Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 45955 results

1XFT
DownloadVisualize
BU of 1xft by Molmil
Synchrotron X-ray Powder Diffraction Study of Hexagonal Turkey Egg-white Lysozyme
Descriptor: Lysozyme C
Authors:Margiolaki, I, Wright, J.P.
Deposit date:2004-09-15
Release date:2005-04-05
Last modified:2023-10-25
Method:POWDER DIFFRACTION (3.35 Å)
Cite:Synchrotron X-ray powder diffraction study of hexagonal turkey egg-white lysozyme.
Acta Crystallogr.,Sect.D, 61, 2005
1MX8
DownloadVisualize
BU of 1mx8 by Molmil
Two homologous rat cellular retinol-binding proteins differ in local structure and flexibility
Descriptor: CELLULAR RETINOL-BINDING PROTEIN I, HOLO, RETINOL
Authors:Lu, J, Cistola, D.P, Li, E.
Deposit date:2002-10-01
Release date:2003-07-29
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Two homologous rat cellular retinol-binding proteins differ in local conformational flexibility.
J.Mol.Biol., 330, 2003
2NY4
DownloadVisualize
BU of 2ny4 by Molmil
HIV-1 gp120 Envelope Glycoprotein (K231C, T257S, E268C, S334A, S375W) Complexed with CD4 and Antibody 17b
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, ANTIBODY 17B, HEAVY CHAIN, ...
Authors:Zhou, T, Xu, L, Dey, B, Hessell, A.J, Van Ryk, D, Xiang, S.H, Yang, X, Zhang, M.Y, Zwick, M.B, Arthos, J, Burton, D.R, Dimitrov, D.S, Sodroski, J, Wyatt, R, Nabel, G.J, Kwong, P.D.
Deposit date:2006-11-20
Release date:2007-02-06
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural definition of a conserved neutralization epitope on HIV-1 gp120.
Nature, 445, 2007
1J9Z
DownloadVisualize
BU of 1j9z by Molmil
CYPOR-W677G
Descriptor: FLAVIN MONONUCLEOTIDE, FLAVIN-ADENINE DINUCLEOTIDE, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ...
Authors:Hubbard, P.A, Shen, A.L, Paschke, R, Kasper, C.B, Kim, J.J.
Deposit date:2001-05-29
Release date:2001-08-22
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:NADPH-cytochrome P450 oxidoreductase. Structural basis for hydride and electron transfer.
J.Biol.Chem., 276, 2001
4ISA
DownloadVisualize
BU of 4isa by Molmil
Crystal Structure of the Escherichia coli LpxC/BB-78485 complex
Descriptor: (2R)-N-hydroxy-3-naphthalen-2-yl-2-[(naphthalen-2-ylsulfonyl)amino]propanamide, (4S,5S)-1,2-DITHIANE-4,5-DIOL, FORMIC ACID, ...
Authors:Lee, C.-J, Zhou, P.
Deposit date:2013-01-16
Release date:2013-10-30
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural Basis of the Promiscuous Inhibitor Susceptibility of Escherichia coli LpxC.
Acs Chem.Biol., 9, 2014
5QK1
DownloadVisualize
BU of 5qk1 by Molmil
PanDDA analysis group deposition of models with modelled events (e.g. bound ligands) -- Crystal Structure of NUDT5 in complex with Z2027049478
Descriptor: 1,2-ETHANEDIOL, 5-(1,3-thiazol-2-yl)-1H-1,2,4-triazole, ADP-sugar pyrophosphatase, ...
Authors:Dubianok, Y, Collins, P, Krojer, T, Wright, N, Strain-Damerell, C, Burgess-Brown, N, Bountra, C, Arrowsmith, C.H, Edwards, A, Huber, K, von Delft, F.
Deposit date:2018-10-31
Release date:2018-12-19
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.49 Å)
Cite:PanDDA analysis group deposition of models with modelled events (e.g. bound ligands)
To Be Published
2AGD
DownloadVisualize
BU of 2agd by Molmil
Crystal Structure of Human M340H-Beta-1,4-Galactosyltransferase-I(M340H-B4Gal-T1) in Complex with GlcNAc-beta1,4-Man-alpha1,3-Man-beta-OR
Descriptor: 1,4-DIETHYLENE DIOXIDE, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose, ...
Authors:Ramasamy, V, Ramakrishnan, B, Boeggeman, E, Ratner, D.M, Seeberger, P.H, Qasba, P.K.
Deposit date:2005-07-26
Release date:2005-10-04
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Oligosaccharide Preferences of beta1,4-Galactosyltransferase-I: Crystal Structures of Met340His Mutant of Human beta1,4-Galactosyltransferase-I with a Pentasaccharide and Trisaccharides of the N-Glycan Moiety
J.Mol.Biol., 353, 2005
5QJB
DownloadVisualize
BU of 5qjb by Molmil
PanDDA analysis group deposition of models with modelled events (e.g. bound ligands) -- Crystal Structure of NUDT5 in complex with Z1787627869
Descriptor: 1,2-ETHANEDIOL, 5-chloro-N-methyl-N-{[(3R)-oxolan-3-yl]methyl}pyrimidin-4-amine, ADP-sugar pyrophosphatase, ...
Authors:Dubianok, Y, Collins, P, Krojer, T, Wright, N, Strain-Damerell, C, Burgess-Brown, N, Bountra, C, Arrowsmith, C.H, Edwards, A, Huber, K, von Delft, F.
Deposit date:2018-10-31
Release date:2018-12-19
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.66 Å)
Cite:PanDDA analysis group deposition of models with modelled events (e.g. bound ligands)
To Be Published
5QJO
DownloadVisualize
BU of 5qjo by Molmil
PanDDA analysis group deposition of models with modelled events (e.g. bound ligands) -- Crystal Structure of NUDT5 in complex with Z57292369
Descriptor: 1,2-ETHANEDIOL, 2-methyl-N-(2-methyl-2H-tetrazol-5-yl)propanamide, ADP-sugar pyrophosphatase, ...
Authors:Dubianok, Y, Collins, P, Krojer, T, Wright, N, Strain-Damerell, C, Burgess-Brown, N, Bountra, C, Arrowsmith, C.H, Edwards, A, Huber, K, von Delft, F.
Deposit date:2018-10-31
Release date:2018-12-19
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:PanDDA analysis group deposition of models with modelled events (e.g. bound ligands)
To Be Published
1JA1
DownloadVisualize
BU of 1ja1 by Molmil
CYPOR-Triple Mutant
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, FLAVIN MONONUCLEOTIDE, FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Hubbard, P.A, Shen, A.L, Paschke, R, Kasper, C.B, Kim, J.J.
Deposit date:2001-05-29
Release date:2001-08-22
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:NADPH-cytochrome P450 oxidoreductase. Structural basis for hydride and electron transfer.
J.Biol.Chem., 276, 2001
7UTA
DownloadVisualize
BU of 7uta by Molmil
CryoEM structure of Azotobacter vinelandii nitrogenase complex (2:1 FeP:MoFeP) inhibited by BeFx during catalytic N2 reduction
Descriptor: 3-HYDROXY-3-CARBOXY-ADIPIC ACID, ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM, ...
Authors:Rutledge, H.L, Cook, B.D, Nguyen, H.P.M, Tezcan, F.A, Herzik, M.A.
Deposit date:2022-04-26
Release date:2022-08-17
Last modified:2024-02-14
Method:ELECTRON MICROSCOPY (2.4 Å)
Cite:Structures of the nitrogenase complex prepared under catalytic turnover conditions.
Science, 377, 2022
5QK6
DownloadVisualize
BU of 5qk6 by Molmil
PanDDA analysis group deposition of models with modelled events (e.g. bound ligands) -- Crystal Structure of NUDT5 in complex with Z1343633025
Descriptor: 1,2-ETHANEDIOL, 2-fluoro-4-methylbenzamide, ADP-sugar pyrophosphatase, ...
Authors:Dubianok, Y, Collins, P, Krojer, T, Wright, N, Strain-Damerell, C, Burgess-Brown, N, Bountra, C, Arrowsmith, C.H, Edwards, A, Huber, K, von Delft, F.
Deposit date:2018-10-31
Release date:2018-12-19
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.51 Å)
Cite:PanDDA analysis group deposition of models with modelled events (e.g. bound ligands)
To Be Published
1Y03
DownloadVisualize
BU of 1y03 by Molmil
Solution structure of a recombinant type I sculpin antifreeze protein
Descriptor: Antifreeze peptide SS-3
Authors:Kwan, A.H.Y, Fairley, K, Anderberg, P.I, Liew, C.W, Harding, M.M, Mackay, J.P.
Deposit date:2004-11-14
Release date:2005-03-15
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of a recombinant type I sculpin antifreeze protein
Biochemistry, 44, 2005
4DBL
DownloadVisualize
BU of 4dbl by Molmil
Crystal structure of E159Q mutant of BtuCDF
Descriptor: PHOSPHATE ION, SULFATE ION, Vitamin B12 import ATP-binding protein BtuD, ...
Authors:Korkhov, V.M, Mireku, S.M, Hvorup, R.N, Locher, K.P.
Deposit date:2012-01-16
Release date:2012-03-07
Last modified:2012-05-23
Method:X-RAY DIFFRACTION (3.493 Å)
Cite:Asymmetric states of vitamin B12 transporter BtuCD are not discriminated by its cognate substrate binding protein BtuF.
Febs Lett., 586, 2012
2EZW
DownloadVisualize
BU of 2ezw by Molmil
Solution structure of the docking and dimerization domain of the type I alpha regulatory subunit of protein kinase A (RIalpha D/D)
Descriptor: cAMP-dependent protein kinase type I-alpha regulatory subunit
Authors:Banky, P.
Deposit date:2005-11-10
Release date:2006-02-14
Last modified:2018-01-24
Method:SOLUTION NMR
Cite:Related Protein-Protein Interaction Modules Present Drastically Different Surface Topographies Despite A Conserved Helical Platform
J.Mol.Biol., 330, 2003
3HQE
DownloadVisualize
BU of 3hqe by Molmil
Crystal Structure of the decamer CGGGCGCCCG forming a Holliday junction
Descriptor: 5'-D(*CP*GP*GP*GP*CP*GP*CP*CP*CP*G)-3'
Authors:Venkadesh, S, Mandal, P.K, Gautham, N.
Deposit date:2009-06-06
Release date:2010-06-09
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.94 Å)
Cite:Sequence dependent structural variation of Holliday junction - crystal structure of d(CGGGCGCCCG)4
To be Published
1XI4
DownloadVisualize
BU of 1xi4 by Molmil
Clathrin D6 Coat
Descriptor: Clathrin heavy chain, Clathrin light chain A
Authors:Fotin, A, Cheng, Y, Sliz, P, Grigorieff, N, Harrison, S.C, Kirchhausen, T, Walz, T.
Deposit date:2004-09-21
Release date:2004-11-02
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (7.9 Å)
Cite:Molecular model for a complete clathrin lattice from electron cryomicroscopy
Nature, 432, 2004
2EW4
DownloadVisualize
BU of 2ew4 by Molmil
Solution structure of MrIA
Descriptor: MrIA
Authors:Nilsson, K.P, Lovelace, E.S, Caesar, C.E, Tynngard, N, Alewood, P.F, Johansson, H.M, Sharpe, I.A, Lewis, R.J, Daly, N.L, Craik, D.J.
Deposit date:2005-11-02
Release date:2005-11-15
Last modified:2020-06-24
Method:SOLUTION NMR
Cite:Solution structure of chi-conopeptide MrIA, a modulator of the human norepinephrine transporter
Biopolymers, 80, 2005
7BG8
DownloadVisualize
BU of 7bg8 by Molmil
KBV activated particle at acidic pH
Descriptor: Structural polyprotein
Authors:Mukhamedova, L, Plevka, P, Fuzik, T, Hrebik, D.
Deposit date:2021-01-06
Release date:2021-03-10
Last modified:2024-07-10
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Virion structure and in vitro genome release mechanism of dicistrovirus Kashmir bee virus.
J.Virol., 95, 2021
7BBI
DownloadVisualize
BU of 7bbi by Molmil
Joint X-ray/neutron room temperature structure of H/D-exchanged PLL lectin
Descriptor: PLL lectin
Authors:Gajdos, L, Blakeley, M.P, Kumar, A, Wimmerova, M, Haertlein, M, Forsyth, V.T, Imberty, A, Devos, J.M.
Deposit date:2020-12-17
Release date:2021-03-17
Last modified:2024-05-01
Method:NEUTRON DIFFRACTION (1.7 Å), X-RAY DIFFRACTION
Cite:Visualization of hydrogen atoms in a perdeuterated lectin-fucose complex reveals key details of protein-carbohydrate interactions.
Structure, 29, 2021
4KWN
DownloadVisualize
BU of 4kwn by Molmil
A new stabilizing water structure at the substrate binding site in ribosome inactivating protein from Momordica balsamina at 1.80 A resolution
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, GLYCEROL, rRNA N-glycosidase
Authors:Yamini, S, Pandey, S, Singh, A, Bhushan, A, Sinha, M, Kaur, P, Sharma, S, Singh, T.P.
Deposit date:2013-05-24
Release date:2013-06-12
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:A new stabilizing water structure at the substrate binding site in ribosome inactivating protein from Momordica balsamina at 1.80 A resolution
To be Published
1Y69
DownloadVisualize
BU of 1y69 by Molmil
RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radiodurans
Descriptor: 23S ribosomal RNA, 50S ribosomal protein L16, 50S ribosomal protein L27, ...
Authors:Wilson, D.N, Schluenzen, F, Harms, J.M, Yoshida, T, Ohkubo, T, Albrecht, R, Buerger, J, Kobayashi, Y, Fucini, P.
Deposit date:2004-12-04
Release date:2005-03-01
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (3.33 Å)
Cite:X-ray crystallography on ribosome recycling: mechanism of binding and action of RRF on the 50S ribosomal subunit
EMBO J., 24, 2005
7UUY
DownloadVisualize
BU of 7uuy by Molmil
Structure of the sodium/iodide symporter (NIS)
Descriptor: 1,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE, Sodium/iodide cotransporter
Authors:Ravera, S, Nicola, J.P, Salazar-De Simone, G, Sigworth, F, Karakas, E, Amzel, L.M, Bianchet, M, Carrasco, N.
Deposit date:2022-04-29
Release date:2022-12-21
Last modified:2023-01-04
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Structural insights into the mechanism of the sodium/iodide symporter.
Nature, 612, 2022
1MVI
DownloadVisualize
BU of 1mvi by Molmil
N-TYPE CALCIUM CHANNEL BLOCKER, OMEGA-CONOTOXIN MVIIA, NMR, 15 STRUCTURES
Descriptor: MVIIA
Authors:Nielsen, K.J, Thomas, L, Lewis, R.J, Alewood, P.F, Craik, D.J.
Deposit date:1996-08-02
Release date:1997-08-12
Last modified:2017-11-29
Method:SOLUTION NMR
Cite:A consensus structure for omega-conotoxins with different selectivities for voltage-sensitive calcium channel subtypes: comparison of MVIIA, SVIB and SNX-202.
J.Mol.Biol., 263, 1996
1YB3
DownloadVisualize
BU of 1yb3 by Molmil
Conserved hypothetical protein Pfu-178653-001 from Pyrococcus furiosus
Descriptor: UNKNOWN ATOM OR ION, hypothetical protein
Authors:Habel, J, Zhou, W, Chang, J, Zhao, M, Xu, H, Chen, L, Lee, D, Nguyen, D, Chang, S.-H, Horanyi, P, Florence, Q, Tempel, W, Lin, D, Zhang, H, Praissman, J, Jenney Jr, F.E, Adams, M.W.W, Liu, Z.-J, Rose, J.P, Wang, B.-C, Southeast Collaboratory for Structural Genomics (SECSG)
Deposit date:2004-12-19
Release date:2005-02-01
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Conserved hypothetical protein Pfu-178653-001 from Pyrococcus furiosus
To be published

224004

PDB entries from 2024-08-21

PDB statisticsPDBj update infoContact PDBjnumon