Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 45712 件

8EK9
DownloadVisualize
BU of 8ek9 by Molmil
Crystal structure of the class A carbapenemase CRH-1 in complex with avibactam at 1.4 Angstrom resolution
分子名称: (2S,5R)-1-formyl-5-[(sulfooxy)amino]piperidine-2-carboxamide, Beta-lactamase
著者Power, P, Brunetti, F, Ghiglione, B, Guardabassi, L, Gutkind, G, Klinke, S.
登録日2022-09-20
公開日2023-05-31
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Biochemical and Structural Characterization of CRH-1, a Carbapenemase from Chromobacterium haemolyticum Related to KPC beta-Lactamases.
Antimicrob.Agents Chemother., 67, 2023
6S0A
DownloadVisualize
BU of 6s0a by Molmil
Crystal Structure of Properdin (TSR domains N12 & 456)
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Properdin, alpha-D-mannopyranose, ...
著者van den Bos, R.M, Pearce, N.M, Gros, P.
登録日2019-06-14
公開日2019-09-04
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (2.52 Å)
主引用文献Insights Into Enhanced Complement Activation by Structures of Properdin and Its Complex With the C-Terminal Domain of C3b.
Front Immunol, 10, 2019
6RND
DownloadVisualize
BU of 6rnd by Molmil
Liquid Application Method for time-resolved Analyses (LAMA) by serial synchrotron crystallography, Xylose Isomerase 15 ms timepoint
分子名称: MAGNESIUM ION, Xylose isomerase, alpha-D-glucopyranose
著者Mehrabi, P, Schulz, E.C, Miller, R.J.D.
登録日2019-05-08
公開日2019-10-02
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Liquid application method for time-resolved analyses by serial synchrotron crystallography.
Nat.Methods, 16, 2019
7WME
DownloadVisualize
BU of 7wme by Molmil
Crystal Structure of the catalytic domain of At-HIGLE
分子名称: CALCIUM ION, Structure-specific endonuclease subunit SLX1 homolog
著者Verma, P, Kumari, P, Negi, S, Yadav, G, Gaur, V.
登録日2022-01-14
公開日2022-04-13
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Holliday junction resolution by At-HIGLE: an SLX1 lineage endonuclease from Arabidopsis thaliana with a novel in-built regulatory mechanism.
Nucleic Acids Res., 50, 2022
8EHU
DownloadVisualize
BU of 8ehu by Molmil
Crystal structure of the environmental CRH-1 class A carbapenemase at 1.1 Angstrom resolution
分子名称: Beta-lactamase
著者Power, P, Brunetti, F, Ghiglione, B, Guardabassi, L, Gutkind, G, Klinke, S.
登録日2022-09-14
公開日2023-05-31
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.1 Å)
主引用文献Biochemical and Structural Characterization of CRH-1, a Carbapenemase from Chromobacterium haemolyticum Related to KPC beta-Lactamases.
Antimicrob.Agents Chemother., 67, 2023
5EHH
DownloadVisualize
BU of 5ehh by Molmil
Structure of human DPP3 in complex with endomorphin-2.
分子名称: Dipeptidyl peptidase 3, Endomorphin-2, MAGNESIUM ION, ...
著者Kumar, P, Reithofer, V, Reisinger, M, Pavkov-Keller, T, Wallner, S, Macheroux, P, Gruber, K.
登録日2015-10-28
公開日2016-04-13
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.38 Å)
主引用文献Substrate complexes of human dipeptidyl peptidase III reveal the mechanism of enzyme inhibition.
Sci Rep, 6, 2016
5EIA
DownloadVisualize
BU of 5eia by Molmil
mACHE-anti TZ2PA5 complex from a 1:6 mixture of the syn/anti isomers
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 6-phenyl-5-[5-[1-[2-(1,2,3,4-tetrahydroacridin-9-ylamino)ethyl]-1,2,3-triazol-4-yl]pentyl]phenanthridin-5-ium-3,8-diamine, Acetylcholinesterase, ...
著者Bourne, Y, Marchot, P.
登録日2015-10-29
公開日2016-01-20
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Steric and Dynamic Parameters Influencing In Situ Cycloadditions to Form Triazole Inhibitors with Crystalline Acetylcholinesterase.
J.Am.Chem.Soc., 138, 2016
6S0U
DownloadVisualize
BU of 6s0u by Molmil
The crystal structure of kanamycin B dioxygenase (KanJ) from Streptomyces kanamyceticus in complex with nickel and 2-oxoglutarate
分子名称: 2-OXOGLUTARIC ACID, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ...
著者Mrugala, B, Porebski, P.J, Niedzialkowska, E, Minor, W, Borowski, T.
登録日2019-06-18
公開日2020-07-08
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献A study on the structure, mechanism, and biochemistry of kanamycin B dioxygenase (KanJ)-an enzyme with a broad range of substrates.
Febs J., 288, 2021
5IC4
DownloadVisualize
BU of 5ic4 by Molmil
Crystal structure of caspase-3 DEVE peptide complex
分子名称: Caspase-3 subunit p12, Caspase-3 subunit p17, DEVE peptide
著者Seaman, J.E, Julien, O, Lee, P.S, Rettenmaier, T.J, Thomsen, N.D, Wells, J.A.
登録日2016-02-22
公開日2016-07-20
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.65 Å)
主引用文献Cacidases: caspases can cleave after aspartate, glutamate and phosphoserine residues.
Cell Death Differ., 23, 2016
7JFL
DownloadVisualize
BU of 7jfl by Molmil
Crystal structure of human phosphorylated IRF-3 bound to CBP
分子名称: CREB-binding protein, Interferon regulatory factor 3
著者Li, P, Jing, T, Zhao, B.
登録日2020-07-17
公開日2020-09-09
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.68 Å)
主引用文献The Structural Basis of IRF-3 Activation upon Phosphorylation.
J Immunol., 205, 2020
6S3F
DownloadVisualize
BU of 6s3f by Molmil
Moringa seed protein Mo-CBP3-4
分子名称: 2S albumin, CHLORIDE ION, FORMIC ACID, ...
著者Moulin, M, Mossou, E, Mitchell, E.P, Haertlein, M, Forsyth, V.T, Rennie, A.R.
登録日2019-06-25
公開日2019-07-24
実験手法X-RAY DIFFRACTION (1.68 Å)
主引用文献Towards a molecular understanding of the water purification properties of Moringa seed proteins.
J Colloid Interface Sci, 554, 2019
5UYX
DownloadVisualize
BU of 5uyx by Molmil
Structure of Human T-complex protein 1 subunit epsilon (CCT5)
分子名称: ADENOSINE-5'-DIPHOSPHATE, T-complex protein 1 subunit epsilon
著者Pereira, J.H, McAndrew, R.P, Sergeeva, O.A, Ralston, C.Y, King, J.A, Adams, P.D.
登録日2017-02-24
公開日2017-07-05
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (3.5 Å)
主引用文献Structure of the human TRiC/CCT Subunit 5 associated with hereditary sensory neuropathy.
Sci Rep, 7, 2017
6RSH
DownloadVisualize
BU of 6rsh by Molmil
Structure based optimization of JAK1-ATP binding pocket Inhibitors in the aminopyrazole class
分子名称: 1-[(3~{R},4~{R})-4-(cyanomethyl)-3-fluoranyl-1-[(4-phenylphenyl)methyl]piperidin-4-yl]-3-(cyclopropylcarbonylamino)pyrazole-4-carboxamide, Tyrosine-protein kinase JAK1
著者Brown, D.G, Lupardus, P.J.
登録日2019-05-21
公開日2020-07-08
実験手法X-RAY DIFFRACTION (1.71 Å)
主引用文献Structure based optimization of JAK1-ATP binding pocket Inhibitors in the aminopyrazole class
To Be Published
3OL7
DownloadVisualize
BU of 3ol7 by Molmil
Poliovirus polymerase elongation complex with CTP
分子名称: DI(HYDROXYETHYL)ETHER, GLYCEROL, ISOPROPYL ALCOHOL, ...
著者Gong, P, Peersen, O.B.
登録日2010-08-25
公開日2010-12-22
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Structural basis for active site closure by the poliovirus RNA-dependent RNA polymerase.
Proc.Natl.Acad.Sci.USA, 107, 2010
1HEO
DownloadVisualize
BU of 1heo by Molmil
STRUCTURAL AND THERMODYNAMIC ANALYSIS OF COMPENSATING MUTATIONS WITHIN THE CORE OF CHICKEN EGG WHITE LYSOZYME
分子名称: HEN EGG WHITE LYSOZYME
著者Wilson, K.P, Malcolm, B.A, Matthews, B.W.
登録日1992-01-10
公開日1993-10-31
最終更新日2021-06-30
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structural and thermodynamic analysis of compensating mutations within the core of chicken egg white lysozyme.
J.Biol.Chem., 267, 1992
1POE
DownloadVisualize
BU of 1poe by Molmil
STRUCTURES OF FREE AND INHIBITED HUMAN SECRETORY PHOSPHOLIPASE A2 FROM INFLAMMATORY EXUDATE
分子名称: 1-O-OCTYL-2-HEPTYLPHOSPHONYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE, CALCIUM ION, PHOSPHOLIPASE A2
著者Scott, D.L, White, S.P, Sigler, P.B.
登録日1992-09-07
公開日1993-10-31
最終更新日2024-06-05
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structures of free and inhibited human secretory phospholipase A2 from inflammatory exudate.
Science, 254, 1991
5NP4
DownloadVisualize
BU of 5np4 by Molmil
Beta domain of human transcobalamin bound to cyanocobalamin
分子名称: CYANOCOBALAMIN, GLYCEROL, Transcobalamin-2
著者Bloch, J.S, Locher, K.P.
登録日2017-04-13
公開日2017-09-27
最終更新日2024-06-19
実験手法X-RAY DIFFRACTION (1.434 Å)
主引用文献Structure of the human transcobalamin beta domain in four distinct states.
PLoS ONE, 12, 2017
1H61
DownloadVisualize
BU of 1h61 by Molmil
Structure of Pentaerythritol Tetranitrate Reductase in complex with prednisone
分子名称: 17,21-DIHYDROXYPREGNA-1,4-DIENE-3,11,20-TRIONE, FLAVIN MONONUCLEOTIDE, PENTAERYTHRITOL TETRANITRATE REDUCTASE
著者Barna, T.M, Moody, P.C.E.
登録日2001-06-04
公開日2001-07-05
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Crystal Structure of Pentaerythritol Tetranitrate Reductase: "Flipped" Binding Geometries for Steroid Substrates in Different Redox States of the Enzyme
J.Mol.Biol., 310, 2001
8HQQ
DownloadVisualize
BU of 8hqq by Molmil
Crystal structure of the glucose-binding protein SAR11_0769 from "Candidatus Pelagibacter ubique" HTCC1062 bound to glucose
分子名称: Probable binding protein component of ABC sugar transporter, beta-D-glucopyranose
著者Clifton, B.E, Laurino, P.
登録日2022-12-14
公開日2023-12-27
実験手法X-RAY DIFFRACTION (1.86 Å)
主引用文献Crystal structure of the glucose-binding protein SAR11_0769 from "Candidatus Pelagibacter ubique" HTCC1062 bound to glucose
To Be Published
8HQR
DownloadVisualize
BU of 8hqr by Molmil
Crystal structure of the arginine-/lysine-binding protein SAR11_1210 from 'Candidatus Pelagibacter ubique' HTCC1062 bound to arginine
分子名称: ABC transporter, ARGININE
著者Clifton, B.E, Laurino, P.
登録日2022-12-14
公開日2023-12-27
実験手法X-RAY DIFFRACTION (1.32 Å)
主引用文献Crystal structure of the arginine-/lysine-binding protein SAR11_1210 from 'Candidatus Pelagibacter ubique' HTCC1062 bound to arginine
To Be Published
2VFE
DownloadVisualize
BU of 2vfe by Molmil
Crystal structure of F96S mutant of Plasmodium falciparum triosephosphate isomerase with 3- phosphoglycerate bound at the dimer interface
分子名称: 3-PHOSPHOGLYCERIC ACID, GLYCEROL, TRIOSEPHOSPHATE ISOMERASE
著者Gayathri, P, Banerjee, M, Vijayalakshmi, A, Balaram, H, Balaram, P, Murthy, M.R.N.
登録日2007-11-03
公開日2008-12-09
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Biochemical and Structural Characterization of Residue 96 Mutants of Plasmodium Falciparum Triosephosphate Isomerase: Active-Site Loop Conformation, Hydration and Identification of a Dimer-Interface Ligand-Binding Site.
Acta Crystallogr.,Sect.D, 65, 2009
3L29
DownloadVisualize
BU of 3l29 by Molmil
Crystal Structure of Zaire Ebola VP35 interferon inhibitory domain K319A/R322A mutant
分子名称: CHLORIDE ION, Polymerase cofactor VP35
著者Leung, D.W, Ramanan, P, Borek, D.M, Amarasinghe, G.K.
登録日2009-12-14
公開日2010-02-02
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Mutations abrogating VP35 interaction with double-stranded RNA render ebola virus avirulent in guinea pigs.
J.Virol., 84, 2010
5GZP
DownloadVisualize
BU of 5gzp by Molmil
Y74COX MUTANT OF PLASMODIUM FALCIPARUM TRIOSEPHOSPHATE ISOMERASE
分子名称: 1,2-ETHANEDIOL, 2-PHOSPHOGLYCOLIC ACID, Triosephosphate isomerase
著者Pareek, V, Balaram, P, Murthy, M.R.N.
登録日2016-09-30
公開日2017-10-04
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.03 Å)
主引用文献Y74COX MUTANT OF PLASMODIUM FALCIPARUM TRIOSEPHOSPHATE ISOMERASE
To Be Published
1Y8L
DownloadVisualize
BU of 1y8l by Molmil
Crystal structure of the A-DNA GCGTAT*CGC with a 2'-O-[2-(trifluoro)ethyl] Thymidine (T*)
分子名称: 5'-D(*GP*CP*GP*TP*AP*(TFE)P*AP*CP*GP*C)-3'), MAGNESIUM ION, SPERMINE
著者Egli, M, Minasov, G, Tereshko, V, Pallan, P.S, Teplova, M, Inamati, G.B, Lesnik, E.A, Owens, S.R, Ross, B.S, Prakash, T.P, Manoharan, M.
登録日2004-12-13
公開日2005-06-28
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Probing the Influence of Stereoelectronic Effects on the Biophysical Properties of Oligonucleotides: Comprehensive Analysis of the RNA Affinity, Nuclease Resistance, and Crystal Structure of Ten 2'-O-Ribonucleic Acid Modifications.
Biochemistry, 44, 2005
6FY3
DownloadVisualize
BU of 6fy3 by Molmil
Crystal structure of a V2-directed, RV144 vaccine-like antibody from HIV-1 infection, CAP228-3D, bound to a heterologous V2 peptide
分子名称: CAP228-3D Heavy Chain, CAP228-3D Light Chain, CAP45 V2 peptide
著者Wibmer, C.K, Moore, P.L, Morris, L.
登録日2018-03-10
公開日2018-09-05
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Common helical V1V2 conformations of HIV-1 Envelope expose the alpha 4 beta 7 binding site on intact virions.
Nat Commun, 9, 2018

222624

件を2024-07-17に公開中

PDB statisticsPDBj update infoContact PDBjnumon