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PDB: 398 results

2W2P
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BU of 2w2p by Molmil
PCSK9-deltaC D374A mutant bound to WT EGF-A of LDLR
Descriptor: CALCIUM ION, LOW-DENSITY LIPOPROTEIN RECEPTOR, PROPROTEIN CONVERTASE SUBTILISIN/KEXIN TYPE 9
Authors:Bottomley, M.J, Cirillo, A, Orsatti, L, Ruggeri, L, Fisher, T.S, Santoro, J.C, Cummings, R.T, Cubbon, R.M, Lo Surdo, P, Calzetta, A, Noto, A, Baysarowich, J, Mattu, M, Talamo, F, De Francesco, R, Sparrow, C.P, Sitlani, A, Carfi, A.
Deposit date:2008-11-03
Release date:2008-11-18
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.62 Å)
Cite:Structural and Biochemical Characterization of the Wild Type Pcsk9/Egf-Ab Complex and Natural Fh Mutants.
J.Biol.Chem., 284, 2009
1DU1
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BU of 1du1 by Molmil
PEPTIDE FRAGMENT THR671-LEU690 OF THE RABBIT SKELETAL DIHYDROPYRIDINE RECEPTOR
Descriptor: SKELETAL DIHYDROPYRIDINE RECEPTOR
Authors:Casarotto, M, Dulhunty, A.
Deposit date:2000-01-13
Release date:2000-07-19
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:A structural requirement for activation of skeletal ryanodine receptors by peptides of the dihydropyridine receptor II-III loop.
J.Biol.Chem., 275, 2000
1XWH
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BU of 1xwh by Molmil
NMR structure of the first phd finger of autoimmune regulator protein (AIRE1): insights into apeced
Descriptor: Autoimmune regulator, ZINC ION
Authors:Bottomley, M.J, Stier, G, Krasotkina, J, Legube, G, Simon, B, Akhtar, A, Sattler, M, Musco, G.
Deposit date:2004-11-01
Release date:2005-01-25
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:NMR structure of the first PHD finger of autoimmune regulator protein (AIRE1). Insights into autoimmune polyendocrinopathy-candidiasis-ectodermal dystrophy (APECED) disease
J.Biol.Chem., 280, 2005
1H5P
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BU of 1h5p by Molmil
Solution structure of the human Sp100b SAND domain by heteronuclear NMR.
Descriptor: NUCLEAR AUTOANTIGEN SP100-B
Authors:Bottomley, M.J, Liu, Z, Collard, M.W, Huggenvik, J.I, Gibson, T.J, Sattler, M.
Deposit date:2001-05-24
Release date:2001-07-06
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:The SAND domain structure defines a novel DNA-binding fold in transcriptional regulation.
Nat. Struct. Biol., 8, 2001
6S7X
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BU of 6s7x by Molmil
dARC1 capsid domain dimer, orthorhombic form at 1.7 Angstrom
Descriptor: Activity-regulated cytoskeleton associated protein 1, CHLORIDE ION, SODIUM ION
Authors:Cottee, M.A, Taylor, I.A.
Deposit date:2019-07-07
Release date:2020-01-15
Last modified:2020-01-22
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structure ofDrosophila melanogasterARC1 reveals a repurposed molecule with characteristics of retroviral Gag.
Sci Adv, 6, 2020
4BY2
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BU of 4by2 by Molmil
SAS-4 (dCPAP) TCP domain in complex with a Proline Rich Motif of Ana2 (dSTIL) of Drosophila Melanogaster
Descriptor: 1,2-ETHANEDIOL, ANASTRAL SPINDLE 2, SAS 4
Authors:Cottee, M.A, Muschalik, N, Wong, Y.L, Johnson, C.M, Johnson, S, Andreeva, A, Oegema, K, Lea, S.M, Raff, J.W, van Breugel, M.
Deposit date:2013-07-17
Release date:2013-09-18
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.57 Å)
Cite:Crystal structures of the CPAP/STIL complex reveal its role in centriole assembly and human microcephaly.
Elife, 2, 2013
6S7Y
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BU of 6s7y by Molmil
dARC1 capsid domain dimer, hexagonal form at 2.3 Angstrom
Descriptor: Activity-regulated cytoskeleton associated protein 1
Authors:Cottee, M.A, Taylor, I.A.
Deposit date:2019-07-07
Release date:2020-01-15
Last modified:2020-01-22
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure ofDrosophila melanogasterARC1 reveals a repurposed molecule with characteristics of retroviral Gag.
Sci Adv, 6, 2020
3IF9
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BU of 3if9 by Molmil
Crystal structure of Glycine Oxidase G51S/A54R/H244A mutant in complex with inhibitor glycolate
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, GLYCOLIC ACID, Glycine oxidase
Authors:Pedotti, M, Rosini, E, Molla, G, Moschetti, T, Vallone, B, Savino, C, Pollegioni, L.
Deposit date:2009-07-24
Release date:2009-10-27
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Glyphosate resistance by engineering the flavoenzyme glycine oxidase.
J.Biol.Chem., 284, 2009
5AL6
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BU of 5al6 by Molmil
Central Coiled-Coil Domain (CCCD) of Drosophila melanogaster Ana2. A natural, parallel, tetrameric coiled-coil bundle.
Descriptor: ANASTRAL SPINDLE 2, SODIUM ION
Authors:Cottee, M.A, Lea, S.M.
Deposit date:2015-03-06
Release date:2015-06-03
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (0.8 Å)
Cite:The homo-oligomerisation of both Sas-6 and Ana2 is required for efficient centriole assembly in flies.
Elife, 4, 2015
5AL7
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N-terminal fragment of Drosophila melanogaster Sas-6 (F143D), dimerised via the coiled-coil domain.
Descriptor: NITRATE ION, SPINDLE ASSEMBLY ABNORMAL PROTEIN 6 HOMOLOG
Authors:Cottee, M.A, Johnson, S, Lea, S.M.
Deposit date:2015-03-06
Release date:2015-06-03
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.92 Å)
Cite:The homo-oligomerisation of both Sas-6 and Ana2 is required for efficient centriole assembly in flies.
Elife, 4, 2015
1S8J
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BU of 1s8j by Molmil
Nitrate-bound D85S mutant of bacteriorhodopsin
Descriptor: 1-[2,6,10.14-TETRAMETHYL-HEXADECAN-16-YL]-2-[2,10,14-TRIMETHYLHEXADECAN-16-YL]GLYCEROL, Bacteriorhodopsin precursor, NITRATE ION, ...
Authors:Facciotti, M.T, Cheung, V.S, Lunde, C.S, Rouhani, S, Baliga, N.S, Glaeser, R.M.
Deposit date:2004-02-02
Release date:2004-06-08
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Specificity of anion binding in the substrate pocket of bacteriorhodopsin.
Biochemistry, 43, 2004
1S8L
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BU of 1s8l by Molmil
Anion-free form of the D85S mutant of bacteriorhodopsin from crystals grown in the presence of halide
Descriptor: 1-[2,6,10.14-TETRAMETHYL-HEXADECAN-16-YL]-2-[2,10,14-TRIMETHYLHEXADECAN-16-YL]GLYCEROL, Bacteriorhodopsin precursor, RETINAL
Authors:Facciotti, M.T, Cheung, V.S, Lunde, C.S, Rouhani, S, Baliga, N.S, Glaeser, R.M.
Deposit date:2004-02-02
Release date:2004-06-08
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Specificity of anion binding in the substrate pocket of bacteriorhodopsin.
Biochemistry, 43, 2004
2VQQ
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BU of 2vqq by Molmil
Structure of HDAC4 catalytic domain (a double cysteine-to-alanine mutant) bound to a trifluoromethylketone inhbitor
Descriptor: 2,2,2-TRIFLUORO-1-{5-[(3-PHENYL-5,6-DIHYDROIMIDAZO[1,2-A]PYRAZIN-7(8H)-YL)CARBONYL]THIOPHEN-2-YL}ETHANE-1,1-DIOL, HISTONE DEACETYLASE 4, POTASSIUM ION, ...
Authors:Bottomley, M.J, Lo Surdo, P, Di Giovine, P, Cirillo, A, Scarpelli, R, Ferrigno, F, Jones, P, Neddermann, P, De Francesco, R, Steinkuhler, C, Gallinari, P, Carfi, A.
Deposit date:2008-03-18
Release date:2008-07-08
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural and Functional Analysis of the Human Hdac4 Catalytic Domain Reveals a Regulatory Zinc-Binding Domain.
J.Biol.Chem., 283, 2008
2VQO
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Structure of HDAC4 catalytic domain with a gain-of-function muation bound to a trifluoromethylketone inhbitor
Descriptor: 2,2,2-TRIFLUORO-1-{5-[(3-PHENYL-5,6-DIHYDROIMIDAZO[1,2-A]PYRAZIN-7(8H)-YL)CARBONYL]THIOPHEN-2-YL}ETHANE-1,1-DIOL, HISTONE DEACETYLASE 4, POTASSIUM ION, ...
Authors:Bottomley, M.J, Lo Surdo, P, Di Giovine, P, Cirillo, A, Scarpelli, R, Ferrigno, F, Jones, P, Neddermann, P, De Francesco, R, Steinkuhler, C, Gallinari, P, Carfi, A.
Deposit date:2008-03-18
Release date:2008-07-08
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Structural and Functional Analysis of the Human Hdac4 Catalytic Domain Reveals a Regulatory Zinc-Binding Domain.
J.Biol.Chem., 283, 2008
2VQV
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BU of 2vqv by Molmil
Structure of HDAC4 catalytic domain with a gain-of-function mutation bound to a hydroxamic acid inhibitor
Descriptor: HISTONE DEACETYLASE 4, N-hydroxy-5-[(3-phenyl-5,6-dihydroimidazo[1,2-a]pyrazin-7(8H)-yl)carbonyl]thiophene-2-carboxamide, POTASSIUM ION, ...
Authors:Bottomley, M.J, Lo Surdo, P, Di Giovine, P, Cirillo, A, Scarpelli, R, Ferrigno, F, Jones, P, Neddermann, P, De Francesco, R, Steinkuhler, C, Gallinari, P, Carfi, A.
Deposit date:2008-03-19
Release date:2008-07-22
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Structural and Functional Analysis of the Human Hdac4 Catalytic Domain Reveals a Regulatory Structural Zinc-Binding Domain.
J.Biol.Chem., 283, 2008
3U3F
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BU of 3u3f by Molmil
Structural basis for the interaction of Pyk2 PAT domain with paxillin LD motifs
Descriptor: Paxillin LD2 peptide, Protein-tyrosine kinase 2-beta
Authors:Vanarotti, M, Miller, D.J, Guibao, C.C, Zheng, J.J.
Deposit date:2011-10-05
Release date:2012-10-24
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (3.101 Å)
Cite:Structural and Mechanistic Insights into the Interaction between Pyk2 and Paxillin LD Motifs.
J.Mol.Biol., 426, 2014
1ALG
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BU of 1alg by Molmil
SOLUTION STRUCTURE OF AN HGR INHIBITOR, NMR, 10 STRUCTURES
Descriptor: P11
Authors:Schott, M.K, Nordhoff, A, Becker, K, Kalbitzer, H.R, Schirmer, R.H.
Deposit date:1997-06-03
Release date:1997-10-15
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Denaturation and reactivation of dimeric human glutathione reductase--an assay for folding inhibitors.
Eur.J.Biochem., 245, 1997
2LK4
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BU of 2lk4 by Molmil
Structural and mechanistic insights into the interaction between PAT Pyk2 and Paxillin LD motif
Descriptor: Protein-tyrosine kinase 2-beta
Authors:Vanarotti, M, Miller, D, Guibao, C, Zheng, J.
Deposit date:2011-10-04
Release date:2012-10-10
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Structural and Mechanistic Insights into the Interaction between Pyk2 and Paxillin LD Motifs.
J.Mol.Biol., 426, 2014
2UV0
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BU of 2uv0 by Molmil
Structure of the P. aeruginosa LasR ligand-binding domain bound to its autoinducer
Descriptor: N-3-OXO-DODECANOYL-L-HOMOSERINE LACTONE, TRANSCRIPTIONAL ACTIVATOR PROTEIN LASR
Authors:Bottomley, M.J, Muraglia, E, Bazzo, R, Carfi, A.
Deposit date:2007-03-08
Release date:2007-03-27
Last modified:2019-07-24
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Molecular Insights Into Quorum Sensing in the Human Pathogen Pseudomonas Aeruginosa from the Structure of the Virulence Regulator Lasr Bound to its Autoinducer.
J.Biol.Chem., 282, 2007
2VQW
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BU of 2vqw by Molmil
Structure of inhibitor-free HDAC4 catalytic domain (with gain-of- function mutation His332Tyr)
Descriptor: HISTONE DEACETYLASE 4, POTASSIUM ION, ZINC ION
Authors:Bottomley, M.J, Lo Surdo, P, Di Giovine, P, Cirillo, A, Scarpelli, R, Ferrigno, F, Jones, P, Neddermann, P, De Francesco, R, Steinkuhler, C, Gallinari, P, Carfi, A.
Deposit date:2008-03-19
Release date:2008-08-05
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural and Functional Analysis of the Human Hdac4 Catalytic Domain Reveals a Regulatory Structural Zinc-Binding Domain.
J.Biol.Chem., 283, 2008
2VQM
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BU of 2vqm by Molmil
Structure of HDAC4 catalytic domain bound to a hydroxamic acid inhbitor
Descriptor: HISTONE DEACETYLASE 4, N-hydroxy-5-[(3-phenyl-5,6-dihydroimidazo[1,2-a]pyrazin-7(8H)-yl)carbonyl]thiophene-2-carboxamide, POTASSIUM ION, ...
Authors:Bottomley, M.J, Lo Surdo, P, Di Giovine, P, Cirillo, A, Scarpelli, R, Ferrigno, F, Jones, P, Neddermann, P, De Francesco, R, Steinkuhler, C, Gallinari, P, Carfi, A.
Deposit date:2008-03-17
Release date:2008-07-08
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural and Functional Analysis of the Human Hdac4 Catalytic Domain Reveals a Regulatory Zinc-Binding Domain.
J.Biol.Chem., 283, 2008
2VQJ
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Structure of HDAC4 catalytic domain bound to a trifluoromethylketone inhbitor
Descriptor: 1,4-DIETHYLENE DIOXIDE, 2,2,2-TRIFLUORO-1-{5-[(3-PHENYL-5,6-DIHYDROIMIDAZO[1,2-A]PYRAZIN-7(8H)-YL)CARBONYL]THIOPHEN-2-YL}ETHANE-1,1-DIOL, HISTONE DEACETYLASE 4, ...
Authors:Bottomley, M.J, Lo Surdo, P, Di Giovine, P, Cirillo, A, Scarpelli, R, Ferrigno, F, Jones, P, Neddermann, P, De Francesco, R, Steinkuhler, C, Gallinari, P, Carfi, A.
Deposit date:2008-03-17
Release date:2008-07-08
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural and Functional Analysis of the Human Hdac4 Catalytic Domain Reveals a Regulatory Zinc-Binding Domain.
J.Biol.Chem., 283, 2008
1OCA
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BU of 1oca by Molmil
HUMAN CYCLOPHILIN A, UNLIGATED, NMR, 20 STRUCTURES
Descriptor: CYCLOPHILIN A
Authors:Ottiger, M, Zerbe, O, Guntert, P, Wuthrich, K.
Deposit date:1997-07-07
Release date:1997-11-19
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:The NMR solution conformation of unligated human cyclophilin A.
J.Mol.Biol., 272, 1997
7NLH
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BU of 7nlh by Molmil
S. cerevisiae Ty1 p22 restriction factor, Gag CA-CTD, AUG1 variant
Descriptor: Ty1 Gag p22
Authors:Cottee, M.A, Taylor, I.A.
Deposit date:2021-02-22
Release date:2021-10-06
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structure of a Ty1 restriction factor reveals the molecular basis of transposition copy number control.
Nat Commun, 12, 2021
1ERD
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BU of 1erd by Molmil
THE NMR SOLUTION STRUCTURE OF THE PHEROMONE ER-2 FROM THE CILIATED PROTOZOAN EUPLOTES RAIKOVI
Descriptor: PHEROMONE ER-2
Authors:Ottiger, M, Szyperski, T, Luginbuhl, P, Ortenzi, C, Luporini, P, Bradshaw, R.A, Wuthrich, K.
Deposit date:1994-02-14
Release date:1994-10-15
Last modified:2022-02-16
Method:SOLUTION NMR
Cite:The NMR solution structure of the pheromone Er-2 from the ciliated protozoan Euplotes raikovi.
Protein Sci., 3, 1994

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