Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 46375 results

5GOP
DownloadVisualize
BU of 5gop by Molmil
Crystal structure of alkaline invertase InvA from Anabaena sp. PCC 7120 complexed with sucrose
Descriptor: Alkaline Invertase, beta-D-fructofuranose, beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose
Authors:Xie, J, Cai, K, Hu, H.X, Jiang, Y.L, Yang, F, Hu, P.F, Chen, Y, Zhou, C.Z.
Deposit date:2016-07-28
Release date:2016-11-02
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Structural Analysis of the Catalytic Mechanism and Substrate Specificity of Anabaena Alkaline Invertase InvA Reveals a Novel Glucosidase
J. Biol. Chem., 291, 2016
5GZO
DownloadVisualize
BU of 5gzo by Molmil
Structure of neutralizing antibody bound to Zika envelope protein
Descriptor: Antibody heavy chain, Antibody light chain, Genome polyprotein
Authors:Wang, Q, Yang, H, Liu, X, Dai, L, Ma, T, Qi, J, Wong, G, Peng, R, Liu, S, Li, J, Li, S, Song, J, Liu, J, He, J, Yuan, H, Xiong, Y, Liao, Y, Li, J, Yang, J, Tong, Z, Griffin, B, Bi, Y, Liang, M, Xu, X, Cheng, G, Wang, P, Qiu, X, Kobinger, G, Shi, Y, Yan, J, Gao, G.F.
Deposit date:2016-09-29
Release date:2017-01-18
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.755 Å)
Cite:Molecular determinants of human neutralizing antibodies isolated from a patient infected with Zika virus
Sci Transl Med, 8, 2016
5AOO
DownloadVisualize
BU of 5aoo by Molmil
X-ray structure of a human Kobuvirus: Aichi virus A (AiV)
Descriptor: VP0, VP1, VP3
Authors:Sabin, C, Palkova, L, Plevka, P.
Deposit date:2015-09-11
Release date:2016-03-09
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The Use of Noncrystallographic Symmetry Averaging to Solve Structures from Data Affected by Perfect Hemihedral Twinning
Acta Crystallogr.,Sect.F, 72, 2016
6FWO
DownloadVisualize
BU of 6fwo by Molmil
Structure of an E336Q variant of the GH99 endo-alpha-mannanase from Bacteroides xylanisolvens in complex with alpha-Glc-1,3-1,2-anhydro-mannose hydrolyzed by enzyme
Descriptor: (1~{S},2~{R},3~{S},4~{R},5~{R})-5-(hydroxymethyl)cyclohexane-1,2,3,4-tetrol, ACETATE ION, Glycosyl hydrolase family 71, ...
Authors:Sobala, L.F, Speciale, G, Hakki, Z, Fernandes, P.Z, Raich, L, Rojas-Cervellera, V, Bennet, A, Thompson, A.J, Bernardo-Seisdedos, G, Millet, O, Zhu, S, Lu, D, Sollogoub, M, Rovira, C, Jimenez-Barbero, J, Davies, G.J, Williams, S.J.
Deposit date:2018-03-06
Release date:2019-09-18
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.34 Å)
Cite:An Epoxide Intermediate in Glycosidase Catalysis.
Acs Cent.Sci., 6, 2020
6FXW
DownloadVisualize
BU of 6fxw by Molmil
Structure of Leishmania infantum type B ribose 5-phosphate isomerase
Descriptor: Putative ribose 5-phosphate isomerase, SULFATE ION
Authors:Ronin, C, Ciesielski, F, Ciapetti, P.
Deposit date:2018-03-09
Release date:2019-05-22
Last modified:2024-06-12
Method:X-RAY DIFFRACTION (1.57 Å)
Cite:Toward Chemical Validation of Leishmania infantum Ribose 5-Phosphate Isomerase as a Drug Target.
Antimicrob.Agents Chemother., 65, 2021
6FY1
DownloadVisualize
BU of 6fy1 by Molmil
Crystal structure of a V2p-reactive RV144 vaccine-like antibody, CAP228-16H, in complex with a scaffolded autologous V1V2
Descriptor: CAP228 Autologous Scaffolded V1V2, CAP228-16H Heavy Chain, CAP228-16H Light Chain
Authors:Wibmer, C.K, Moore, P.L, Morris, L.
Deposit date:2018-03-10
Release date:2018-10-17
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (3.132 Å)
Cite:Common helical V1V2 conformations of HIV-1 Envelope expose the alpha 4 beta 7 binding site on intact virions.
Nat Commun, 9, 2018
7EMG
DownloadVisualize
BU of 7emg by Molmil
Carbonyl Reductase Variant 4 (R123C/L209P/F183Y/V61K) from Serratia marcescens complexed with NADP+
Descriptor: 1,2-ETHANEDIOL, 3-oxoacyl-[acyl-carrier-protein] reductase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Zheng, Y.C, Wang, T, Bai, Y.P.
Deposit date:2021-04-14
Release date:2021-10-06
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.449 Å)
Cite:Stereoselective synthesis of chiral delta-lactones via an engineered carbonyl reductase.
Chem.Commun.(Camb.), 57, 2021
5GKB
DownloadVisualize
BU of 5gkb by Molmil
Crystal Structure of Fatty Acid-Binding Protein in Brain Tissue of Drosophila melanogaster without citrate inside
Descriptor: Fatty acid bindin protein, isoform B
Authors:Cheng, Y.-Y, Huang, Y.-F, Lin, H.-H, Chang, W.W, Lyu, P.-C.
Deposit date:2016-07-04
Release date:2017-07-05
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.04 Å)
Cite:The ligand-mediated affinity of brain-type fatty acid-binding protein for membranes determines the directionality of lipophilic cargo transport.
Biochim Biophys Acta Mol Cell Biol Lipids, 1864, 2019
5HPQ
DownloadVisualize
BU of 5hpq by Molmil
Crystal structure of cyclohexadienyl dehydratase from Pseudomonas aeruginosa bound to acetate
Descriptor: ACETATE ION, Cyclohexadienyl dehydratase
Authors:Clifton, B.E, Carr, P.D, Jackson, C.J.
Deposit date:2016-01-20
Release date:2017-01-25
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Crystal structure of cyclohexadienyl dehydratase from Pseudomonas aeruginosa bound to acetate
To Be Published
5HCB
DownloadVisualize
BU of 5hcb by Molmil
Globular Domain of the Entamoeba histolytica calreticulin in complex with glucose
Descriptor: CALCIUM ION, CHLORIDE ION, Calreticulin, ...
Authors:Moreau, C.P, Cioci, G, Ianello, M, Laffly, E, Chouquet, A, Ferreira, A, Thielens, N.M, Gaboriaud, C.
Deposit date:2016-01-04
Release date:2016-08-31
Last modified:2017-08-30
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structures of parasite calreticulins provide insights into their flexibility and dual carbohydrate/peptide-binding properties.
IUCrJ, 3, 2016
6FM3
DownloadVisualize
BU of 6fm3 by Molmil
Deoxyguanylosuccinate synthase (DgsS) structure with ADP at 1.9 Angstrom resolution
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Adenylosuccinate synthetase, CHLORIDE ION
Authors:Sleiman, D, Loc'h, J, Haouz, A, Kaminski, P.A.
Deposit date:2018-01-30
Release date:2019-06-12
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Deoxyguanylosuccinate synthase (DgsS) quaternary structure with ATP0, dGMP, Magnesium at 2.3 Angstrom resolution
To Be Published
5EAY
DownloadVisualize
BU of 5eay by Molmil
Crystal structure of a Dna2 peptide in complex with Rpa 70N
Descriptor: DNA replication ATP-dependent helicase/nuclease DNA2, Replication protein A 70 kDa DNA-binding subunit
Authors:Zhou, C, Pourmal, S, Pavletich, N.P.
Deposit date:2015-10-17
Release date:2015-11-18
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Dna2 nuclease-helicase structure, mechanism and regulation by Rpa.
Elife, 4, 2015
6FPB
DownloadVisualize
BU of 6fpb by Molmil
Crystal structure of anti-mTFP1 DARPin 1238_G01 in space group I4
Descriptor: CHLORIDE ION, DARPin 1238_G01
Authors:Jakob, R.P, Vigano, M.A, Bieli, D, Matsuda, S, Schaefer, J.V, Pluckthun, A, Affolter, M, Maier, T.
Deposit date:2018-02-09
Release date:2018-10-03
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.617 Å)
Cite:DARPins recognizing mTFP1 as novel reagents forin vitroandin vivoprotein manipulations.
Biol Open, 7, 2018
5DZA
DownloadVisualize
BU of 5dza by Molmil
Streptococcus agalactiae AgI/II polypeptide BspA C terminal domain (WT)
Descriptor: 1,2-ETHANEDIOL, BspA, DI(HYDROXYETHYL)ETHER
Authors:Rego, S, Till, M, Race, P.R.
Deposit date:2015-09-25
Release date:2016-06-22
Last modified:2024-06-12
Method:X-RAY DIFFRACTION (2.19 Å)
Cite:Structural and Functional Analysis of Cell Wall-anchored Polypeptide Adhesin BspA in Streptococcus agalactiae.
J.Biol.Chem., 291, 2016
6FRL
DownloadVisualize
BU of 6frl by Molmil
BrvH, a flavin-dependent halogenase from Brevundimonas sp. BAL3
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, GLYCEROL, L(+)-TARTARIC ACID, ...
Authors:Widmann, C, Neubauer, P.R, Sewald, N, Niemann, H.H.
Deposit date:2018-02-16
Release date:2018-05-23
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:A flavin-dependent halogenase from metagenomic analysis prefers bromination over chlorination.
PLoS ONE, 13, 2018
7DST
DownloadVisualize
BU of 7dst by Molmil
FMDV capsid in complex with M170 Nab
Descriptor: M170 Nab, VP1 of O type FMDV capsid, VP2 of O type FMDV capsid, ...
Authors:Dong, H, Liu, P.
Deposit date:2021-01-02
Release date:2021-03-10
Last modified:2022-05-25
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Structural and molecular basis for foot-and-mouth disease virus neutralization by two potent protective antibodies.
Protein Cell, 13, 2022
5DP9
DownloadVisualize
BU of 5dp9 by Molmil
Crystal Structure of EV71 3C Proteinase in complex with compound 9
Descriptor: 3C proteinase, ethyl (2Z,4S)-4-[(N-{[(cyclobutylmethyl)amino](oxo)acetyl}-L-phenylalanyl)amino]-5-[(3S)-2-oxopyrrolidin-3-yl]pent-2-enoate
Authors:Wu, C, Zhang, L, Li, P, Cai, Q, Peng, X, Li, N, Cai, Y, Li, J, Lin, T.
Deposit date:2015-09-12
Release date:2016-03-30
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Fragment-wise design of inhibitors to 3C proteinase from enterovirus 71
Biochim.Biophys.Acta, 1860, 2016
6G5R
DownloadVisualize
BU of 6g5r by Molmil
Structure of the UB2H domain of E.coli PBP1B in complex with LpoB
Descriptor: Penicillin-binding protein 1B
Authors:Simorre, J.P, Maya Martinez, R.C, Bougault, C.
Deposit date:2018-03-29
Release date:2019-02-20
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:Induced conformational changes activate the peptidoglycan synthase PBP1B.
Mol. Microbiol., 110, 2018
5DP8
DownloadVisualize
BU of 5dp8 by Molmil
Crystal Structure of EV71 3C Proteinase in complex with compound 8
Descriptor: 3C proteinase, ethyl (2Z,4S)-4-[(N-{[(2-cyclopropylethyl)amino](oxo)acetyl}-L-phenylalanyl)amino]-5-[(3S)-2-oxopyrrolidin-3-yl]pent-2-enoate
Authors:Wu, C, Zhang, L, Li, P, Cai, Q, Peng, X, Li, N, Cai, Y, Li, J, Lin, T.
Deposit date:2015-09-12
Release date:2016-03-30
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Fragment-wise design of inhibitors to 3C proteinase from enterovirus 71
Biochim.Biophys.Acta, 1860, 2016
5DPA
DownloadVisualize
BU of 5dpa by Molmil
Crystal Structure of EV71 3C Proteinase in complex with compound 6
Descriptor: 3C proteinase, ethyl (2Z,4S)-4-[(N-acetyl-L-phenylalanyl)amino]-5-[(3S)-2-oxopyrrolidin-3-yl]pent-2-enoate
Authors:Wu, C, Zhang, L, Li, P, Cai, Q, Peng, X, Li, N, Cai, Y, Li, J, Lin, T.
Deposit date:2015-09-12
Release date:2016-03-30
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.06 Å)
Cite:Fragment-wise design of inhibitors to 3C proteinase from enterovirus 71
Biochim.Biophys.Acta, 1860, 2016
5BYO
DownloadVisualize
BU of 5byo by Molmil
Computationally designed left-handed alpha/alpha toroid with 12 repeats
Descriptor: dTor_12x31L
Authors:Doyle, L, Stoddard, B.L, Bradley, P.
Deposit date:2015-06-10
Release date:2015-12-16
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.503 Å)
Cite:Rational design of alpha-helical tandem repeat proteins with closed architectures.
Nature, 528, 2015
5GVQ
DownloadVisualize
BU of 5gvq by Molmil
Solution structure of the first RRM domain of human spliceosomal protein SF3b49
Descriptor: Splicing factor 3B subunit 4
Authors:Kuwasako, K, Nameki, N, Tsuda, K, Takahashi, M, Sato, A, Tochio, N, Inoue, M, Terada, T, Kigawa, T, Kobayashi, N, Shirouzu, M, Ito, T, Sakamoto, T, Wakamatsu, K, Guntert, P, Takahashi, S, Yokoyama, S, Muto, Y, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2016-09-06
Release date:2017-04-12
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Solution structure of the first RNA recognition motif domain of human spliceosomal protein SF3b49 and its mode of interaction with a SF3b145 fragment.
Protein Sci., 26, 2017
5FB6
DownloadVisualize
BU of 5fb6 by Molmil
Room-temperature macromolecular crystallography using a micro-patterned silicon chip with minimal background scattering
Descriptor: Insulin Chain A, Insulin Chain B
Authors:Roedig, P, Duman, R, Sanchez-Weatherby, J, Vartiainen, I, Burkhardt, A, Warmer, M, David, C, Wagner, A, Meents, A.
Deposit date:2015-12-14
Release date:2016-06-15
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.901 Å)
Cite:Room-temperature macromolecular crystallography using a micro-patterned silicon chip with minimal background scattering.
J.Appl.Crystallogr., 49, 2016
5BY7
DownloadVisualize
BU of 5by7 by Molmil
AbyA1 - tetronic acid condensing enzyme
Descriptor: 3-oxoacyl-ACP synthase III
Authors:Byrne, M.J, Race, P.R.
Deposit date:2015-06-10
Release date:2016-06-29
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The structure of AbyA1, a tetronic acid condensing enzyme from the Abyssomicin polyketide synthase.
To Be Published
5C1Y
DownloadVisualize
BU of 5c1y by Molmil
Crystal structure of EV71 3C Proteinase in complex with Compound 1
Descriptor: 3C proteinase, propan-2-yl N-[(2S)-1-oxidanylidene-1-[[(2S)-1-oxidanyl-3-[(3S)-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]-3-phenyl-propan-2-yl]carbamate
Authors:Zhang, L, Huang, G, Cai, Q, Zhao, C, Ren, H, Li, P, Li, N, Chen, S, Li, J, Lin, T.
Deposit date:2015-06-15
Release date:2016-06-01
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:Optimize the interactions at S4 with efficient inhibitors targeting 3C proteinase from enterovirus 71
J.Mol.Recognit., 29, 2016

226262

数据于2024-10-16公开中

PDB statisticsPDBj update infoContact PDBjnumon