61 translocon inhibition by small molecules.
Nat.Chem.Biol., 19, 2023
8DO1
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BU of 8do1 by Molmil
Cryo-EM structure of the human Sec61 complex inhibited by ipomoeassin F
Descriptor: Protein transport protein Sec61 subunit alpha isoform 1, Protein transport protein Sec61 subunit beta, Protein transport protein Sec61 subunit gamma, ...
Authors:Park, E, Itskanov, S.
Deposit date:2022-07-12
Release date:2023-05-24
Last modified:2023-09-06
Method:ELECTRON MICROSCOPY (3.01 Å)
Cite:A common mechanism of Sec61 translocon inhibition by small molecules.
Nat.Chem.Biol., 19, 2023
8DNZ
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BU of 8dnz by Molmil
Cryo-EM structure of the human Sec61 complex inhibited by apratoxin F
Descriptor: Apratoxin F peptide inhibitor, Protein transport protein Sec61 subunit alpha isoform 1, Protein transport protein Sec61 subunit beta, ...
Authors:Park, E, Itskanov, S.
Deposit date:2022-07-12
Release date:2023-05-24
Last modified:2023-11-15
Method:ELECTRON MICROSCOPY (2.57 Å)
Cite:A common mechanism of Sec61 translocon inhibition by small molecules.
Nat.Chem.Biol., 19, 2023
8QPP
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BU of 8qpp by Molmil
Bacillus subtilis MutS2-collided disome complex (stalled 70S)
Descriptor: 16S rRNA (1533-MER), 23S ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Park, E, Mackens-Kiani, T, Berhane, R, Esser, H, Erdenebat, C, Burroughs, A.M, Berninghausen, O, Aravind, L, Beckmann, R, Green, R, Buskirk, A.R.
Deposit date:2023-10-02
Release date:2023-12-27
Last modified:2024-02-28
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:B. subtilis MutS2 splits stalled ribosomes into subunits without mRNA cleavage.
Embo J., 43, 2024
8R55
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BU of 8r55 by Molmil
Bacillus subtilis MutS2-collided disome complex (collided 70S)
Descriptor: 16S rRNA (1533-MER), 23S RNA (2887-MER), 30S ribosomal protein S10, ...
Authors:Park, E, Mackens-Kiani, T, Berhane, R, Esser, H, Erdenebat, C, Burroughs, A.M, Berninghausen, O, Aravind, L, Beckmann, R, Green, R, Buskirk, A.R.
Deposit date:2023-11-16
Release date:2024-01-17
Last modified:2024-02-28
Method:ELECTRON MICROSCOPY (3.57 Å)
Cite:B. subtilis MutS2 splits stalled ribosomes into subunits without mRNA cleavage.
Embo J., 43, 2024
6COY
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BU of 6coy by Molmil
Human CLC-1 chloride ion channel, transmembrane domain
Descriptor: CHLORIDE ION, Chloride channel protein 1
Authors:Park, E, MacKinnon, R.
Deposit date:2018-03-13
Release date:2018-06-13
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (3.36 Å)
Cite:Structure of the CLC-1 chloride channel fromHomo sapiens.
Elife, 7, 2018
6COZ
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BU of 6coz by Molmil
Human CLC-1 chloride ion channel, C-terminal cytosolic domain
Descriptor: Chloride channel protein 1
Authors:Park, E, MacKinnon, R.
Deposit date:2018-03-13
Release date:2018-06-13
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (3.36 Å)
Cite:Structure of the CLC-1 chloride channel fromHomo sapiens.
Elife, 7, 2018
6D8E
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BU of 6d8e by Molmil
Discovery of a Highly Potent and Broadly Effective EGFR and HER2 Exon 20 Insertion Mutant Inhibitor
Descriptor: (4-fluorophenyl)methyl {2-[(1-methyl-1H-pyrazol-3-yl)amino]pyrimidin-4-yl}[3-(propanoylamino)phenyl]carbamate, Epidermal growth factor receptor
Authors:Park, E, Eck, M.J.
Deposit date:2018-04-26
Release date:2018-07-18
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.537 Å)
Cite:Discovery of a Highly Potent and Broadly Effective Epidermal Growth Factor Receptor and HER2 Exon 20 Insertion Mutant Inhibitor.
Angew. Chem. Int. Ed. Engl., 57, 2018
6DUK
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BU of 6duk by Molmil
EGFR with an allosteric inhibitor
Descriptor: (2R)-2-(5-fluoro-2-hydroxyphenyl)-2-{1-oxo-6-[4-(piperazin-1-yl)phenyl]-1,3-dihydro-2H-isoindol-2-yl}-N-(1,3-thiazol-2-yl)acetamide, Epidermal growth factor receptor, MAGNESIUM ION, ...
Authors:Park, E, Eck, M.J.
Deposit date:2018-06-21
Release date:2019-06-05
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Single and Dual Targeting of Mutant EGFR with an Allosteric Inhibitor.
Cancer Discov, 9, 2019
6UCU
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BU of 6ucu by Molmil
Cryo-EM structure of the mitochondrial TOM complex from yeast (dimer)
Descriptor: DODECYL-BETA-D-MALTOSIDE, Mitochondrial import receptor subunit TOM22, Mitochondrial import receptor subunit TOM40, ...
Authors:Park, E, Tucker, K.
Deposit date:2019-09-17
Release date:2019-11-06
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (3.06 Å)
Cite:Cryo-EM structure of the mitochondrial protein-import channel TOM complex at near-atomic resolution.
Nat.Struct.Mol.Biol., 26, 2019
6UCV
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BU of 6ucv by Molmil
Cryo-EM structure of the mitochondrial TOM complex from yeast (tetramer)
Descriptor: 1,2-DIMYRISTOYL-RAC-GLYCERO-3-PHOSPHOCHOLINE, Mitochondrial import receptor subunit TOM22, Mitochondrial import receptor subunit TOM40, ...
Authors:Park, E, Tucker, K.
Deposit date:2019-09-17
Release date:2019-11-06
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:Cryo-EM structure of the mitochondrial protein-import channel TOM complex at near-atomic resolution.
Nat.Struct.Mol.Biol., 26, 2019
6XMP
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BU of 6xmp by Molmil
Structure of P5A-ATPase Spf1, Apo form
Descriptor: DODECYL-BETA-D-MALTOSIDE, P5A-type ATPase
Authors:Park, E, Sim, S.I.
Deposit date:2020-06-30
Release date:2020-09-23
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:The endoplasmic reticulum P5A-ATPase is a transmembrane helix dislocase.
Science, 369, 2020

 

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