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PDB: 46375 results

4L56
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BU of 4l56 by Molmil
tRNA guanine transglycosylase H333D mutant apo structure
Descriptor: GLYCEROL, Queuine tRNA-ribosyltransferase, ZINC ION
Authors:Nguyen, T.X.P, Heine, A, Klebe, G.
Deposit date:2013-06-10
Release date:2014-12-24
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:What Glues a Homodimer Together: Systematic Analysis of the Stabilizing Effect of an Aromatic Hot Spot in the Protein-Protein Interface of the tRNA-Modifying Enzyme Tgt.
Acs Chem.Biol., 10, 2015
4L48
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BU of 4l48 by Molmil
Crystal structure of d78n mutant clavibacter michiganensis expansin in complex with cellohexaose
Descriptor: beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose, cellulose binding protein
Authors:Yennawar, N.H, Yennawar, H.P, Georgelis, N, Cosgrove, D.
Deposit date:2013-06-07
Release date:2014-03-26
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of wild type and d78n mutant clavibacter michiganensis expansin, in apo form and in complex with oligosaccharides
To be Published
3ILA
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BU of 3ila by Molmil
Crystal structure of rabbit ryanodine receptor 1 N-terminal domain (9-205)
Descriptor: Ryanodine receptor 1
Authors:Lobo, P.A, Van Petegem, F.
Deposit date:2009-08-06
Release date:2009-11-17
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Crystal structures of the N-terminal domains of cardiac and skeletal muscle ryanodine receptors: insights into disease mutations.
Structure, 17, 2009
1BZU
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BU of 1bzu by Molmil
STABILIZATION OF THE ANTICODON STEM-LOOP OF TRNALYS, 3 BY AN A+C BASE PAIR AND BY PSEUDOURIDINE, NMR, 1 STRUCTURE
Descriptor: TRNA
Authors:Durant, P.C, Davis, D.R.
Deposit date:1998-11-05
Release date:1999-04-27
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Stabilization of the anticodon stem-loop of tRNALys,3 by an A+-C base-pair and by pseudouridine.
J.Mol.Biol., 285, 1999
8VW8
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BU of 8vw8 by Molmil
UIC-13-BPE-AgNO3 silver binding with UIC-13-BPE
Descriptor: NITRATE ION, SILVER ION, UIC-13-BPE-AgNO3 silver binding with UIC-13-BPE
Authors:Ganatra, P.
Deposit date:2024-01-31
Release date:2024-08-07
Last modified:2024-09-04
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Diverse Proteomimetic Frameworks via Rational Design of pi-Stacking Peptide Tectons.
J.Am.Chem.Soc., 146, 2024
6AI9
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BU of 6ai9 by Molmil
Cab2 mutant-H337A complex with phosphopantothenate
Descriptor: N-[(2R)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanine, Phosphopantothenate--cysteine ligase CAB2
Authors:Zheng, P, Zhu, Z.
Deposit date:2018-08-22
Release date:2019-03-20
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.09 Å)
Cite:Crystallographic Analysis of the Catalytic Mechanism of Phosphopantothenoylcysteine Synthetase from Saccharomyces cerevisiae.
J. Mol. Biol., 431, 2019
8Y9C
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BU of 8y9c by Molmil
De novo design mini-binder in complex with TcdB4
Descriptor: De novo design Minibinder, Toxin B, ZINC ION
Authors:Lv, X.C, Lu, P.L.
Deposit date:2024-02-06
Release date:2024-08-28
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (3 Å)
Cite:De novo design of mini-protein binders broadly neutralizing Clostridioides difficile toxin B variants.
Nat Commun, 15, 2024
8X2V
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BU of 8x2v by Molmil
Crystal structure of the ancestral GH19 chitinase, Anc4+LoopII (P12K/N13H mutant)
Descriptor: GH19 chitinase
Authors:Kozome, D, Laurino, P.
Deposit date:2023-11-10
Release date:2024-04-03
Last modified:2024-09-04
Method:X-RAY DIFFRACTION (1.29 Å)
Cite:Remote loop evolution reveals a complex biological function for chitinase enzymes beyond the active site.
Nat Commun, 15, 2024
6T62
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BU of 6t62 by Molmil
Crystal structure of Acinetobacter baumannii FabG in complex with NADPH at 1.8 A resolution
Descriptor: 3-oxoacyl-(Acyl-carrier-protein) reductase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Vella, P, Schnell, R, Schneider, G.
Deposit date:2019-10-17
Release date:2020-11-18
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:A FabG inhibitor targeting an allosteric binding site inhibits several orthologs from Gram-negative ESKAPE pathogens.
Bioorg.Med.Chem., 30, 2020
6T5M
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BU of 6t5m by Molmil
Crystal structure of 2-methylisocitrate lyase (PrpB) from Pseudomonas aeruginosa in complex with Mg(II)-pyruvate.
Descriptor: 2-methylisocitrate lyase, MAGNESIUM ION, PYRUVIC ACID
Authors:Wijaya, A.J, Brear, P, Dolan, S.K, Welch, M.
Deposit date:2019-10-16
Release date:2020-09-30
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:Crystal structure of 2-methylisocitrate lyase (PrpB) from Pseudomonas aeruginosa in complex with Mg(II)-pyruvate.
To Be Published
9CK8
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BU of 9ck8 by Molmil
Lineage IV Lassa virus glycoprotein (Josiah) in complex with polyclonal antibody (GPC-A epitope) from rabbit 189
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Brouwer, P.J.M, Perrett, H.R, Ward, A.B.
Deposit date:2024-07-08
Release date:2024-09-25
Method:ELECTRON MICROSCOPY (3.04 Å)
Cite:Defining bottlenecks and opportunities for Lassa virus neutralization by structural profiling of vaccine-induced polyclonal antibody responses.
Cell Rep, 43, 2024
7NZ1
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BU of 7nz1 by Molmil
Respiratory complex I from Escherichia coli - focused refinement of cytoplasmic arm
Descriptor: CALCIUM ION, FE2/S2 (INORGANIC) CLUSTER, FLAVIN MONONUCLEOTIDE, ...
Authors:Kolata, P, Efremov, R.G.
Deposit date:2021-03-23
Release date:2021-08-18
Method:ELECTRON MICROSCOPY (2.1 Å)
Cite:Structure of Escherichia coli respiratory complex I reconstituted into lipid nanodiscs reveals an uncoupled conformation.
Elife, 10, 2021
8WU3
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BU of 8wu3 by Molmil
Crystal structure of RNA-dependent RNA polymerases from Alongshan virus
Descriptor: RNA polymerase
Authors:Liu, Z.Y, Han, P, Peng, Q, Qi, J.X.
Deposit date:2023-10-20
Release date:2024-02-07
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Crystal structures of RNA-dependent RNA polymerases from Jingmen tick virus and Alongshan virus
HLIFE, 2, 2024
8VPZ
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BU of 8vpz by Molmil
UIC-1-BPE1MER mutation of UIC-1-cap
Descriptor: METHANOL, UIC-1-BPE1MER
Authors:Ganatra, P.
Deposit date:2024-01-17
Release date:2024-08-07
Last modified:2024-09-04
Method:X-RAY DIFFRACTION (1.04 Å)
Cite:Diverse Proteomimetic Frameworks via Rational Design of pi-Stacking Peptide Tectons.
J.Am.Chem.Soc., 146, 2024
8VSF
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BU of 8vsf by Molmil
UIC-13-BPE extension of UIC-1
Descriptor: ACETONITRILE, UIC-13-BPE
Authors:Ganatra, P.
Deposit date:2024-01-24
Release date:2024-08-07
Last modified:2024-09-04
Method:X-RAY DIFFRACTION (1.11 Å)
Cite:Diverse Proteomimetic Frameworks via Rational Design of pi-Stacking Peptide Tectons.
J.Am.Chem.Soc., 146, 2024
9ASY
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BU of 9asy by Molmil
Crystal structure of SARS-CoV-2 3CL protease in complex with a m-chlorobenzyl 2-pyrrolidone inhibitor
Descriptor: (1R,2S)-2-({N-[({(2S)-1-[(3-chlorophenyl)methyl]-5-oxopyrrolidin-2-yl}methoxy)carbonyl]-L-leucyl}amino)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid, (1S,2S)-2-({N-[({(2S)-1-[(3-chlorophenyl)methyl]-5-oxopyrrolidin-2-yl}methoxy)carbonyl]-L-leucyl}amino)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid, 3C-like proteinase nsp5, ...
Authors:Lovell, S, Cooper, A, Battaile, K.P, Dampalla, C.S, Groutas, W.C.
Deposit date:2024-02-26
Release date:2024-07-10
Last modified:2024-08-07
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure-Guided Design of Potent Coronavirus Inhibitors with a 2-Pyrrolidone Scaffold: Biochemical, Crystallographic, and Virological Studies.
J.Med.Chem., 67, 2024
9BKL
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BU of 9bkl by Molmil
Cobalt substituted rubredoxin from Pyrococcus furiosus solved by Co/S-SAD
Descriptor: COBALT (II) ION, Rubredoxin
Authors:Zhou, D, Chen, L, Rose, J.P, Wang, B.C.
Deposit date:2024-04-29
Release date:2024-06-05
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Cobalt substituted rubredoxin from Pyrococcus furiosus solved by Co/S-SAD
To Be Published
8X6B
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BU of 8x6b by Molmil
Crystal structure of immune receptor PVRIG in complex with ligand Nectin-2
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Nectin-2, Transmembrane protein PVRIG
Authors:Hu, S.T, Han, P, Wang, H, Qi, J.X.
Deposit date:2023-11-21
Release date:2024-04-24
Last modified:2024-07-24
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural basis for the immune recognition and selectivity of the immune receptor PVRIG for ligand Nectin-2.
Structure, 32, 2024
4L7V
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BU of 4l7v by Molmil
Crystal structure of Protein L-isoaspartyl-O-methyltransferase of Vibrio cholerae
Descriptor: ACETATE ION, CALCIUM ION, Protein-L-isoaspartate O-methyltransferase, ...
Authors:Chatterjee, T, Mukherjee, D, Chakrabarti, P.
Deposit date:2013-06-14
Release date:2014-06-18
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Crystal structure and activity of protein L-isoaspartyl-O-methyltransferase from Vibrio cholerae, and the effect of AdoHcy binding.
Arch.Biochem.Biophys., 583, 2015
1BZ3
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BU of 1bz3 by Molmil
STABILIZATION OF THE ANTICODON STEM-LOOP OF TRNALYS,3 BY AN A+C BASE PAIR AND BY PSEUDOURIDINE, NMR, 1 STRUCTURE
Descriptor: TRNA
Authors:Durant, P.C, Davis, D.R.
Deposit date:1998-11-05
Release date:1999-04-27
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Stabilization of the anticodon stem-loop of tRNALys,3 by an A+-C base-pair and by pseudouridine.
J.Mol.Biol., 285, 1999
8XI3
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BU of 8xi3 by Molmil
Structure of mouse SCMC-14-3-3gama complex
Descriptor: 14-3-3 protein gamma, NACHT, LRR and PYD domains-containing protein 5, ...
Authors:Chi, P, Han, Z, Jiao, H, Li, J, Wang, X, Hu, H, Deng, D.
Deposit date:2023-12-19
Release date:2024-10-02
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Structure of mouse SCMC-14-3-3gama complex
To Be Published
8VPE
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BU of 8vpe by Molmil
UIC-10-BIF extension of UIC-1
Descriptor: ACETONITRILE, UIC-10-BIF
Authors:Ganatra, P.
Deposit date:2024-01-16
Release date:2024-08-07
Last modified:2024-09-04
Method:X-RAY DIFFRACTION (0.91 Å)
Cite:Diverse Proteomimetic Frameworks via Rational Design of pi-Stacking Peptide Tectons.
J.Am.Chem.Soc., 146, 2024
8X4O
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BU of 8x4o by Molmil
Crystal structure of the Y135A mutant of DIMT1 in complex with 5'-methylthioadenosine from Pyrococcus horikoshii
Descriptor: 1,2-ETHANEDIOL, 5'-DEOXY-5'-METHYLTHIOADENOSINE, Probable ribosomal RNA small subunit methyltransferase A, ...
Authors:Saha, S, Kanaujia, S.P.
Deposit date:2023-11-15
Release date:2024-08-28
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural and functional characterization of archaeal DIMT1 unveils distinct protein dynamics essential for efficient catalysis.
Structure, 32, 2024
8X4I
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BU of 8x4i by Molmil
Crystal structure of the D117A mutant of DIMT1 in complex with 5'-methylthioadenosine from Pyrococcus horikoshii
Descriptor: 5'-DEOXY-5'-METHYLTHIOADENOSINE, Probable ribosomal RNA small subunit methyltransferase A, ZINC ION
Authors:Saha, S, Dutta, A, Kanaujia, S.P.
Deposit date:2023-11-15
Release date:2024-08-28
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Structural and functional characterization of archaeal DIMT1 unveils distinct protein dynamics essential for efficient catalysis.
Structure, 32, 2024
1JG6
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BU of 1jg6 by Molmil
T4 phage BGT in complex with UDP
Descriptor: DNA BETA-GLUCOSYLTRANSFERASE, URIDINE-5'-DIPHOSPHATE
Authors:Morera, S, Lariviere, L, Kurzeck, J, Aschke-Sonnenborn, U, Freemont, P.S, Janin, J, Ruger, W.
Deposit date:2001-06-23
Release date:2001-08-15
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:High resolution crystal structures of T4 phage beta-glucosyltransferase: induced fit and effect of substrate and metal binding.
J.Mol.Biol., 311, 2001

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