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PDB: 497 件

5ZOP
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Crystal structure of histone deacetylase 4 (HDAC4) in complex with a SMRT corepressor SP2 fragment
分子名称: Histone deacetylase 4, POTASSIUM ION, SMRT corepressor SP2 fragment, ...
著者Park, S.Y, Hwang, H.J, Kim, J.S.
登録日2018-04-13
公開日2018-10-10
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.698 Å)
主引用文献Structural basis of the specific interaction of SMRT corepressor with histone deacetylase 4.
Nucleic Acids Res., 46, 2018
5Y7D
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BU of 5y7d by Molmil
Crystal structure of human Endothelial-overexpressed LPS associated factor 1
分子名称: CHLORIDE ION, GLYCEROL, Protein CXorf40A, ...
著者Park, S.H, Kim, M.J, Park, J.S, Kim, H.J, Han, B.W.
登録日2017-08-17
公開日2018-08-22
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (1.71 Å)
主引用文献Crystal Structure of Human EOLA1 Implies Its Possibility of RNA Binding.
Molecules, 24, 2019
6PWX
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BU of 6pwx by Molmil
Cryo-EM structure of RbBP5 bound to the nucleosome
分子名称: DNA (146-MER), Histone H2A type 1, Histone H2B 1.1, ...
著者Park, S.H, Ayoub, A, Lee, Y.T, Xu, J, Zhang, W, Zhang, B, Zhang, Y, Cianfrocco, M.A, Su, M, Dou, Y, Cho, U.
登録日2019-07-23
公開日2019-12-18
最終更新日2024-03-20
実験手法ELECTRON MICROSCOPY (4.2 Å)
主引用文献Cryo-EM structure of the human MLL1 core complex bound to the nucleosome.
Nat Commun, 10, 2019
7XYZ
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BU of 7xyz by Molmil
TRIM E3 ubiquitin ligase
分子名称: Tripartite motif-containing protein 72, ZINC ION
著者Park, S.H, Song, H.K.
登録日2022-06-02
公開日2023-07-12
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (4.62 Å)
主引用文献Structure and activation of the RING E3 ubiquitin ligase TRIM72 on the membrane.
Nat.Struct.Mol.Biol., 30, 2023
7XV2
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BU of 7xv2 by Molmil
TRIM E3 ubiquitin ligase
分子名称: Tripartite motif-containing protein 72, ZINC ION
著者Park, S.H, Song, H.K.
登録日2022-05-20
公開日2023-05-24
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.75 Å)
主引用文献Structure and activation of the RING E3 ubiquitin ligase TRIM72 on the membrane.
Nat.Struct.Mol.Biol., 30, 2023
7XZ1
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BU of 7xz1 by Molmil
TRIM E3 ubiquitin ligase
分子名称: Tripartite motif-containing protein 72, ZINC ION
著者Park, S.H, Song, H.K.
登録日2022-06-02
公開日2023-07-12
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (5.2 Å)
主引用文献Structure and activation of the RING E3 ubiquitin ligase TRIM72 on the membrane.
Nat.Struct.Mol.Biol., 30, 2023
7XZ0
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BU of 7xz0 by Molmil
TRIM E3 ubiquitin ligase
分子名称: Tripartite motif-containing protein 72, ZINC ION
著者Park, S.H, Song, H.K.
登録日2022-06-02
公開日2023-07-12
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (3.28 Å)
主引用文献Structure and activation of the RING E3 ubiquitin ligase TRIM72 on the membrane.
Nat.Struct.Mol.Biol., 30, 2023
7XZ2
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BU of 7xz2 by Molmil
TRIM E3 ubiquitin ligase
分子名称: Tripartite motif-containing protein 72, ZINC ION
著者Park, S.H, Song, H.K.
登録日2022-06-02
公開日2023-07-12
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (3.5 Å)
主引用文献Structure and activation of the RING E3 ubiquitin ligase TRIM72 on the membrane.
Nat.Struct.Mol.Biol., 30, 2023
7XYY
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TRIM E3 ubiquitin ligase WT
分子名称: Tripartite motif-containing protein 72, ZINC ION
著者Park, S.H, Song, H.K.
登録日2022-06-02
公開日2023-07-12
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (7.1 Å)
主引用文献Structure and activation of the RING E3 ubiquitin ligase TRIM72 on the membrane.
Nat.Struct.Mol.Biol., 30, 2023
4NJD
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BU of 4njd by Molmil
Structure of p21-activated kinase 4 with a novel inhibitor KY-04031
分子名称: N-(1H-indazol-5-yl)-N'-[2-(1H-indol-3-yl)ethyl]-6-methoxy-1,3,5-triazine-2,4-diamine, Serine/threonine-protein kinase PAK 4
著者Park, S.
登録日2013-11-09
公開日2014-05-21
最終更新日2022-08-24
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Discovery and the structural basis of a novel p21-activated kinase 4 inhibitor.
Cancer Lett., 349, 2014
6W5N
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BU of 6w5n by Molmil
Cryo-EM structure of MLL1 in complex with RbBP5, WDR5, SET1, and ASH2L bound to the nucleosome (Class05)
分子名称: DNA (147-MER), Histone H2A type 1, Histone H2B 1.1, ...
著者Park, S.H, Lee, Y.T, Ayoub, A, Dou, Y, Cho, U.
登録日2020-03-13
公開日2021-03-31
最終更新日2024-05-29
実験手法ELECTRON MICROSCOPY (6 Å)
主引用文献Mechanism for DPY30 and ASH2L intrinsically disordered regions to modulate the MLL/SET1 activity on chromatin.
Nat Commun, 12, 2021
4YUT
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Crystal structure of photoactivated adenylyl cyclase of a cyanobacteriaOscillatoria acuminata in orthorhombic form
分子名称: FLAVIN MONONUCLEOTIDE, Family 3 adenylate cyclase
著者Park, S.-Y, Ohki, M, Sugiyama, K, Kawai, F, Iseki, M.
登録日2015-03-19
公開日2016-06-01
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Structural insight into photoactivation of an adenylate cyclase from a photosynthetic cyanobacterium
Proc.Natl.Acad.Sci.USA, 113, 2016
6W5I
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BU of 6w5i by Molmil
Cryo-EM structure of MLL1 in complex with RbBP5, WDR5, SET1, and ASH2L bound to the nucleosome (Class01)
分子名称: DNA (147-MER), Histone H2A, Histone H2B 1.1, ...
著者Park, S.H, Lee, Y.T, Ayoub, A, Dou, Y, Cho, U.
登録日2020-03-13
公開日2021-03-31
最終更新日2024-05-29
実験手法ELECTRON MICROSCOPY (6.9 Å)
主引用文献Mechanism for DPY30 and ASH2L intrinsically disordered regions to modulate the MLL/SET1 activity on chromatin.
Nat Commun, 12, 2021
6W5M
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BU of 6w5m by Molmil
Cryo-EM structure of MLL1 in complex with RbBP5, WDR5, SET1, and ASH2L bound to the nucleosome (Class02)
分子名称: DNA (147-MER), Histone H2A type 1, Histone H2B 1.1, ...
著者Park, S.H, Lee, Y.T, Ayoub, A, Dou, Y, Cho, U.
登録日2020-03-13
公開日2021-03-31
最終更新日2024-05-29
実験手法ELECTRON MICROSCOPY (4.6 Å)
主引用文献Mechanism for DPY30 and ASH2L intrinsically disordered regions to modulate the MLL/SET1 activity on chromatin.
Nat Commun, 12, 2021
4YUS
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BU of 4yus by Molmil
Crystal structure of photoactivated adenylyl cyclase of a cyanobacteriaOscillatoria acuminata in hexagonal form
分子名称: FLAVIN MONONUCLEOTIDE, Family 3 adenylate cyclase
著者Park, S.-Y, Ohki, M, Sugiyama, K, Kawai, F, Iseki, M.
登録日2015-03-19
公開日2016-06-01
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structural insight into photoactivation of an adenylate cyclase from a photosynthetic cyanobacterium
Proc.Natl.Acad.Sci.USA, 113, 2016
8SQG
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BU of 8sqg by Molmil
OXA-48 bound to inhibitor CDD-2801
分子名称: (1M)-3'-(benzyloxy)-5-[2-(methylamino)-2-oxoethoxy][1,1'-biphenyl]-3,4'-dicarboxylic acid, BICARBONATE ION, Beta-lactamase
著者Park, S, Judge, A, Fan, J, Sankaran, B, Palzkill, T.
登録日2023-05-04
公開日2024-01-03
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.03 Å)
主引用文献Exploiting the Carboxylate-Binding Pocket of beta-Lactamase Enzymes Using a Focused DNA-Encoded Chemical Library.
J.Med.Chem., 67, 2024
1CMN
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BU of 1cmn by Molmil
CRYSTAL STRUCTURES OF FERRIC-NO COMPLEXES OF FUNGAL NITRIC OXIDE REDUCTASE AND THEIR SER286 MUTANTS AT CRYOGENIC TEMPERATURE
分子名称: CYTOCHROME P450, NITRIC OXIDE, PROTOPORPHYRIN IX CONTAINING FE
著者Park, S.-Y, Shiro, Y.
登録日1999-05-07
公開日2000-03-22
最終更新日2023-08-09
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Proton delivery in NO reduction by fungal nitric-oxide reductase. Cryogenic crystallography, spectroscopy, and kinetics of ferric-NO complexes of wild-type and mutant enzymes.
J.Biol.Chem., 275, 2000
1CMJ
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BU of 1cmj by Molmil
CRYSTAL STRUCTURES OF FERRIC-NO COMPLEXES OF FUNGAL NITRIC OXIDE REDUCTASE AND THEIR SER286 MUTANTS AT CRYOGENIC TEMPERATURE
分子名称: CYTOCHROME P450, NITRIC OXIDE, PROTOPORPHYRIN IX CONTAINING FE
著者Park, S.-Y, Shiro, Y.
登録日1999-05-07
公開日2000-03-22
最終更新日2023-08-09
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Proton delivery in NO reduction by fungal nitric-oxide reductase. Cryogenic crystallography, spectroscopy, and kinetics of ferric-NO complexes of wild-type and mutant enzymes.
J.Biol.Chem., 275, 2000
1CL6
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BU of 1cl6 by Molmil
CRYSTAL STRUCTURES OF FERRIC-NO COMPLEXES OF FUNGAL NITRIC OXIDE REDUCTASE AND ITS SER286 MUTANTS AT CRYOGENIC TEMPERATURE
分子名称: CYTOCHROME P450, NITRIC OXIDE, PROTOPORPHYRIN IX CONTAINING FE
著者Park, S.-Y, Shiro, Y.
登録日1999-05-06
公開日2000-03-22
最終更新日2023-08-09
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Proton delivery in NO reduction by fungal nitric-oxide reductase. Cryogenic crystallography, spectroscopy, and kinetics of ferric-NO complexes of wild-type and mutant enzymes.
J.Biol.Chem., 275, 2000
4YWV
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BU of 4ywv by Molmil
Structural insight into the substrate inhibition mechanism of NADP+-dependent succinic semialdehyde dehydrogenase from Streptococcus pyogenes
分子名称: 4-oxobutanoic acid, SULFATE ION, Succinic semialdehyde dehydrogenase
著者Park, S.A, Jang, E.H, Chi, Y.M, Lee, K.S.
登録日2015-03-21
公開日2015-05-06
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Structural insight into the substrate inhibition mechanism of NADP(+)-dependent succinic semialdehyde dehydrogenase from Streptococcus pyogenes.
Biochem.Biophys.Res.Commun., 461, 2015
8SQF
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BU of 8sqf by Molmil
OXA-48 bound to inhibitor CDD-2725
分子名称: (1M)-3'-(benzyloxy)-5-hydroxy[1,1'-biphenyl]-3,4'-dicarboxylic acid, BICARBONATE ION, Beta-lactamase
著者Park, S, Judge, A, Fan, J, Sankaran, B, Prasad, B.V.V, Palzkill, T.
登録日2023-05-04
公開日2024-01-03
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Exploiting the Carboxylate-Binding Pocket of beta-Lactamase Enzymes Using a Focused DNA-Encoded Chemical Library.
J.Med.Chem., 67, 2024
5X03
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BU of 5x03 by Molmil
Crystal structure of the C-terminal domain of Bacillus subtilis GabR reveals a closed conformation by the binding of gamma-aminobutyric acid, inducing the transcriptional activation
分子名称: GAMMA-AMINO-BUTANOIC ACID, HTH-type transcriptional regulatory protein GabR, PYRIDOXAL-5'-PHOSPHATE
著者Park, S.A, Lee, K.S.
登録日2017-01-19
公開日2017-05-24
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structure of the C-terminal domain of Bacillus subtilis GabR reveals a closed conformation by gamma-aminobutyric acid binding, inducing transcriptional activation
Biochem. Biophys. Res. Commun., 487, 2017
2KLV
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BU of 2klv by Molmil
Membrane-bound structure of the Pf1 major coat protein in DHPC micelle
分子名称: Capsid protein G8P
著者Park, S, Son, W, Mukhopadhyay, R, Valafar, H, Opella, S.J.
登録日2009-07-08
公開日2009-10-06
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Phage-induced alignment of membrane proteins enables the measurement and structural analysis of residual dipolar couplings with dipolar waves and lambda-maps.
J.Am.Chem.Soc., 131, 2009
5Y6C
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BU of 5y6c by Molmil
Crystal structure of ZmASCH S128A mutant protein from Zymomonas mobilis
分子名称: CHLORIDE ION, Helix-turn-helix domain-containing protein
著者Park, S.-Y, Kim, J.-S.
登録日2017-08-11
公開日2018-07-18
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.398 Å)
主引用文献Crystal structure of an ASCH protein from Zymomonas mobilis and its ribonuclease activity specific for single-stranded RNA.
Sci Rep, 7, 2017
5Y6B
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BU of 5y6b by Molmil
Crystal structure of ZmASCH Y47F mutant protein from Zymomonas mobilis
分子名称: Helix-turn-helix domain-containing protein
著者Park, S.-Y, Kim, J.-S.
登録日2017-08-11
公開日2018-07-18
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structure of an ASCH protein from Zymomonas mobilis and its ribonuclease activity specific for single-stranded RNA.
Sci Rep, 7, 2017

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