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PDB: 402 results

6AI4
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BU of 6ai4 by Molmil
Structure of Transferase mutant-C21S,C199S
Descriptor: Non-LEE encoded effector protein NleB
Authors:Park, J.B, Yoo, Y, Kim, J.
Deposit date:2018-08-21
Release date:2018-10-24
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Transferase mutant-C21S,C199S
To Be Published
6K1D
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BU of 6k1d by Molmil
Crystal structure of EXD2 exonuclease domain soaked in Mn and GMP
Descriptor: Exonuclease 3'-5' domain-containing protein 2, MANGANESE (II) ION
Authors:Park, J, Lee, C.
Deposit date:2019-05-10
Release date:2019-05-22
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3 Å)
Cite:The structure of human EXD2 reveals a chimeric 3' to 5' exonuclease domain that discriminates substrates via metal coordination.
Nucleic Acids Res., 47, 2019
6K1C
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BU of 6k1c by Molmil
Crystal structure of EXD2 exonuclease domain soaked in Mg and dGMP
Descriptor: Exonuclease 3'-5' domain-containing protein 2, MAGNESIUM ION
Authors:Park, J, Lee, C.
Deposit date:2019-05-10
Release date:2019-05-22
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:The structure of human EXD2 reveals a chimeric 3' to 5' exonuclease domain that discriminates substrates via metal coordination.
Nucleic Acids Res., 47, 2019
6K18
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BU of 6k18 by Molmil
Crystal structure of EXD2 exonuclease domain soaked in Mn
Descriptor: Exonuclease 3'-5' domain-containing protein 2, MANGANESE (II) ION
Authors:Park, J, Lee, C.
Deposit date:2019-05-10
Release date:2019-05-22
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.303 Å)
Cite:The structure of human EXD2 reveals a chimeric 3' to 5' exonuclease domain that discriminates substrates via metal coordination.
Nucleic Acids Res., 47, 2019
6K1A
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BU of 6k1a by Molmil
Crystal structure of EXD2 exonuclease domain soaked in Mn and Mg
Descriptor: Exonuclease 3'-5' domain-containing protein 2, MAGNESIUM ION, MANGANESE (II) ION
Authors:Park, J, Lee, C.
Deposit date:2019-05-10
Release date:2019-05-22
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.602 Å)
Cite:The structure of human EXD2 reveals a chimeric 3' to 5' exonuclease domain that discriminates substrates via metal coordination.
Nucleic Acids Res., 47, 2019
6K1B
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BU of 6k1b by Molmil
Crystal structure of EXD2 exonuclease domain soaked in Mn and dGMP
Descriptor: Exonuclease 3'-5' domain-containing protein 2, MANGANESE (II) ION
Authors:Park, J, Lee, C.
Deposit date:2019-05-10
Release date:2019-05-22
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.605 Å)
Cite:The structure of human EXD2 reveals a chimeric 3' to 5' exonuclease domain that discriminates substrates via metal coordination.
Nucleic Acids Res., 47, 2019
6K19
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BU of 6k19 by Molmil
Crystal structure of EXD2 exonuclease domain soaked in Mg
Descriptor: Exonuclease 3'-5' domain-containing protein 2, MAGNESIUM ION
Authors:Park, J, Lee, C.
Deposit date:2019-05-10
Release date:2019-05-22
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.202 Å)
Cite:The structure of human EXD2 reveals a chimeric 3' to 5' exonuclease domain that discriminates substrates via metal coordination.
Nucleic Acids Res., 47, 2019
6K17
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BU of 6k17 by Molmil
Crystal structure of EXD2 exonuclease domain
Descriptor: Exonuclease 3'-5' domain-containing protein 2, SODIUM ION
Authors:Park, J, Lee, C.
Deposit date:2019-05-10
Release date:2019-05-22
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.602 Å)
Cite:The structure of human EXD2 reveals a chimeric 3' to 5' exonuclease domain that discriminates substrates via metal coordination.
Nucleic Acids Res., 47, 2019
6K1E
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BU of 6k1e by Molmil
Crystal structure of EXD2 exonuclease domain soaked in Mg and GMP
Descriptor: Exonuclease 3'-5' domain-containing protein 2, MAGNESIUM ION
Authors:Park, J, Lee, C.
Deposit date:2019-05-10
Release date:2019-05-22
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:The structure of human EXD2 reveals a chimeric 3' to 5' exonuclease domain that discriminates substrates via metal coordination.
Nucleic Acids Res., 47, 2019
6KY2
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BU of 6ky2 by Molmil
Crystal Structure of Arginine Kinase wild type from Daphnia magna
Descriptor: Arginine kinase, PHOSPHATE ION
Authors:Park, J.H, Rao, Z, Kim, S.Y, Kim, D.S.
Deposit date:2019-09-16
Release date:2020-09-16
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.87 Å)
Cite:Insight into Structural Aspects of Histidine 284 of Daphnia magna Arginine Kinase.
Mol.Cells, 43, 2020
5XF2
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BU of 5xf2 by Molmil
Crystal structure of SeMet-HldC from Burkholderia pseudomallei
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Putative cytidylyltransferase
Authors:Park, J, Kim, H, Kim, S, Lee, D, Shin, D.H.
Deposit date:2017-04-07
Release date:2017-07-19
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Expression and crystallographic studies of D-glycero-beta-D-manno-heptose-1-phosphate adenylyltransferase from Burkholderia pseudomallei
Acta Crystallogr F Struct Biol Commun, 73, 2017
5Z0B
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BU of 5z0b by Molmil
Crystal structure of plasma-derived human serum albumin
Descriptor: DI(HYDROXYETHYL)ETHER, LINOLEIC ACID, OCTANOIC ACID (CAPRYLIC ACID), ...
Authors:Park, J, Kim, M.-S, Shin, D.H.
Deposit date:2017-12-19
Release date:2018-12-19
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.17 Å)
Cite:The crystal structure of plasma-derived human serum albumin
To Be Published
5X9Q
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BU of 5x9q by Molmil
Crystal structure of HldC from Burkholderia pseudomallei
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Putative cytidylyltransferase
Authors:Park, J, Kim, H, Kim, S, Lee, D, Shin, D.H.
Deposit date:2017-03-08
Release date:2017-12-27
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of D-glycero-Beta-D-manno-heptose-1-phosphate adenylyltransferase from Burkholderia pseudomallei.
Proteins, 86, 2018
5XHW
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BU of 5xhw by Molmil
Crystal structure of HddC from Yersinia pseudotuberculosis
Descriptor: Putative 6-deoxy-D-mannoheptose pathway protein, SULFATE ION
Authors:Park, J, Kim, H, Kim, S, Shin, D.H.
Deposit date:2017-04-24
Release date:2018-04-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of d-glycero-alpha-d-manno-heptose-1-phosphate guanylyltransferase from Yersinia pseudotuberculosis.
Biochim. Biophys. Acta, 1866, 2018
5XHP
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BU of 5xhp by Molmil
Transferase with ligands
Descriptor: ARGININE, MANGANESE (II) ION, Putative cytoplasmic protein, ...
Authors:Park, J, Yoo, Y, Kim, Y.H, Cho, H.S.
Deposit date:2017-04-22
Release date:2018-05-02
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structure of L-arginine and UDP bounded glycosyltransfease
To Be Published
7NQK
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BU of 7nqk by Molmil
Cryo-EM structure of the mammalian peptide transporter PepT2
Descriptor: Solute carrier family 15 member 2, nanobody
Authors:Parker, J.L, Deme, J.C, Lea, S.M, Newstead, S.
Deposit date:2021-03-01
Release date:2021-07-07
Last modified:2021-10-13
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Cryo-EM structure of PepT2 reveals structural basis for proton-coupled peptide and prodrug transport in mammals.
Sci Adv, 7, 2021
7ZKW
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BU of 7zkw by Molmil
Crystal structure of cystinosin from Arabidopsis thaliana in complex with Cystine and sybody
Descriptor: Cystinosin homolog, L-cystine, sybody
Authors:Parker, J.L, Loebel, M, Newstead, S.
Deposit date:2022-04-13
Release date:2022-08-31
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (3.372 Å)
Cite:Structural basis for proton coupled cystine transport by cystinosin.
Nat Commun, 13, 2022
7P9V
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BU of 7p9v by Molmil
Cryo EM structure of System XC-
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 4F2 cell-surface antigen heavy chain, Cystine/glutamate transporter
Authors:Parker, J.L, Deme, J.C, Lea, S.M, Newstead, S.
Deposit date:2021-07-28
Release date:2021-11-17
Last modified:2022-02-02
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Molecular basis for redox control by the human cystine/glutamate antiporter system xc .
Nat Commun, 12, 2021
7P9U
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BU of 7p9u by Molmil
Cryo EM structure of System XC- in complex with glutamate
Descriptor: 4F2 cell-surface antigen heavy chain, Cystine/glutamate transporter, GLUTAMIC ACID
Authors:Parker, J.L, Deme, J.C, Lea, S.M, Newstead, S.
Deposit date:2021-07-28
Release date:2021-11-17
Last modified:2022-02-02
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Molecular basis for redox control by the human cystine/glutamate antiporter system xc .
Nat Commun, 12, 2021
8APY
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BU of 8apy by Molmil
Crystal structure of the H12A variant of the KDEL receptor bound to sybody
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, ER lumen protein-retaining receptor 2, Synthetic nanobody
Authors:Parker, J.L, Smith, K, Newstead, S.
Deposit date:2022-08-10
Release date:2023-08-23
Method:X-RAY DIFFRACTION (2.34 Å)
Cite:Crystal structure of the H12A variant of the KDEL receptor bound to sybody
To Be Published
8BVS
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BU of 8bvs by Molmil
Cryo-EM structure of rat SLC22A6 bound to tenofovir
Descriptor: CHLORIDE ION, Solute carrier family 22 member 6, Synthetic nanobody (Sybody), ...
Authors:Parker, J.L, Kato, T, Newstead, S.
Deposit date:2022-12-05
Release date:2023-07-19
Last modified:2023-11-22
Method:ELECTRON MICROSCOPY (3.61 Å)
Cite:Molecular basis for selective uptake and elimination of organic anions in the kidney by OAT1.
Nat.Struct.Mol.Biol., 30, 2023
8BVR
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BU of 8bvr by Molmil
Cryo-EM structure of rat SLC22A6 in the apo state
Descriptor: PHOSPHATE ION, Solute carrier family 22 member 6, Synthetic nanobody (Sybody)
Authors:Parker, J.L, Kato, T, Newstead, S.
Deposit date:2022-12-05
Release date:2023-07-19
Last modified:2023-11-22
Method:ELECTRON MICROSCOPY (3.52 Å)
Cite:Molecular basis for selective uptake and elimination of organic anions in the kidney by OAT1.
Nat.Struct.Mol.Biol., 30, 2023
8BVT
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BU of 8bvt by Molmil
Cryo-EM structure of rat SLC22A6 bound to probenecid
Descriptor: 4-(dipropylsulfamoyl)benzoic acid, Solute carrier family 22 member 6, Synthetic nanobody (Sybody)
Authors:Parker, J.L, Kato, T, Newstead, S.
Deposit date:2022-12-06
Release date:2023-07-19
Last modified:2023-11-22
Method:ELECTRON MICROSCOPY (3.94 Å)
Cite:Molecular basis for selective uptake and elimination of organic anions in the kidney by OAT1.
Nat.Struct.Mol.Biol., 30, 2023
8BW7
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BU of 8bw7 by Molmil
Cryo-EM structure of rat SLC22A6 bound to alpha-ketoglutaric acid
Descriptor: 2-OXOGLUTARIC ACID, CHLORIDE ION, Solute carrier family 22 member 6, ...
Authors:Parker, J.L, Kato, T, Newstead, S.
Deposit date:2022-12-06
Release date:2023-07-19
Last modified:2023-11-22
Method:ELECTRON MICROSCOPY (3.53 Å)
Cite:Molecular basis for selective uptake and elimination of organic anions in the kidney by OAT1.
Nat.Struct.Mol.Biol., 30, 2023
5UFE
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BU of 5ufe by Molmil
Wild-type K-Ras(GNP)/R11.1.6 complex
Descriptor: CADMIUM ION, CALCIUM ION, CHLORIDE ION, ...
Authors:Parker, J.A, Mattos, C.
Deposit date:2017-01-04
Release date:2017-08-02
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.302 Å)
Cite:An engineered protein antagonist of K-Ras/B-Raf interaction.
Sci Rep, 7, 2017

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