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PDB: 532 results

3OR7
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BU of 3or7 by Molmil
On the structural basis of modal gating behavior in K+channels - E71I
Descriptor: POTASSIUM ION, Voltage-gated potassium channel, antibody fab fragment heavy chain, ...
Authors:Chakrapani, S, Cordero-Morales, J.F, Jogini, V, Pan, A.C, Cortes, D.M, Roux, B, Perozo, E.
Deposit date:2010-09-06
Release date:2011-01-05
Last modified:2018-08-29
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:On the structural basis of modal gating behavior in K(+) channels.
Nat.Struct.Mol.Biol., 18, 2011
6P5G
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BU of 6p5g by Molmil
Photoactive Yellow Protein PYP Dark Full
Descriptor: Photoactive yellow protein
Authors:Pandey, S, Schmidt, M.
Deposit date:2019-05-30
Release date:2019-09-18
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Time-resolved serial femtosecond crystallography at the European XFEL.
Nat.Methods, 17, 2020
6P4I
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BU of 6p4i by Molmil
Photoactive Yellow Protein PYP 10ps
Descriptor: Photoactive yellow protein
Authors:Pandey, S, Schmidt, M.
Deposit date:2019-05-27
Release date:2019-09-18
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Time-resolved serial femtosecond crystallography at the European XFEL.
Nat.Methods, 17, 2020
6P5F
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BU of 6p5f by Molmil
Photoactive Yellow Protein PYP Pure Dark
Descriptor: Photoactive yellow protein
Authors:Pandey, S, Schmidt, M.
Deposit date:2019-05-30
Release date:2019-09-18
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Time-resolved serial femtosecond crystallography at the European XFEL.
Nat.Methods, 17, 2020
6P5E
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BU of 6p5e by Molmil
Photoactive Yellow Protein PYP 80ps
Descriptor: Photoactive yellow protein
Authors:Pandey, S, Schmidt, M.
Deposit date:2019-05-30
Release date:2019-09-18
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Time-resolved serial femtosecond crystallography at the European XFEL.
Nat.Methods, 17, 2020
6P5D
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BU of 6p5d by Molmil
Photoactive Yellow Protein PYP 30ps
Descriptor: Photoactive yellow protein
Authors:Pandey, S, Schmidt, M.
Deposit date:2019-05-30
Release date:2019-09-18
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Time-resolved serial femtosecond crystallography at the European XFEL.
Nat.Methods, 17, 2020
5XPJ
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BU of 5xpj by Molmil
Crystal Structure of Periplasmic glucose binding protein ppGBP deletion mutant- Del-ppGBP
Descriptor: Binding protein component of ABC sugar transporter
Authors:Pandey, S, Phale, P.S, Bhaumik, P.
Deposit date:2017-06-02
Release date:2018-10-10
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural modulation of a periplasmic sugar-binding protein probes into its evolutionary ancestry.
J. Struct. Biol., 204, 2018
5MS7
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BU of 5ms7 by Molmil
Crystal structure of the legionella pneumophila effector protein RavZ_20-502
Descriptor: BARIUM ION, GLYCEROL, Legionella pneumophila effector protein RavZ
Authors:Pantoom, S, Vetter, I.R, Wu, Y.W.
Deposit date:2016-12-31
Release date:2017-04-19
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Elucidation of the anti-autophagy mechanism of the Legionella effector RavZ using semisynthetic LC3 proteins.
Elife, 6, 2017
6PU2
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BU of 6pu2 by Molmil
Dark, Mutant H275T , 100K, PCM Myxobacterial Phytochrome, P2
Descriptor: 3-[(2Z)-2-({3-(2-carboxyethyl)-5-[(E)-(4-ethenyl-3-methyl-5-oxo-1,5-dihydro-2H-pyrrol-2-ylidene)methyl]-4-methyl-1H-pyrrol-2-yl}methylidene)-5-{(Z)-[(3E,4S)-3-ethylidene-4-methyl-5-oxopyrrolidin-2-ylidene]methyl}-4-methyl-2H-pyrrol-3-yl]propanoic acid, Photoreceptor-histidine kinase BphP
Authors:Pandey, S, Schmidt, M, Stojkovic, E.A.
Deposit date:2019-07-16
Release date:2019-10-09
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:High-resolution crystal structures of a myxobacterial phytochrome at cryo and room temperatures.
Struct Dyn., 6, 2019
6PTQ
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BU of 6ptq by Molmil
Dark, Room Temperature, PCM Myxobacterial Phytochrome, P2, Wild Type
Descriptor: 3-[(2Z)-2-({3-(2-carboxyethyl)-5-[(E)-(4-ethenyl-3-methyl-5-oxo-1,5-dihydro-2H-pyrrol-2-ylidene)methyl]-4-methyl-1H-pyrrol-2-yl}methylidene)-5-{(Z)-[(3E,4S)-3-ethylidene-4-methyl-5-oxopyrrolidin-2-ylidene]methyl}-4-methyl-2H-pyrrol-3-yl]propanoic acid, BENZAMIDINE, Photoreceptor-histidine kinase BphP
Authors:Pandey, S, Schmidt, M, Stojkovic, E.A.
Deposit date:2019-07-16
Release date:2019-10-09
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:High-resolution crystal structures of a myxobacterial phytochrome at cryo and room temperatures.
Struct Dyn., 6, 2019
7UO6
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BU of 7uo6 by Molmil
NMR structure of Pheromone-binding protein 2 in Ostrinia furnacalis
Descriptor: Pheromone binding protein 2
Authors:Ayyappan, S, Mohanty, S.
Deposit date:2022-04-12
Release date:2023-02-15
Method:SOLUTION NMR
Cite:Ostrinia furnacalis PBP2 solution NMR structure: Insight into ligand binding and release mechanisms.
Protein Sci., 31, 2022
6PTX
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BU of 6ptx by Molmil
Dark, 100K, PCM Myxobacterial Phytochrome, P2, Wild Type,
Descriptor: 3-[(2Z)-2-({3-(2-carboxyethyl)-5-[(E)-(4-ethenyl-3-methyl-5-oxo-1,5-dihydro-2H-pyrrol-2-ylidene)methyl]-4-methyl-1H-pyrrol-2-yl}methylidene)-5-{(Z)-[(3E,4S)-3-ethylidene-4-methyl-5-oxopyrrolidin-2-ylidene]methyl}-4-methyl-2H-pyrrol-3-yl]propanoic acid, Photoreceptor-histidine kinase BphP
Authors:Pandey, S, Schmidt, M, Stojkovic, E.A.
Deposit date:2019-07-16
Release date:2019-10-09
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:High-resolution crystal structures of a myxobacterial phytochrome at cryo and room temperatures.
Struct Dyn., 6, 2019
6Y09
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BU of 6y09 by Molmil
Crystal structure of Atg16L in complex with GTP-bound Rab33B (Q92L)
Descriptor: 1,2-ETHANEDIOL, Autophagy-related protein 16-1, DI(HYDROXYETHYL)ETHER, ...
Authors:Pantoom, S, Wu, Y.W.
Deposit date:2020-02-07
Release date:2020-09-30
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:RAB33B recruits the ATG16L1 complex to the phagophore via a noncanonical RAB binding protein.
Autophagy, 17, 2021
3KIP
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BU of 3kip by Molmil
Crystal structure of type-II 3-dehydroquinase from C. albicans
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 3-dehydroquinase, type II, ...
Authors:Trapani, S, Schoehn, G, Navaza, J, Abergel, C.
Deposit date:2009-11-02
Release date:2010-05-12
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Macromolecular crystal data phased by negative-stained electron-microscopy reconstructions.
Acta Crystallogr.,Sect.D, 66, 2010
6NQ6
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BU of 6nq6 by Molmil
Structure & function of a new Aspartylglucosaminuria variant
Descriptor: N(4)-(Beta-N-acetylglucosaminyl)-L-asparaginase
Authors:Pande, S, Guo, H.C.
Deposit date:2019-01-19
Release date:2019-04-17
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:The T99K variant of glycosylasparaginase shows a new structural mechanism of the genetic disease aspartylglucosaminuria.
Protein Sci., 28, 2019
6ZAY
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BU of 6zay by Molmil
Crystal structure of Atg16L in complex with GDP-bound Rab33B
Descriptor: 1,2-ETHANEDIOL, Autophagy-related protein 16-1, DI(HYDROXYETHYL)ETHER, ...
Authors:Pantoom, S, Wu, Y.W.
Deposit date:2020-06-06
Release date:2020-09-30
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:RAB33B recruits the ATG16L1 complex to the phagophore via a noncanonical RAB binding protein.
Autophagy, 17, 2021
4RZJ
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BU of 4rzj by Molmil
Structure of the complex of type 1 ribosome inactivating protein from Momordica balsamina with N-acetylglucosamine at 1.98 Angstrom resolution using crystals grown in different conditions
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, GLYCEROL, Ribosome inactivating protein
Authors:Pandey, S, Kushwaha, G.S, Kaur, P, Sharma, S, Singh, T.P.
Deposit date:2014-12-22
Release date:2015-01-14
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Structure of the complex of type 1 ribosome inactivating protein from Momordica balsamina with N-acetylglucosamine at 1.98 Angstrom resolution using crystals grown in different conditions
TO BE PUBLISHED
6S44
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BU of 6s44 by Molmil
Faba bean necrotic stunt virus (FBNSV)
Descriptor: Capsid protein
Authors:Trapani, S, Lai Kee Him, J, Blanc, S, Bron, P.
Deposit date:2019-06-26
Release date:2020-07-15
Last modified:2024-07-10
Method:ELECTRON MICROSCOPY (3.19 Å)
Cite:Structure-guided mutagenesis of the capsid protein indicates that a nanovirus requires assembled viral particles for systemic infection.
Plos Pathog., 19, 2023
6VTJ
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BU of 6vtj by Molmil
Structure of a thiolation-reductase di-domain from an archaeal non-ribosomal peptide synthetase
Descriptor: 4'-PHOSPHOPANTETHEINE, Non-ribosomal peptide synthetase
Authors:Deshpande, S, Lott, J.S, Lee, T.V.
Deposit date:2020-02-12
Release date:2020-02-26
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structural characterization of a PCP-R didomain from an archaeal nonribosomal peptide synthetase reveals novel interdomain interactions.
J.Biol.Chem., 296, 2021
6VTZ
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BU of 6vtz by Molmil
Structure of a thiolation-reductase di-domain from an archaeal non-ribosomal peptide synthetase
Descriptor: Non-ribosomal peptide synthetase
Authors:Deshpande, S, Lott, J.S, Lee, T.V.
Deposit date:2020-02-13
Release date:2020-02-26
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Structural characterization of a PCP-R didomain from an archaeal nonribosomal peptide synthetase reveals novel interdomain interactions.
J.Biol.Chem., 296, 2021
7ZC9
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BU of 7zc9 by Molmil
Human Pikachurin/EGFLAM C-terminal Laminin-G domain (LG3)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Pikachurin, SULFATE ION
Authors:Pantalone, S, Forneris, F.
Deposit date:2022-03-26
Release date:2023-07-19
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure of the photoreceptor synaptic assembly of the extracellular matrix protein pikachurin with the orphan receptor GPR179.
Sci.Signal., 16, 2023
7ZCB
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BU of 7zcb by Molmil
Human Pikachurin/EGFLAM N-terminal Fibronectin-III (1-2) domains
Descriptor: CHLORIDE ION, Pikachurin, beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Pantalone, S, Savino, S, Viti, L.V, Forneris, F.
Deposit date:2022-03-26
Release date:2023-07-19
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure of the photoreceptor synaptic assembly of the extracellular matrix protein pikachurin with the orphan receptor GPR179.
Sci.Signal., 16, 2023
6RTK
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BU of 6rtk by Molmil
CryoEM structure of modified Turnip Yellows Virus devoid of minor capsid protein readthrough domain
Descriptor: Major capsid protein
Authors:Trapani, S, Lai Kee Him, J, Hoh, F, Brault, V, Bron, P.
Deposit date:2019-05-24
Release date:2020-07-08
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (3.47 Å)
Cite:CryoEM structure of modified Turnip Yellows Virus devoid of minor capsid protein readthrough domain
To Be Published
6DEY
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BU of 6dey by Molmil
Aspartylglucosaminuria mutant structure and function
Descriptor: Glycosylasparaginase, residues 188-331, residues 38-178
Authors:Pande, S, Laksminarasimhan, D, Guo, H.C.
Deposit date:2018-05-13
Release date:2018-08-01
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.63 Å)
Cite:Biochemical and structural insights into an allelic variant causing the lysosomal storage disorder - aspartylglucosaminuria.
FEBS Lett., 592, 2018
6U2J
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BU of 6u2j by Molmil
EM structure of MPEG-1 (L425K, alpha conformation) soluble pre-pore complex
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Macrophage-expressed gene 1 protein
Authors:Pang, S.S, Bayly-Jones, C.
Deposit date:2019-08-20
Release date:2019-09-25
Last modified:2020-07-29
Method:ELECTRON MICROSCOPY (2.37 Å)
Cite:The cryo-EM structure of the acid activatable pore-forming immune effector Macrophage-expressed gene 1.
Nat Commun, 10, 2019

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