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PDB: 148 件
4N7Z
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Crystal structure of human Plk4 cryptic polo box (CPB) in complex with a Cep192 N-terminal fragment
分子名称: Centrosomal protein of 192 kDa, Serine/threonine-protein kinase PLK4
著者Park, S.-Y, Park, J.-E, Tian, L, Kim, T.-S, Yang, W, Lee, K.S.
登録日2013-10-16
公開日2014-07-02
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.85 Å)
主引用文献Molecular basis for unidirectional scaffold switching of human Plk4 in centriole biogenesis.
Nat.Struct.Mol.Biol., 21, 2014
2ROM
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CRYSTAL STRUCTURE OF NITRIC REDUCTASE FROM DENITRIFYING FUNGUS FUSARIUM OXYSPORUM COMPLEX WITH CARBON MONOXIDE
分子名称: CARBON MONOXIDE, CYTOCHROME P450, PROTOPORPHYRIN IX CONTAINING FE
著者Park, S.-Y, Nakagawa, A.
登録日1997-03-24
公開日1997-10-15
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structure of nitric oxide reductase from denitrifying fungus Fusarium oxysporum.
Nat.Struct.Biol., 4, 1997
8EY0
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Structure of an orthogonal PYR1*:HAB1* chemical-induced dimerization module in complex with mandipropamid
分子名称: (2S)-2-(4-chlorophenyl)-N-{2-[3-methoxy-4-(prop-2-yn-1-yloxy)phenyl]ethyl}-2-(prop-2-yn-1-yloxy)ethanamide, Abscisic acid receptor PYR1, GLYCEROL, ...
著者Park, S.-Y, Volkman, B.F, Cutler, S.R, Peterson, F.C.
登録日2022-10-26
公開日2023-11-08
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献An orthogonalized PYR1-based CID module with reprogrammable ligand-binding specificity.
Nat.Chem.Biol., 20, 2024
4N7V
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Crystal structure of human Plk4 cryptic polo box (CPB) in complex with a Cep152 N-terminal fragment
分子名称: Centrosomal protein of 152 kDa, Serine/threonine-protein kinase PLK4
著者Park, S.-Y, Park, J.-E, Tian, L, Kim, T.-S, Yang, W, Lee, K.S.
登録日2013-10-16
公開日2014-07-02
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.758 Å)
主引用文献Molecular basis for unidirectional scaffold switching of human Plk4 in centriole biogenesis.
Nat.Struct.Mol.Biol., 21, 2014
1CMJ
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CRYSTAL STRUCTURES OF FERRIC-NO COMPLEXES OF FUNGAL NITRIC OXIDE REDUCTASE AND THEIR SER286 MUTANTS AT CRYOGENIC TEMPERATURE
分子名称: CYTOCHROME P450, NITRIC OXIDE, PROTOPORPHYRIN IX CONTAINING FE
著者Park, S.-Y, Shiro, Y.
登録日1999-05-07
公開日2000-03-22
最終更新日2023-08-09
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Proton delivery in NO reduction by fungal nitric-oxide reductase. Cryogenic crystallography, spectroscopy, and kinetics of ferric-NO complexes of wild-type and mutant enzymes.
J.Biol.Chem., 275, 2000
1CL6
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CRYSTAL STRUCTURES OF FERRIC-NO COMPLEXES OF FUNGAL NITRIC OXIDE REDUCTASE AND ITS SER286 MUTANTS AT CRYOGENIC TEMPERATURE
分子名称: CYTOCHROME P450, NITRIC OXIDE, PROTOPORPHYRIN IX CONTAINING FE
著者Park, S.-Y, Shiro, Y.
登録日1999-05-06
公開日2000-03-22
最終更新日2023-08-09
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Proton delivery in NO reduction by fungal nitric-oxide reductase. Cryogenic crystallography, spectroscopy, and kinetics of ferric-NO complexes of wild-type and mutant enzymes.
J.Biol.Chem., 275, 2000
1CMN
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CRYSTAL STRUCTURES OF FERRIC-NO COMPLEXES OF FUNGAL NITRIC OXIDE REDUCTASE AND THEIR SER286 MUTANTS AT CRYOGENIC TEMPERATURE
分子名称: CYTOCHROME P450, NITRIC OXIDE, PROTOPORPHYRIN IX CONTAINING FE
著者Park, S.-Y, Shiro, Y.
登録日1999-05-07
公開日2000-03-22
最終更新日2023-08-09
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Proton delivery in NO reduction by fungal nitric-oxide reductase. Cryogenic crystallography, spectroscopy, and kinetics of ferric-NO complexes of wild-type and mutant enzymes.
J.Biol.Chem., 275, 2000
4YUT
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Crystal structure of photoactivated adenylyl cyclase of a cyanobacteriaOscillatoria acuminata in orthorhombic form
分子名称: FLAVIN MONONUCLEOTIDE, Family 3 adenylate cyclase
著者Park, S.-Y, Ohki, M, Sugiyama, K, Kawai, F, Iseki, M.
登録日2015-03-19
公開日2016-06-01
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Structural insight into photoactivation of an adenylate cyclase from a photosynthetic cyanobacterium
Proc.Natl.Acad.Sci.USA, 113, 2016
4YUS
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Crystal structure of photoactivated adenylyl cyclase of a cyanobacteriaOscillatoria acuminata in hexagonal form
分子名称: FLAVIN MONONUCLEOTIDE, Family 3 adenylate cyclase
著者Park, S.-Y, Ohki, M, Sugiyama, K, Kawai, F, Iseki, M.
登録日2015-03-19
公開日2016-06-01
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structural insight into photoactivation of an adenylate cyclase from a photosynthetic cyanobacterium
Proc.Natl.Acad.Sci.USA, 113, 2016
1ROM
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BU of 1rom by Molmil
CRYSTAL STRUCTURE OF NITRIC REDUCTASE FROM DENITRIFYING FUNGUS FUSARIUM OXYSPORUM
分子名称: CYTOCHROME P450, PROTOPORPHYRIN IX CONTAINING FE
著者Park, S.-Y, Nakagawa, A.
登録日1997-03-24
公開日1997-10-15
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structure of nitric oxide reductase from denitrifying fungus Fusarium oxysporum.
Nat.Struct.Biol., 4, 1997
3WX7
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Crystal structure of COD
分子名称: ACETATE ION, CALCIUM ION, Chitin oligosaccharide deacetylase, ...
著者Park, S.-Y, Sugiyama, K, Hirano, T, Nishio, T.
登録日2014-07-18
公開日2014-12-03
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (1.349 Å)
主引用文献Structure-based analysis of domain function of chitin oligosaccharide deacetylase from Vibrio parahaemolyticus.
FEBS Lett., 589, 2015
2DN1
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1.25A resolution crystal structure of human hemoglobin in the oxy form
分子名称: Hemoglobin alpha subunit, Hemoglobin beta subunit, OXYGEN MOLECULE, ...
著者Park, S.-Y, Yokoyama, T, Shibayama, N, Shiro, Y, Tame, J.R.
登録日2006-04-25
公開日2006-05-09
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.25 Å)
主引用文献1.25 a resolution crystal structures of human haemoglobin in the oxy, deoxy and carbonmonoxy forms.
J.Mol.Biol., 360, 2006
2DN3
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1.25A resolution crystal structure of human hemoglobin in the carbonmonoxy form
分子名称: CARBON MONOXIDE, Hemoglobin alpha subunit, Hemoglobin beta subunit, ...
著者Park, S.-Y, Yokoyama, T, Shibayama, N, Shiro, Y, Tame, J.R.
登録日2006-04-25
公開日2006-05-09
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.25 Å)
主引用文献1.25 a resolution crystal structures of human haemoglobin in the oxy, deoxy and carbonmonoxy forms.
J.Mol.Biol., 360, 2006
2DN2
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1.25A resolution crystal structure of human hemoglobin in the deoxy form
分子名称: Hemoglobin alpha subunit, Hemoglobin beta subunit, PROTOPORPHYRIN IX CONTAINING FE
著者Park, S.-Y, Yokoyama, T, Shibayama, N, Shiro, Y, Tame, J.R.
登録日2006-04-25
公開日2006-05-09
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.25 Å)
主引用文献1.25 a resolution crystal structures of human haemoglobin in the oxy, deoxy and carbonmonoxy forms.
J.Mol.Biol., 360, 2006
2E47
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Crystal Structure Analysis of the clock protein EA4 (glycosylation form)
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, COPPER (II) ION, Time interval measuring enzyme TIME, ...
著者Park, S.-Y, Hiraki, T.
登録日2006-12-05
公開日2007-12-11
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.11 Å)
主引用文献the clock protein EA4 ticks away with movement of a mobile copper ion
To be Published
2E46
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Crystal Structure Analysis of the clock protein EA4
分子名称: COPPER (II) ION, Time interval measuring enzyme TIME, ZINC ION
著者Park, S.-Y, Hiraki, T.
登録日2006-12-05
公開日2008-02-05
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献the clock protein EA4 ticks away with movement of a mobile copper ion
To be Published
1IO9
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THERMOPHILIC CYTOCHROME P450 (CYP119) FROM SULFOLOBUS SOLFATARICUS: HIGH RESOLUTION STRUCTURAL ORIGIN OF ITS THERMOSTABILITY AND FUNCTIONAL PROPERTIES
分子名称: CYTOCHROME P450 CYP119, PROTOPORPHYRIN IX CONTAINING FE
著者Park, S.-Y, Yamane, K, Adachi, S, Shiro, Y, Sligar, S.G, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2001-02-08
公開日2001-03-07
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Thermophilic cytochrome P450 (CYP119) from Sulfolobus solfataricus: high resolution structure and functional properties.
J.Inorg.Biochem., 91, 2002
1IO8
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Thermophilic cytochrome P450 (CYP119) from sulfolobus solfataricus: High resolution structural origin of its thermostability and functional properties
分子名称: CYTOCHROME P450 CYP119, PROTOPORPHYRIN IX CONTAINING FE
著者Park, S.-Y, Yamane, K, Adachi, S, Shiro, Y, Sligar, S.G, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2001-02-08
公開日2001-03-07
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Thermophilic cytochrome P450 (CYP119) from Sulfolobus solfataricus: high resolution structure and functional properties
J.Inorg.Biochem., 91, 2002
1IO7
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THERMOPHILIC CYTOCHROME P450 (CYP119) FROM SULFOLOBUS SOLFATARICUS: HIGH RESOLUTION STRUCTURAL ORIGIN OF ITS THERMOSTABILITY AND FUNCTIONAL PROPERTIES
分子名称: CYTOCHROME P450 CYP119, PROTOPORPHYRIN IX CONTAINING FE
著者Park, S.-Y, Yamane, K, Adachi, S, Shiro, Y, Sligar, S.G, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2001-02-08
公開日2001-02-28
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Thermophilic cytochrome P450 (CYP119) from Sulfolobus solfataricus: high resolution structure and functional properties.
J.Inorg.Biochem., 91, 2002
1UIW
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Crystal Structures of Unliganded and Half-Liganded Human Hemoglobin Derivatives Cross-Linked between Lys 82beta1 and Lys 82beta2
分子名称: BUT-2-ENEDIAL, Hemoglobin alpha chain, Hemoglobin beta chain, ...
著者Park, S.-Y, Shibayama, N, Tame, J.R.H.
登録日2003-07-23
公開日2003-08-12
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Crystal structures of unliganded and half-liganded human hemoglobin derivatives cross-linked between Lys 82beta1 and Lys 82beta2
Biochemistry, 43, 2004
5Y6C
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Crystal structure of ZmASCH S128A mutant protein from Zymomonas mobilis
分子名称: CHLORIDE ION, Helix-turn-helix domain-containing protein
著者Park, S.-Y, Kim, J.-S.
登録日2017-08-11
公開日2018-07-18
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.398 Å)
主引用文献Crystal structure of an ASCH protein from Zymomonas mobilis and its ribonuclease activity specific for single-stranded RNA.
Sci Rep, 7, 2017
5Y6B
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Crystal structure of ZmASCH Y47F mutant protein from Zymomonas mobilis
分子名称: Helix-turn-helix domain-containing protein
著者Park, S.-Y, Kim, J.-S.
登録日2017-08-11
公開日2018-07-18
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structure of an ASCH protein from Zymomonas mobilis and its ribonuclease activity specific for single-stranded RNA.
Sci Rep, 7, 2017
1IRD
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Crystal Structure of Human Carbonmonoxy-Haemoglobin at 1.25 A Resolution
分子名称: CARBON MONOXIDE, Hemoglobin alpha chain, Hemoglobin beta chain, ...
著者Park, S.-Y, Tame, J.R.H.
登録日2001-09-27
公開日2001-10-17
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.25 Å)
主引用文献Carbonmonoxy-Haemoglobin at 1.25 A Resolution
To be Published
1QSI
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MAGNESIUM(II)-AND ZINC(II)-PROTOPORPHYRIN IX'S STABILIZE THE LOWEST OXYGEN AFFINITY STATE OF HUMAN HEMOGLOBIN EVEN MORE STRONGLY THAN DEOXYHEME
分子名称: CARBON MONOXIDE, PROTEIN (HEMOGLOBIN ALPHA CHAIN), PROTEIN (HEMOGLOBIN BETA CHAIN), ...
著者Miyazaki, G, Morimoto, H, Yun, K.-M, Park, S.-Y, Nakagawa, A, Minagawa, H, Shibayama, N.
登録日1999-06-22
公開日1999-07-02
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Magnesium(II) and zinc(II)-protoporphyrin IX's stabilize the lowest oxygen affinity state of human hemoglobin even more strongly than deoxyheme.
J.Mol.Biol., 292, 1999
6LF2
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SeviL bound to asialo-GM1 saccharide
分子名称: SeviL, beta-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-galactopyranose-(1-4)-beta-D-galactopyranose-(1-4)-beta-D-glucopyranose
著者Kamata, K, Ozeki, Y, Park, S.-Y, Tame, J.R.H.
登録日2019-11-28
公開日2020-12-02
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献The structure of SeviL, a GM1b/asialo-GM1 binding R-type lectin from the mussel Mytilisepta virgata.
Sci Rep, 10, 2020

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