Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 45955 results

5O6V
DownloadVisualize
BU of 5o6v by Molmil
The cryo-EM structure of Tick-borne encephalitis virus complexed with Fab fragment of neutralizing antibody 19/1786
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Envelope protein, Fab 19/1786 - Heavy chain, ...
Authors:Fuzik, T, Plevka, P.
Deposit date:2017-06-07
Release date:2018-02-07
Last modified:2020-07-29
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Structure of tick-borne encephalitis virus and its neutralization by a monoclonal antibody.
Nat Commun, 9, 2018
6HCL
DownloadVisualize
BU of 6hcl by Molmil
Crystal structure of a MFS transporter with Ligand at 2.69 Angstroem resolution
Descriptor: (2S)-2-HYDROXYPROPANOIC ACID, Major facilitator superfamily MFS_1, nonyl beta-D-glucopyranoside
Authors:Kalbermatter, D, Bosshart, P, Bonetti, S, Fotiadis, D.
Deposit date:2018-08-15
Release date:2019-07-03
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Mechanistic basis of L-lactate transport in the SLC16 solute carrier family.
Nat Commun, 10, 2019
8CHK
DownloadVisualize
BU of 8chk by Molmil
Human FKBP12 in complex with (1S,5S,6R)-10-((S)-(3,5-dichlorophenyl)sulfonimidoyl)-3-(pyridin-2-ylmethyl)-5-vinyl-3,10-diazabicyclo[4.3.1]decan-2-one
Descriptor: (1S,5S,6R)-10-[[3,5-bis(chloranyl)phenyl]sulfonimidoyl]-5-ethenyl-3-(pyridin-2-ylmethyl)-3,10-diazabicyclo[4.3.1]decan-2-one, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Peptidyl-prolyl cis-trans isomerase FKBP1A
Authors:Meyners, C, Purder, P.L, Hausch, F.
Deposit date:2023-02-08
Release date:2023-09-06
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Deconstructing Protein Binding of Sulfonamides and Sulfonamide Analogues.
Jacs Au, 3, 2023
6WAO
DownloadVisualize
BU of 6wao by Molmil
Crystal structure of Arabidopsis thaliana isochorismoyl-glutamate A pyruvoyl-glutamate lyase in complex with (2-(3-carboxyphenoxy)acetyl)-L-glutamic acid
Descriptor: N-[(3-carboxyphenoxy)acetyl]-L-glutamic acid, Protein ENHANCED PSEUDOMONAS SUSCEPTIBILITY 1
Authors:Torrens-Spence, M.P, Weng, J.K.
Deposit date:2020-03-25
Release date:2021-08-04
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:The structural basis of the isochorismoyl-glutamate pyruvoyl-glutamate lyase activity of Arabidopsis EPS1 in salicylic acid biosynthesis
To Be Published
8CHQ
DownloadVisualize
BU of 8chq by Molmil
The FK1 domain of FKBP51 in complex with (1S,5S,6R)-10-((S)-3,5-dichloro-N-methylphenylsulfonimidoyl)-3-(pyridin-2-ylmethyl)-5-vinyl-3,10-diazabicyclo[4.3.1]decan-2-one
Descriptor: (1S,5S,6R)-10-[S-[3,5-bis(chloranyl)phenyl]-N-methyl-sulfonimidoyl]-5-ethenyl-3-(pyridin-2-ylmethyl)-3,10-diazabicyclo[4.3.1]decan-2-one, Peptidyl-prolyl cis-trans isomerase FKBP5
Authors:Meyners, C, Purder, P.L, Hausch, F.
Deposit date:2023-02-08
Release date:2023-09-06
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.01 Å)
Cite:Deconstructing Protein Binding of Sulfonamides and Sulfonamide Analogues.
Jacs Au, 3, 2023
1U07
DownloadVisualize
BU of 1u07 by Molmil
Crystal Structure of the 92-residue C-term. part of TonB with significant structural changes compared to shorter fragments
Descriptor: TonB protein
Authors:Koedding, J, Killig, F, Polzer, P, Howard, S.P, Diederichs, K, Welte, W.
Deposit date:2004-07-13
Release date:2004-11-30
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.13 Å)
Cite:Crystal structure of a 92-residue c-terminal fragment of TonB from Escherichia coli reveals significant conformational changes compared to structures of smaller TonB fragments
J.Biol.Chem., 280, 2005
3HZ2
DownloadVisualize
BU of 3hz2 by Molmil
Crystal structure of a betagamma-crystallin from an Archaea
Descriptor: Beta/gama crystallin family protein, CALCIUM ION
Authors:Aravind, P, Sankaranarayanan, R.
Deposit date:2009-06-23
Release date:2009-12-01
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:The betagamma-crystallin superfamily contains a universal motif for binding calcium
Biochemistry, 48, 2009
3HZB
DownloadVisualize
BU of 3hzb by Molmil
Crystal structure of a betagamma-crystallin domain from Flavobacterium johnsoniae
Descriptor: CALCIUM ION, Carbohydrate binding protein
Authors:Aravind, P, Sankaranarayanan, R.
Deposit date:2009-06-23
Release date:2009-12-01
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.74 Å)
Cite:The betagamma-crystallin superfamily contains a universal motif for binding calcium
Biochemistry, 48, 2009
6HHT
DownloadVisualize
BU of 6hht by Molmil
Echovirus 18 Open particle without two pentamers
Descriptor: Echovirus 18 capsid protein 1, Echovirus 18 capsid protein 2, Echovirus 18 capsid protein 3
Authors:Buchta, D, Fuzik, T, Hrebik, D, Levdansky, Y, Moravcova, J, Plevka, P.
Deposit date:2018-08-29
Release date:2019-03-20
Last modified:2019-04-10
Method:ELECTRON MICROSCOPY (4.05 Å)
Cite:Enterovirus particles expel capsid pentamers to enable genome release.
Nat Commun, 10, 2019
5O9G
DownloadVisualize
BU of 5o9g by Molmil
Structure of nucleosome-Chd1 complex
Descriptor: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, Chromo domain-containing protein 1, ...
Authors:Farnung, L, Vos, S.M, Wigge, C, Cramer, P.
Deposit date:2017-06-19
Release date:2017-10-11
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (4.8 Å)
Cite:Nucleosome-Chd1 structure and implications for chromatin remodelling.
Nature, 550, 2017
6NWS
DownloadVisualize
BU of 6nws by Molmil
RORgamma Ligand Binding Domain
Descriptor: 2-chloro-6-fluoro-N-(1-{[3-(trifluoromethyl)phenyl]sulfonyl}-2,3-dihydro-1H-indol-6-yl)benzamide, Nuclear receptor ROR-gamma
Authors:Strutzenberg, T.S, Park, H.J, Griffin, P.R.
Deposit date:2019-02-07
Release date:2019-07-10
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.44 Å)
Cite:HDX-MS reveals structural determinants for ROR gamma hyperactivation by synthetic agonists.
Elife, 8, 2019
1EP3
DownloadVisualize
BU of 1ep3 by Molmil
CRYSTAL STRUCTURE OF LACTOCOCCUS LACTIS DIHYDROOROTATE DEHYDROGENASE B. DATA COLLECTED UNDER CRYOGENIC CONDITIONS.
Descriptor: DIHYDROOROTATE DEHYDROGENASE B (PYRD SUBUNIT), DIHYDROOROTATE DEHYDROGENASE B (PYRK SUBUNIT), FE2/S2 (INORGANIC) CLUSTER, ...
Authors:Rowland, P, Norager, S, Jensen, K.F, Larsen, S.
Deposit date:2000-03-27
Release date:2001-01-17
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure of dihydroorotate dehydrogenase B: electron transfer between two flavin groups bridged by an iron-sulphur cluster.
Structure Fold.Des., 8, 2000
1EPM
DownloadVisualize
BU of 1epm by Molmil
A STRUCTURAL COMPARISON OF 21 INHIBITOR COMPLEXES OF THE ASPARTIC PROTEINASE FROM ENDOTHIA PARASITICA
Descriptor: ENDOTHIAPEPSIN, PS2, THR-PHE-GLN-ALA-PSA-LEU-ARG-GLU, ...
Authors:Crawford, M, Cooper, J.B, Strop, P, Blundell, T.L.
Deposit date:1994-07-27
Release date:1994-12-20
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:A structural comparison of 21 inhibitor complexes of the aspartic proteinase from Endothia parasitica.
Protein Sci., 3, 1994
8U1D
DownloadVisualize
BU of 8u1d by Molmil
Cryo-EM structure of vaccine-elicited CD4 binding site antibody DH1285 bound to HIV-1 CH505TFchim.6R.SOSIP.664v4.1 Env Local Refinement
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, DH1285 Heavy Chain, DH1285 Light Chain, ...
Authors:Thakur, B, Stalls, V.D, Acharya, P.
Deposit date:2023-08-31
Release date:2024-01-03
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (4.25 Å)
Cite:Vaccine induction of CD4-mimicking HIV-1 broadly neutralizing antibody precursors in macaques.
Cell, 187, 2024
1EQC
DownloadVisualize
BU of 1eqc by Molmil
EXO-B-(1,3)-GLUCANASE FROM CANDIDA ALBICANS IN COMPLEX WITH CASTANOSPERMINE AT 1.85 A
Descriptor: CASTANOSPERMINE, EXO-(B)-(1,3)-GLUCANASE
Authors:Cutfield, S.M, Davies, G.J, Murshudov, G, Anderson, B.F, Moody, P.C.E, Sullivan, P.A, Cutfield, J.F.
Deposit date:2000-04-03
Release date:2000-10-03
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:The structure of the exo-beta-(1,3)-glucanase from Candida albicans in native and bound forms: relationship between a pocket and groove in family 5 glycosyl hydrolases.
J.Mol.Biol., 294, 1999
6VK2
DownloadVisualize
BU of 6vk2 by Molmil
NMR solution structure of Grb2-SH2 domain at pH 7
Descriptor: Growth factor receptor-bound protein 2
Authors:Sanches, K, Caruso, I.P, Melo, F.A, Almeida, F.C.L.
Deposit date:2020-01-18
Release date:2020-07-29
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:The dynamics of free and phosphopeptide-bound Grb2-SH2 reveals two dynamically independent subdomains and an encounter complex with fuzzy interactions.
Sci Rep, 10, 2020
4H9O
DownloadVisualize
BU of 4h9o by Molmil
Complex structure 2 of DAXX/H3.3(sub5,G90M)/H4
Descriptor: Death domain-associated protein 6, Histone H3.3, Histone H4, ...
Authors:Elsasser, S.J, Huang, H, Lewis, P.W, Chin, J.W, Allis, D.C, Patel, D.J.
Deposit date:2012-09-24
Release date:2012-10-10
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.053 Å)
Cite:DAXX chaperone envelops an H3.3/H4 dimer dictating H3.3-specific read out
To be Published
6BVE
DownloadVisualize
BU of 6bve by Molmil
Triosephosphate isomerase of Synechocystis in complex with 2-Phosphoglycolic acid
Descriptor: 2-PHOSPHOGLYCOLIC ACID, SODIUM ION, Triosephosphate isomerase
Authors:Jimenez-Sandoval, P, Castro-Torres, E, Brieba, L.G.
Deposit date:2017-12-12
Release date:2018-12-19
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Structural Basis for the Limited Response to Oxidative and Thiol-Conjugating Agents by Triosephosphate Isomerase From the Photosynthetic BacteriaSynechocystis.
Front Mol Biosci, 5, 2018
6WCX
DownloadVisualize
BU of 6wcx by Molmil
FphF, Staphylococcus aureus fluorophosphonate-binding serine hydrolases F, substrate bound
Descriptor: Esterase family protein, HEPTAN-1-OL
Authors:Fellner, M, Mace, P.D.
Deposit date:2020-03-31
Release date:2020-09-16
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.89 Å)
Cite:Structural Basis for the Inhibitor and Substrate Specificity of the Unique Fph Serine Hydrolases of Staphylococcus aureus .
Acs Infect Dis., 6, 2020
4MQT
DownloadVisualize
BU of 4mqt by Molmil
Structure of active human M2 muscarinic acetylcholine receptor bound to the agonist iperoxo and allosteric modulator LY2119620
Descriptor: 3-amino-5-chloro-N-cyclopropyl-4-methyl-6-[2-(4-methylpiperazin-1-yl)-2-oxoethoxy]thieno[2,3-b]pyridine-2-carboxamide, 4-(4,5-dihydro-1,2-oxazol-3-yloxy)-N,N,N-trimethylbut-2-yn-1-aminium, Muscarinic acetylcholine receptor M2, ...
Authors:Kruse, A.C, Ring, A.M, Manglik, A, Hu, J, Hu, K, Eitel, K, Huebner, H, Pardon, E, Valant, C, Sexton, P.M, Christopoulos, A, Felder, C.C, Gmeiner, P, Steyaert, J, Weis, W.I, Garcia, K.C, Wess, J, Kobilka, B.K.
Deposit date:2013-09-16
Release date:2013-11-27
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (3.7 Å)
Cite:Activation and allosteric modulation of a muscarinic acetylcholine receptor.
Nature, 504, 2013
5FWH
DownloadVisualize
BU of 5fwh by Molmil
N-terminal FHA domain from EssC a component of the bacterial Type VII secretion apparatus
Descriptor: ESSC
Authors:Zoltner, M, Ng, W.M.A.V, Money, J.J, Fyfe, P.K, Kneuper, H, Palmer, T, Hunter, W.N.
Deposit date:2016-02-17
Release date:2016-04-06
Last modified:2016-10-12
Method:X-RAY DIFFRACTION (2.06 Å)
Cite:Essc: Domain Structures Inform on the Elusive Translocation Channel in the Type Vii Secretion System.
Biochem.J., 473, 2016
3CSK
DownloadVisualize
BU of 3csk by Molmil
Structure of DPP III from Saccharomyces cerevisiae
Descriptor: MAGNESIUM ION, Probable dipeptidyl-peptidase 3, ZINC ION
Authors:Baral, P.K, Jajcanin, N, Deller, S, Macheroux, P, Abramic, M, Gruber, K.
Deposit date:2008-04-10
Release date:2008-06-10
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:The first structure of dipeptidyl-peptidase III provides insight into the catalytic mechanism and mode of substrate binding.
J.Biol.Chem., 283, 2008
6NBS
DownloadVisualize
BU of 6nbs by Molmil
WT ERK2 with compound 2507-8
Descriptor: (5S)-5-benzyl-4,5-dihydro-1H-imidazol-2-amine, GLYCEROL, Mitogen-activated protein kinase 1, ...
Authors:Sammons, R.M, Perry, N.A, Cho, E.J, Kaoud, T.S, Zamora-Olivares, D.P, Piserchio, A, Houghten, R.A, Giulianotti, M, Li, Y, Debevec, G, Gurevich, V.V, Ghose, R, Iverson, T.M, Dalby, K.N.
Deposit date:2018-12-10
Release date:2019-07-31
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:A Novel Class of Common Docking Domain Inhibitors That Prevent ERK2 Activation and Substrate Phosphorylation.
Acs Chem.Biol., 14, 2019
3MX0
DownloadVisualize
BU of 3mx0 by Molmil
Crystal Structure of EphA2 ectodomain in complex with ephrin-A5
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Ephrin type-A receptor 2, ...
Authors:Himanen, J.P, Yermekbayeva, L, Janes, P.W, Walker, J.R, Xu, K, Atapattu, L, Rajashankar, K.R, Mensinga, A, Lackmann, M, Nikolov, D.B, Dhe-Paganon, S.
Deposit date:2010-05-06
Release date:2010-06-30
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (3.506 Å)
Cite:Architecture of Eph receptor clusters.
Proc.Natl.Acad.Sci.USA, 107, 2010
3CY5
DownloadVisualize
BU of 3cy5 by Molmil
Crystal structure determination of buffalo (Bubalus bubalis) hemoglobin at 2 angstrom resolution
Descriptor: Hemoglobin subunit alpha-2, Hemoglobin subunit beta, PROTOPORPHYRIN IX CONTAINING FE
Authors:Balasubramanian, M, Sathya Moorthy, P, Neelagandan, K, Ponnuswamy, M.N.
Deposit date:2008-04-25
Release date:2009-04-28
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure determination of hemoglobin from Buffalo (Bubalus bubalis) at 2 angstrom resolution
To be Published

224004

数据于2024-08-21公开中

PDB statisticsPDBj update infoContact PDBjnumon