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PDB: 45788 件

8ASL
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RCII/PSI complex, class 2
分子名称: (1R,2S)-4-{(1E,3E,5E,7E,9E,11E,13E,15E,17E)-18-[(4S)-4-hydroxy-2,6,6-trimethylcyclohex-1-en-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaen-1-yl}-2,5,5-trimethylcyclohex-3-en-1-ol, (3'R)-3'-hydroxy-beta,beta-caroten-4-one, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, ...
著者Zhao, Z, Vercellino, I, Knoppova, J, Sobotka, R, Murray, J.W, Nixon, P.J, Sazanov, L.A, Komenda, J.
登録日2022-08-19
公開日2023-08-16
実験手法ELECTRON MICROSCOPY (3.15 Å)
主引用文献The Ycf48 accessory factor occupies the site of the oxygen-evolving manganese cluster during photosystem II biogenesis.
Nat Commun, 14, 2023
8AJU
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Crystal structure of the Q65A mutant of S-adenosyl-L-homocysteine hydrolase from Pseudomonas aeruginosa cocrystallized with adenosine in the presence of K+ cations
分子名称: ADENOSINE, Adenosylhomocysteinase, GLYCEROL, ...
著者Drozdzal, P, Wozniak, K, Malecki, P, Gawel, M, Komorowska, M, Brzezinski, K.
登録日2022-07-28
公開日2023-08-16
実験手法X-RAY DIFFRACTION (1.645 Å)
主引用文献Crystal structure of the Q65A mutant of S-adenosyl-L-homocysteine hydrolase from Pseudomonas aeruginosa cocrystallized with adenosine in the presence of K+ cations
To Be Published
5VMA
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Structure of B. pumilus GH48 in complex with a cellobio-derived isofagomine
分子名称: (3R,4R,5R)-3-hydroxy-5-(hydroxymethyl)piperidin-4-yl 4-O-beta-D-glucopyranosyl-beta-D-glucopyranoside, (3R,4R,5R)-3-hydroxy-5-(hydroxymethyl)piperidin-4-yl beta-D-glucopyranoside, 1,2-ETHANEDIOL, ...
著者Alahuhta, P.M, Lunin, V.V.
登録日2017-04-27
公開日2018-10-31
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Bacillus pumilus family 48 glycoside hydrolase in complex with cellobio-derived isofagomine
To Be Published
5W3Z
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Crystal structure of SsoPox AsC6 mutant (L72I-Y99F-I122L-L228M-F229S-W263L)
分子名称: 1,2-ETHANEDIOL, Aryldialkylphosphatase, COBALT (II) ION, ...
著者Hiblot, J, Gotthard, G, Jacquet, P, Daude, D, Bergonzi, C, Chabriere, E, Elias, M.
登録日2017-06-08
公開日2018-01-10
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.55 Å)
主引用文献Rational engineering of a native hyperthermostable lactonase into a broad spectrum phosphotriesterase.
Sci Rep, 7, 2017
1U07
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Crystal Structure of the 92-residue C-term. part of TonB with significant structural changes compared to shorter fragments
分子名称: TonB protein
著者Koedding, J, Killig, F, Polzer, P, Howard, S.P, Diederichs, K, Welte, W.
登録日2004-07-13
公開日2004-11-30
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.13 Å)
主引用文献Crystal structure of a 92-residue c-terminal fragment of TonB from Escherichia coli reveals significant conformational changes compared to structures of smaller TonB fragments
J.Biol.Chem., 280, 2005
8ASP
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RCII/PSI complex, focused refinement of PSI
分子名称: (1R,2S)-4-{(1E,3E,5E,7E,9E,11E,13E,15E,17E)-18-[(4S)-4-hydroxy-2,6,6-trimethylcyclohex-1-en-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaen-1-yl}-2,5,5-trimethylcyclohex-3-en-1-ol, (3'R)-3'-hydroxy-beta,beta-caroten-4-one, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, ...
著者Zhao, Z, Vercellino, I, Knoppova, J, Sobotka, R, Murray, J.W, Nixon, P.J, Sazanov, L.A, Komenda, J.
登録日2022-08-20
公開日2023-08-16
実験手法ELECTRON MICROSCOPY (2.9 Å)
主引用文献The Ycf48 accessory factor occupies the site of the oxygen-evolving manganese cluster during photosystem II biogenesis.
Nat Commun, 14, 2023
6Z52
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Crystal structure of CLK3 in complex with macrocycle ODS2003136
分子名称: 1,2-ETHANEDIOL, 11,15-dimethyl-6-(4-methylpiperazin-1-yl)-8-oxa-2,11,15,19,21,23-hexazatetracyclo[15.6.1.13,7.020,24]pentacosa-1(23),3(25),4,6,17,20(24),21-heptaen-10-one, CHLORIDE ION, ...
著者Chaikuad, A, Benderitter, P, Hoflack, J, Denis, A, Knapp, S, Structural Genomics Consortium (SGC)
登録日2020-05-26
公開日2020-06-03
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.12 Å)
主引用文献Crystal structure of CLK3 in complex with macrocycle ODS2003136
To Be Published
6T7X
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Crystal structure of PCNA from P. abyssi
分子名称: DNA polymerase sliding clamp
著者Madru, C, Raia, P, Hugonneau Beaufet, I, Delarue, M, Carroni, M, Sauguet, L.
登録日2019-10-23
公開日2020-03-04
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structural basis for the increased processivity of D-family DNA polymerases in complex with PCNA.
Nat Commun, 11, 2020
6ZGG
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Furin Cleaved Spike Protein of SARS-CoV-2 with One RBD Erect
分子名称: Spike glycoprotein
著者Wrobel, A.G, Benton, D.J, Rosenthal, P.B, Gamblin, S.J.
登録日2020-06-18
公開日2020-07-01
最終更新日2020-09-16
実験手法ELECTRON MICROSCOPY (3.8 Å)
主引用文献SARS-CoV-2 and bat RaTG13 spike glycoprotein structures inform on virus evolution and furin-cleavage effects.
Nat.Struct.Mol.Biol., 27, 2020
7RS3
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Crystal Structure of the ER-alpha Ligand-binding Domain (L372S, L536S) in complex with DMERI-29
分子名称: (1S,2R,4S)-6-[4-(benzyloxy)phenyl]-5-(4-hydroxyphenyl)-N-(4-methoxyphenyl)-N-(2,2,2-trifluoroethyl)-7-oxabicyclo[2.2.1]hept-5-ene-2-sulfonamide, CYSTEINE, Estrogen receptor, ...
著者Min, J, Nwachukwu, J.C, Min, C.K, Njeri, J.W, Srinivasan, S, Rangarajan, E.S, Nettles, C.C, Yan, S, Houtman, R, Griffin, P.R, Izard, T, Katzenellenbogen, B.S, Katzenellenbogen, J.A, Nettles, K.W.
登録日2021-08-10
公開日2021-09-08
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.84 Å)
主引用文献Dual-mechanism estrogen receptor inhibitors.
Proc.Natl.Acad.Sci.USA, 118, 2021
6TUI
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Virion of empty GTA particle
分子名称: Adaptor protein Rcc01688, Phage major capsid protein, HK97 family, ...
著者Bardy, P, Fuzik, T, Hrebik, D, Pantucek, R, Beatty, J.T, Plevka, P.
登録日2020-01-07
公開日2020-10-14
最終更新日2024-05-22
実験手法ELECTRON MICROSCOPY (10.47 Å)
主引用文献Virion of empty GTA particle
Nat Commun, 11, 2020
8AM5
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RCII/PSI complex, class 3
分子名称: (1R,2S)-4-{(1E,3E,5E,7E,9E,11E,13E,15E,17E)-18-[(4S)-4-hydroxy-2,6,6-trimethylcyclohex-1-en-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaen-1-yl}-2,5,5-trimethylcyclohex-3-en-1-ol, (3'R)-3'-hydroxy-beta,beta-caroten-4-one, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, ...
著者Zhao, Z, Vercellino, I, Knoppova, J, Sobotka, R, Murray, J.W, Nixon, P.J, Sazanov, L.A, Komenda, J.
登録日2022-08-02
公開日2023-08-16
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献The Ycf48 accessory factor occupies the site of the oxygen-evolving manganese cluster during photosystem II biogenesis.
Nat Commun, 14, 2023
6DPS
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Crystal Structure of Neisseria meningitidis DsbD n-terminal domain in the oxidised form
分子名称: Thiol:disulfide interchange protein DsbD, ZINC ION
著者Heras, B, Smith, R.P, Paxman, J.J.
登録日2018-06-09
公開日2018-09-12
最終更新日2018-11-07
実験手法X-RAY DIFFRACTION (2.556 Å)
主引用文献Structural and biochemical insights into the disulfide reductase mechanism of DsbD, an essential enzyme for neisserial pathogens.
J. Biol. Chem., 293, 2018
4MXE
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BU of 4mxe by Molmil
Human ESCO1 (Eco1/Ctf7 ortholog), acetyltransferase domain in complex with acetyl-CoA
分子名称: ACETYL COENZYME *A, N-acetyltransferase ESCO1
著者Karlberg, T, Wisniewska, M, Thorsell, A.G, Kouznetsova, E, Arrowsmith, C.H, Berglund, H, Bountra, C, Collins, R, Edwards, A.M, Flodin, S, Flores, A, Graslund, S, Hammarstrom, M, Johansson, I, Kallas, A, Kraulis, P, Kotenyova, T, Moche, M, Nielsen, T.K, Nordlund, P, Nyman, T, Persson, C, Schutz, P, Svensson, L, Tresaugues, L, Van Den Berg, S, Wahlberg, E, Weigelt, J, Welin, M, Schuler, H, Structural Genomics Consortium (SGC)
登録日2013-09-26
公開日2015-04-08
最終更新日2016-05-18
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Sister Chromatid Cohesion Establishment Factor ESCO1 Operates by Substrate-Assisted Catalysis.
Structure, 24, 2016
4N7L
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Zinc Substituted Reaction Center M(L214H) Variant of Rhodobacter sphaeroides
分子名称: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, CARDIOLIPIN, FE (III) ION, ...
著者Hardjasa, A, Murphy, M.E.P.
登録日2013-10-15
公開日2014-01-22
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.85 Å)
主引用文献Structural and kinetic properties of Rhodobacter sphaeroides photosynthetic reaction centers containing exclusively Zn-coordinated bacteriochlorophyll as bacteriochlorin cofactors.
Biochim.Biophys.Acta, 1837, 2014
4MYO
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Crystal structure of streptogramin group A antibiotic acetyltransferase VatA from Staphylococcus aureus
分子名称: CHLORIDE ION, MAGNESIUM ION, SULFATE ION, ...
著者Stogios, P.J, Minasov, G, Dong, A, Evdokimova, E, Yim, V, Krishnamoorthy, M, Di Leo, R, Courvalin, P, Savchenko, A, Anderson, W.F, Center for Structural Genomics of Infectious Diseases (CSGID)
登録日2013-09-27
公開日2013-10-16
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.696 Å)
主引用文献Potential for Reduction of Streptogramin A Resistance Revealed by Structural Analysis of Acetyltransferase VatA.
Antimicrob.Agents Chemother., 58, 2014
4ENQ
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Structure of E530D variant E. coli KatE
分子名称: CIS-HEME D HYDROXYCHLORIN GAMMA-SPIROLACTONE, Catalase HPII
著者Loewen, P.C, Jha, V.
登録日2012-04-13
公開日2012-05-02
最終更新日2023-12-06
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Influence of main channel structure on H(2)O(2) access to the heme cavity of catalase KatE of Escherichia coli.
Arch.Biochem.Biophys., 526, 2012
5VW4
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Nicotinamide soak of Y316S mutant of corn root ferredoxin:NADP+ reductase
分子名称: FLAVIN-ADENINE DINUCLEOTIDE, Ferredoxin--NADP reductase, MAGNESIUM ION, ...
著者Kean, K.M, Carpenter, R.A, Hall, A.R, Karplus, P.A.
登録日2017-05-21
公開日2017-08-23
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.351 Å)
主引用文献High-resolution studies of hydride transfer in the ferredoxin:NADP(+) reductase superfamily.
FEBS J., 284, 2017
5VWN
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Triosephosphate isomerases deletion loop 3 from Trichomonas vaginalis
分子名称: SODIUM ION, Triosephosphate isomerase
著者Lara-Gonzalez, S, Rojas-Mendez, K, Jimenez-Sandoval, P, Estrella-Hernandez, P, Brieba, L.G.
登録日2017-05-22
公開日2018-04-04
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.74 Å)
主引用文献A competent catalytic active site is necessary for substrate induced dimer assembly in triosephosphate isomerase.
Biochim. Biophys. Acta, 1865, 2017
6ZIL
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Structure of the isolated REC domain of RcsB from Salmonella enterica serovar Typhimurium in the apo form
分子名称: Transcriptional regulatory protein RcsB
著者Huesa, J, Marina, A, Casino, P.
登録日2020-06-26
公開日2021-02-17
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (3.12 Å)
主引用文献Structure-based analyses of Salmonella RcsB variants unravel new features of the Rcs regulon.
Nucleic Acids Res., 49, 2021
5W3W
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Crystal structure of SsoPox AsD6 mutant (V27A-Y97W-L228M-W263M) - open form
分子名称: 1,2-ETHANEDIOL, Aryldialkylphosphatase, COBALT (II) ION, ...
著者Hiblot, J, Gotthard, G, Jacquet, P, Daude, D, Bergonzi, C, Chabriere, E, Elias, M.
登録日2017-06-08
公開日2018-01-10
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.95 Å)
主引用文献Rational engineering of a native hyperthermostable lactonase into a broad spectrum phosphotriesterase.
Sci Rep, 7, 2017
7RBS
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The crystal structure of Papain-Like Protease of SARS CoV-2, C111S mutant, in complex with human ISG15
分子名称: Papain-like protease, Ubiquitin-like protein ISG15, ZINC ION
著者Osipiuk, J, Tesar, C, Jedrzejczak, R, Endres, M, Wydorski, P, Joachimiak, L, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
登録日2021-07-06
公開日2021-09-29
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.98 Å)
主引用文献Dual domain recognition determines SARS-CoV-2 PLpro selectivity for human ISG15 and K48-linked di-ubiquitin.
Nat Commun, 14, 2023
1U01
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High resolution NMR structure of 5-d(GCGT*GCG)-3/5-d(CGCACGC)-3 (T*represents a cyclohexenyl nucleotide)
分子名称: 5'-D(*CP*GP*CP*AP*CP*GP*C)-3', 5'-D(*GP*CP*GP*(XTR)P*GP*CP*G)-3'
著者Nauwelaerts, K, Lescrinier, E, Sclep, G, Herdewijn, P.
登録日2004-07-12
公開日2005-05-31
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Cyclohexenyl nucleic acids: conformationally flexible oligonucleotides.
Nucleic Acids Res., 33, 2005
1FW6
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CRYSTAL STRUCTURE OF A TAQ MUTS-DNA-ADP TERNARY COMPLEX
分子名称: 5'-D(*GP*CP*GP*AP*CP*GP*CP*TP*AP*GP*CP*GP*TP*GP*CP*GP*GP*CP*TP*CP*GP*TP*C)-3', 5'-D(*GP*GP*AP*CP*GP*AP*GP*CP*CP*GP*CP*CP*GP*CP*TP*AP*GP*CP*GP*TP*CP*G)-3', ADENOSINE-5'-DIPHOSPHATE, ...
著者Junop, M.S, Obmolova, G, Rausch, K, Hsieh, P, Yang, W.
登録日2000-09-21
公開日2001-02-19
最終更新日2018-01-31
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Composite active site of an ABC ATPase: MutS uses ATP to verify mismatch recognition and authorize DNA repair.
Mol.Cell, 7, 2001
6Z0K
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Crystal structure of laccase from Pediococcus acidilactici Pp5930 (Hepes pH 7.5)
分子名称: 1,2-ETHANEDIOL, COPPER (II) ION, Putative multicopper oxidase mco
著者Casino, P, Huesa, J, Pardo, I.
登録日2020-05-09
公開日2021-03-10
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structural analysis and biochemical properties of laccase enzymes from two Pediococcus species.
Microb Biotechnol, 14, 2021

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