Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 45955 results

2IGG
DownloadVisualize
BU of 2igg by Molmil
DETERMINATION OF THE SOLUTION STRUCTURES OF DOMAINS II AND III OF PROTEIN G FROM STREPTOCOCCUS BY 1H NMR
Descriptor: PROTEIN G
Authors:Lian, L.-Y, Derrick, J.P, Sutcliffe, M.J, Yang, J.C, Roberts, G.C.K.
Deposit date:1992-08-26
Release date:1994-01-31
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Determination of the solution structures of domains II and III of protein G from Streptococcus by 1H nuclear magnetic resonance.
J.Mol.Biol., 228, 1992
5F5P
DownloadVisualize
BU of 5f5p by Molmil
Molecular Basis for Shroom2 Recognition by Rock1
Descriptor: CHLORIDE ION, Protein Shroom2, Rho-associated protein kinase 1
Authors:Zalewski, J.K, VanDemark, A.P, Heroux, A.
Deposit date:2015-12-04
Release date:2016-10-19
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (3.568 Å)
Cite:Structure of the Shroom-Rho Kinase Complex Reveals a Binding Interface with Monomeric Shroom That Regulates Cell Morphology and Stimulates Kinase Activity.
J. Biol. Chem., 291, 2016
3CFX
DownloadVisualize
BU of 3cfx by Molmil
Crystal structure of M. acetivorans periplasmic binding protein ModA/WtpA with bound tungstate
Descriptor: GLYCEROL, MAGNESIUM ION, TUNGSTATE(VI)ION, ...
Authors:Comellas-Bigler, M, Hollenstein, K, Locher, K.P.
Deposit date:2008-03-04
Release date:2009-03-10
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Distorted octahedral coordination of tungstate in a subfamily of specific binding proteins.
J.Biol.Inorg.Chem., 14, 2009
6BC4
DownloadVisualize
BU of 6bc4 by Molmil
Cryo X-ray structure of acetyl coenzyme A bound AAC-VIa
Descriptor: AAC 3-VI protein, ACETYL COENZYME *A
Authors:Cuneo, M.J, Kumar, P, Serpersu, E.H.
Deposit date:2017-10-20
Release date:2018-02-28
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.049 Å)
Cite:A low-barrier hydrogen bond mediates antibiotic resistance in a noncanonical catalytic triad.
Sci Adv, 4, 2018
5WF1
DownloadVisualize
BU of 5wf1 by Molmil
Tepsin VHS/ENTHlike domain SeMet
Descriptor: Uncharacterized protein
Authors:Frazier, M.N, Monken, A.E, Jackson, L.P.
Deposit date:2017-07-11
Release date:2017-07-26
Last modified:2020-01-01
Method:X-RAY DIFFRACTION (1.954 Å)
Cite:Structure and evolution of ENTH and VHS/ENTH-like domains in tepsin.
Traffic, 18, 2017
5WF9
DownloadVisualize
BU of 5wf9 by Molmil
Tepsin tENTH domain 1-153
Descriptor: AP-4 complex accessory subunit Tepsin
Authors:Archuleta, T.L, Jackson, L.P.
Deposit date:2017-07-11
Release date:2017-08-02
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure and evolution of ENTH and VHS/ENTH-like domains in tepsin.
Traffic, 18, 2017
6BCB
DownloadVisualize
BU of 6bcb by Molmil
A Complex between PH Domain of p114RhoGEF and Activated RhoA Bound to a GTP Analog
Descriptor: 1,2-ETHANEDIOL, 5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE, MAGNESIUM ION, ...
Authors:Sternweis, P.C, Chen, Z.
Deposit date:2017-10-20
Release date:2017-12-13
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.401 Å)
Cite:Crystal structures of the PH domains from Lbc family of RhoGEFs bound to activated RhoA GTPase.
Data Brief, 17, 2018
3R86
DownloadVisualize
BU of 3r86 by Molmil
Crystal structure of d(CCGGTACCGG)2 as B-DNA duplex grown with 5 mM CoCl2
Descriptor: COBALT (II) ION, DNA (5'-D(*CP*CP*GP*GP*TP*AP*CP*CP*GP*G)-3')
Authors:Venkadesh, S, Mandal, P.K, Gautham, N.
Deposit date:2011-03-23
Release date:2011-04-06
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structure of d(CCGGTACCGG)2 as B-DNA duplex
To be Published
6ETW
DownloadVisualize
BU of 6etw by Molmil
Crystal structure of KDM4D with tetrazolhydrazide compound 3
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, GLYCEROL, ...
Authors:Malecki, P.H, Link, A, Weiss, M.S, Heinemann, U.
Deposit date:2017-10-27
Release date:2019-02-20
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Structure-Based Screening of Tetrazolylhydrazide Inhibitors versus KDM4 Histone Demethylases.
Chemmedchem, 14, 2019
2V6K
DownloadVisualize
BU of 2v6k by Molmil
Structure of Maleyl Pyruvate Isomerase, a bacterial glutathione-s- transferase in Zeta class, in complex with substrate analogue dicarboxyethyl glutathione
Descriptor: ACETATE ION, GAMMA-GLUTAMYL-S-(1,2-DICARBOXYETHYL)CYSTEINYLGLYCINE, MALEYLPYRUVATE ISOMERASE, ...
Authors:Shoemark, D.K, Zhou, N.-Y, Williams, P.A, Hadfield, A.T.
Deposit date:2007-07-19
Release date:2008-07-22
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Structure of Bacterial Glutathione-S-Transferase Maleyl Pyruvate Isomerase and Implications for Mechanism of Isomerisation.
J.Mol.Biol., 384, 2008
8ACL
DownloadVisualize
BU of 8acl by Molmil
Crystal structure of SARS-CoV-2 main protease (MPro) in complex with the non-covalent inhibitor GC-14
Descriptor: (2~{S})-1-(3,4-dichlorophenyl)-4-pyridin-3-ylcarbonyl-~{N}-(thiophen-2-ylmethyl)piperazine-2-carboxamide, 3C-like proteinase nsp5
Authors:Strater, N, Muller, C, Sylvester, K, Claff, T, Weisse, R.H, Gao, S, Tollefson, A.E, Liu, X, Zhan, P.
Deposit date:2022-07-05
Release date:2022-09-28
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Discovery and Crystallographic Studies of Trisubstituted Piperazine Derivatives as Non-Covalent SARS-CoV-2 Main Protease Inhibitors with High Target Specificity and Low Toxicity.
J.Med.Chem., 65, 2022
2J7V
DownloadVisualize
BU of 2j7v by Molmil
Structure of PBP-A
Descriptor: TLL2115 PROTEIN
Authors:Evrard, C, Declercq, J.P.
Deposit date:2006-10-17
Release date:2007-11-06
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure of Pbp-A from Thermosynechococcus Elongatus, a Penicillin-Binding Protein Closely Related to Class a Beta-Lactamases.
J.Mol.Biol., 386, 2009
6J9N
DownloadVisualize
BU of 6j9n by Molmil
NmeHNH+AcrIIC3
Descriptor: AcrIIC3, CRISPR-associated endonuclease Cas9
Authors:Zhu, Y.L, Gao, A, Serganov, A, Gao, P.
Deposit date:2019-01-23
Release date:2019-03-06
Last modified:2022-03-23
Method:X-RAY DIFFRACTION (2.606 Å)
Cite:Diverse Mechanisms of CRISPR-Cas9 Inhibition by Type IIC Anti-CRISPR Proteins.
Mol. Cell, 74, 2019
8ACD
DownloadVisualize
BU of 8acd by Molmil
Crystal structure of SARS-CoV-2 main protease (MPro) in complex with the non-covalent inhibitor GA-17S
Descriptor: (2~{S})-4-[[2,4-bis(oxidanylidene)-1~{H}-pyrimidin-6-yl]carbonyl]-1-(3,4-dichlorophenyl)-~{N}-(thiophen-2-ylmethyl)piperazine-2-carboxamide, 3C-like proteinase nsp5
Authors:Strater, N, Muller, C.E, Sylvester, K, Claff, T, Weisse, R.H, Gao, S, Tollefson, A.E, Liu, X, Zhan, P.
Deposit date:2022-07-05
Release date:2022-09-28
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.39 Å)
Cite:Discovery and Crystallographic Studies of Trisubstituted Piperazine Derivatives as Non-Covalent SARS-CoV-2 Main Protease Inhibitors with High Target Specificity and Low Toxicity.
J.Med.Chem., 65, 2022
5F7Y
DownloadVisualize
BU of 5f7y by Molmil
Blood group antigen binding adhesin BabA of Helicobacter pylori strain 17875 in complex with blood group A type-1 hexasaccharide
Descriptor: Adhesin binding fucosylated histo-blood group antigen, Nanobody Nb-ER19, alpha-L-fucopyranose-(1-2)-[2-acetamido-2-deoxy-alpha-D-galactopyranose-(1-3)]beta-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-beta-D-galactopyranose-(1-4)-alpha-D-glucopyranose
Authors:Moonens, K, Gideonsson, P, Subedi, S, Romao, E, Oscarson, S, Muyldermans, S, Boren, T, Remaut, H.
Deposit date:2015-12-08
Release date:2016-01-20
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.44 Å)
Cite:Structural Insights into Polymorphic ABO Glycan Binding by Helicobacter pylori.
Cell Host Microbe, 19, 2016
6JCU
DownloadVisualize
BU of 6jcu by Molmil
Crystal structure of an actin monomer in complex with a nucleator Cordon-Bleu WH2-motif peptide mutant. T22V, H11R
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Actin, alpha skeletal muscle, ...
Authors:Scipion, C.P.M, Robinson, R.C.
Deposit date:2019-01-30
Release date:2020-02-05
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.297 Å)
Cite:Design of an actin-severing peptide.
To Be Published
6EYB
DownloadVisualize
BU of 6eyb by Molmil
Estimation of relative drug-target residence times by random acceleration molecular dynamics simulation
Descriptor: 3-(phenylmethyl)-5-(2-phenylpyrazol-3-yl)-2~{H}-indazol-6-ol, Heat shock protein HSP 90-alpha, SULFATE ION
Authors:Musil, D, Lehmann, M, Buchstaller, H.-P.
Deposit date:2017-11-11
Release date:2018-05-30
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Estimation of Drug-Target Residence Times by tau-Random Acceleration Molecular Dynamics Simulations.
J Chem Theory Comput, 14, 2018
6AXP
DownloadVisualize
BU of 6axp by Molmil
Structure of cetuximab with aminoheptanoic acid-linked n-octylarginine meditope variant
Descriptor: SULFATE ION, cetuximab Fab heavy chain, cetuximab Fab light chain, ...
Authors:Bzymek, K.P, Williams, J.C.
Deposit date:2017-09-07
Release date:2017-12-13
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.484 Å)
Cite:Meditope-Fab interaction: threading the hole.
Acta Crystallogr F Struct Biol Commun, 73, 2017
5W7V
DownloadVisualize
BU of 5w7v by Molmil
CryoEM structure of the segment, DLIIKGISVHI, assembled into a triple-helical fibril
Descriptor: TAR DNA-binding protein 43
Authors:Guenther, E.L, Ge, P, Eisenberg, D.S.
Deposit date:2017-06-20
Release date:2018-03-14
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Atomic-level evidence for packing and positional amyloid polymorphism by segment from TDP-43 RRM2.
Nat. Struct. Mol. Biol., 25, 2018
5W80
DownloadVisualize
BU of 5w80 by Molmil
Toxoplasma Gondii CDPK1 in complex with inhibitor GXJ-237
Descriptor: 3-(3-chlorophenoxy)-1-[(piperidin-4-yl)methyl]-1H-pyrazolo[3,4-d]pyrimidin-4-amine, CALCIUM ION, Calmodulin-domain protein kinase 1
Authors:El Bakkouri, M, Lovato, D, Loppnau, P, Lin, Y.H, Rutaganaria, F, Lopez, M.S, Shokat, L, Bountra, C, Edwards, A.M, Arrowsmith, C.H, Sibley, D, Walker, J.R, Structural Genomics Consortium (SGC)
Deposit date:2017-06-21
Release date:2017-07-19
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2 Å)
Cite:Toxoplasma Gondii CDPK1 in complex with inhibitor GXJ-237
To be published
5W98
DownloadVisualize
BU of 5w98 by Molmil
Pyridine synthase, PbtD, from GE2270 biosynthesis
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, PbtD
Authors:Cogan, D.P, Nair, S.K.
Deposit date:2017-06-22
Release date:2017-11-22
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.23 Å)
Cite:Structural insights into enzymatic [4+2] aza-cycloaddition in thiopeptide antibiotic biosynthesis.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
6AZM
DownloadVisualize
BU of 6azm by Molmil
Crystal structure of the 580 germline antibody bound to circumsporozoite protein NANP 5-mer
Descriptor: 580 germline antibody, heavy chain, light chain, ...
Authors:Scally, S.W, Bosch, A, Triller, G, Wardemann, H, Julien, J.P.
Deposit date:2017-09-11
Release date:2017-12-13
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Natural Parasite Exposure Induces Protective Human Anti-Malarial Antibodies.
Immunity, 47, 2017
1SHR
DownloadVisualize
BU of 1shr by Molmil
Crystal structure of ferrocyanide bound human hemoglobin A2 at 1.88A resolution
Descriptor: CYANIDE ION, FE (III) ION, Hemoglobin alpha chain, ...
Authors:Sen, U, Dasgupta, J, Choudhury, D, Datta, P, Chakrabarti, A, Chakrabarty, S.B, Chakrabarty, A, Dattagupta, J.K.
Deposit date:2004-02-26
Release date:2004-10-26
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:Crystal structures of HbA2 and HbE and modeling of hemoglobin delta4: interpretation of the thermal stability and the antisickling effect of HbA2 and identification of the ferrocyanide binding site in Hb
Biochemistry, 43, 2004
6FGS
DownloadVisualize
BU of 6fgs by Molmil
Solution structure of p300Taz2-p73TA1
Descriptor: Histone acetyltransferase p300,Tumor protein p73, ZINC ION
Authors:Gebel, J, Kazemi, S, Lohr, F, Guntert, P, Dotsch, V.
Deposit date:2018-01-11
Release date:2018-05-30
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:Regulation of the Activity in the p53 Family Depends on the Organization of the Transactivation Domain.
Structure, 26, 2018
5TK3
DownloadVisualize
BU of 5tk3 by Molmil
Crystal structure of FBP aldolase from Toxoplasma gondii, burst-phase ternary complex
Descriptor: 1,3-DIHYDROXYACETONEPHOSPHATE, Fructose-bisphosphate aldolase, GLYCERALDEHYDE-3-PHOSPHATE, ...
Authors:Heron, P.W, Sygusch, J.
Deposit date:2016-10-06
Release date:2017-10-04
Last modified:2020-01-08
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:Isomer activation controls stereospecificity of class I fructose-1,6-bisphosphate aldolases.
J. Biol. Chem., 292, 2017

224004

数据于2024-08-21公开中

PDB statisticsPDBj update infoContact PDBjnumon