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PDB: 61 results

8DF8
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Structure of M. kandleri topoisomerase V in complex with DNA. 40 base pair symmetric DNA complex
Descriptor: DNA (42-MER), PHOSPHATE ION, PHOSPHITE ION, ...
Authors:Osterman, A, Mondragon, A.
Deposit date:2022-06-21
Release date:2022-08-31
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.92 Å)
Cite:Structures of topoisomerase V in complex with DNA reveal unusual DNA binding mode and novel relaxation mechanism.
Elife, 11, 2022
8DF9
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Structure of M. kandleri topoisomerase V in complex with DNA. 38 base pair asymmetric DNA complex
Descriptor: DNA (33-MER), DNA (5'-D(P*GP*CP*CP*TP*GP*CP*AP*CP*GP*AP*AP*GP*TP*AP*AP*GP*C)-3'), DNA (5'-D(P*GP*CP*CP*TP*GP*CP*AP*CP*GP*AP*AP*GP*TP*AP*AP*GP*CP*A)-3'), ...
Authors:Osterman, A, Mondragon, A.
Deposit date:2022-06-21
Release date:2022-08-31
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (3.24 Å)
Cite:Structures of topoisomerase V in complex with DNA reveal unusual DNA binding mode and novel relaxation mechanism.
Elife, 11, 2022
8DFB
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Structure of M. kandleri topoisomerase V in complex with DNA. 39 base pair symmetric DNA complex
Descriptor: DNA (40-MER), POTASSIUM ION, Topoisomerase V
Authors:Osterman, A, Mondragon, A.
Deposit date:2022-06-21
Release date:2022-08-31
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (3.17 Å)
Cite:Structures of topoisomerase V in complex with DNA reveal unusual DNA binding mode and novel relaxation mechanism.
Elife, 11, 2022
8DF7
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BU of 8df7 by Molmil
Structure of M. kandleri topoisomerase V in complex with DNA. 38 base pair symmetric DNA complex
Descriptor: DNA (39-MER), POTASSIUM ION, Topoisomerase V
Authors:Osterman, A, Mondragon, A.
Deposit date:2022-06-21
Release date:2022-08-31
Method:X-RAY DIFFRACTION (3.52 Å)
Cite:Structures of topoisomerase V in complex with DNA reveal unusual DNA binding mode and novel relaxation mechanism.
Elife, 11, 2022
1L2K
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BU of 1l2k by Molmil
Neutron Structure Determination of Sperm Whale Met-Myoglobin at 1.5A Resolution.
Descriptor: AMMONIUM CATION WITH D, MYOGLOBIN, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Ostermann, A, Tanaka, I, Engler, N, Niimura, N, Parak, F.G.
Deposit date:2002-02-21
Release date:2002-08-21
Last modified:2024-04-03
Method:NEUTRON DIFFRACTION (1.5 Å)
Cite:Hydrogen and deuterium in myoglobin as seen by a neutron structure determination at 1.5 A resolution.
Biophys.Chem., 95, 2002
1DO3
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BU of 1do3 by Molmil
CARBONMONOXY-MYOGLOBIN (MUTANT L29W) AFTER PHOTOLYSIS AT T>180K
Descriptor: CARBON MONOXIDE, MYOGLOBIN, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Ostermann, A, Waschipky, R, Parak, F.G, Nienhaus, G.U.
Deposit date:1999-12-18
Release date:2000-01-05
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Ligand binding and conformational motions in myoglobin.
Nature, 404, 2000
1DO7
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BU of 1do7 by Molmil
CARBONMONOXY-MYOGLOBIN (MUTANT L29W) REBINDING STRUCTURE AFTER PHOTOLYSIS AT T< 180K
Descriptor: CARBON MONOXIDE, MYOGLOBIN, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Ostermann, A, Waschipky, R, Parak, F.G, Nienhaus, G.U.
Deposit date:1999-12-19
Release date:2000-01-05
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Ligand binding and conformational motions in myoglobin.
Nature, 404, 2000
1DO1
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BU of 1do1 by Molmil
CARBONMONOXY-MYOGLOBIN MUTANT L29W AT 105K
Descriptor: CARBON MONOXIDE, MYOGLOBIN, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Ostermann, A, Waschipky, R, Parak, F.G, Nienhaus, G.U.
Deposit date:1999-12-18
Release date:2000-01-05
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Ligand binding and conformational motions in myoglobin.
Nature, 404, 2000
1DO4
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BU of 1do4 by Molmil
CARBONMONOXY-MYOGLOBIN (MUTANT L29W) AFTER PHOTOLYSIS AT T<180K
Descriptor: CARBON MONOXIDE, MYOGLOBIN, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Ostermann, A, Waschipky, R, Parak, F.G, Nienhaus, G.U.
Deposit date:1999-12-18
Release date:2000-01-05
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Ligand binding and conformational motions in myoglobin.
Nature, 404, 2000
2R5W
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Crystal structure of a bifunctional NMN adenylyltransferase/ADP ribose pyrophosphatase from Francisella tularensis
Descriptor: CHLORIDE ION, MAGNESIUM ION, Nicotinamide-nucleotide adenylyltransferase
Authors:Huang, N, Sorci, L, Zhang, X, Brautigan, C, Li, X, Raffaelli, N, Grishin, N, Osterman, A, Zhang, H.
Deposit date:2007-09-04
Release date:2008-03-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Bifunctional NMN Adenylyltransferase/ADP-Ribose Pyrophosphatase: Structure and Function in Bacterial NAD Metabolism.
Structure, 16, 2008
5HM5
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BU of 5hm5 by Molmil
Crystal structure of Topo-97, an N-terminal 97kDa fragment of topoisomerase V
Descriptor: Topoisomerase V
Authors:Rajan, R, Osterman, A, Mondragon, A.
Deposit date:2016-01-15
Release date:2016-03-09
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Methanopyrus kandleri topoisomerase V contains three distinct AP lyase active sites in addition to the topoisomerase active site.
Nucleic Acids Res., 44, 2016
1YB0
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BU of 1yb0 by Molmil
Structure of PlyL
Descriptor: PHOSPHATE ION, ZINC ION, prophage LambdaBa02, ...
Authors:Low, L.Y, Yang, C, Perego, M, Osterman, A, Liddington, R.C.
Deposit date:2004-12-18
Release date:2005-08-23
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:Structure and lytic activity of a Bacillus anthracis prophage endolysin
J.Biol.Chem., 280, 2005
4RPI
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BU of 4rpi by Molmil
Crystal Structure of Nicotinate Mononucleotide Adenylyltransferase from Mycobacterium tuberculosis
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, DIMETHYL SULFOXIDE, nicotinate-nucleotide adenylyltransferase
Authors:Rodionova, I, Zuccola, H, Sorci, L, Aleshin, A.E, Kazanov, M, Sergienko, E, Rubin, E, Locher, C, Osterman, A.
Deposit date:2014-10-30
Release date:2015-01-28
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.417 Å)
Cite:Mycobacterial nicotinate mononucleotide adenylyltransferase: structure, mechanism, and implications for drug discovery.
J. Biol. Chem., 290, 2015
2AR3
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BU of 2ar3 by Molmil
E90A mutant structure of PlyL
Descriptor: PHOSPHATE ION, ZINC ION, prophage lambdaba02, ...
Authors:Low, L.Y, Yang, C, Perego, M, Osterman, A, Liddington, R.C.
Deposit date:2005-08-19
Release date:2006-06-06
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure and lytic activity of a Bacillus anthracis prophage endolysin.
J.Biol.Chem., 280, 2005
3Q1Q
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Structure of a Bacterial Ribonuclease P Holoenzyme in Complex with tRNA
Descriptor: MAGNESIUM ION, PHOSPHATE ION, RNase P RNA, ...
Authors:Reiter, N.J, Osterman, A, Torres-Larios, A, Swinger, K.K, Pan, T, Mondragon, A.
Deposit date:2010-12-17
Release date:2011-03-09
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (3.8 Å)
Cite:Structure of a Bacterial Ribonuclease P Holoenzyme in Complex with tRNA.
Nature, 468, 2010
2QJT
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BU of 2qjt by Molmil
Crystal structure of a bifunctional NMN adenylyltransferase/ADP ribose pyrophosphatase complexed with AMP and MN ion from Francisella tularensis
Descriptor: ADENOSINE MONOPHOSPHATE, MANGANESE (II) ION, Nicotinamide-nucleotide adenylyltransferase
Authors:Huang, N, Sorci, L, Zhang, X, Brautigan, C, Raffaelli, N, Magni, G, Grishin, N.V, Osterman, A, Zhang, H.
Deposit date:2007-07-09
Release date:2008-03-04
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Bifunctional NMN Adenylyltransferase/ADP-Ribose Pyrophosphatase: Structure and Function in Bacterial NAD Metabolism.
Structure, 16, 2008
2QJO
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BU of 2qjo by Molmil
crystal structure of a bifunctional NMN adenylyltransferase/ADP ribose pyrophosphatase (NadM) complexed with ADPRP and NAD from Synechocystis sp.
Descriptor: ADENOSINE-5-DIPHOSPHORIBOSE, Bifunctional NMN adenylyltransferase/Nudix hydrolase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ...
Authors:Huang, N, Sorci, L, Zhang, X, Brautigan, C, Raffaelli, N, Magni, G, Grishin, N.V, Osterman, A, Zhang, H.
Deposit date:2007-07-08
Release date:2008-03-11
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Bifunctional NMN Adenylyltransferase/ADP-Ribose Pyrophosphatase: Structure and Function in Bacterial NAD Metabolism.
Structure, 16, 2008
1K4M
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BU of 1k4m by Molmil
Crystal structure of E.coli nicotinic acid mononucleotide adenylyltransferase complexed to deamido-NAD
Descriptor: CITRIC ACID, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, NaMN adenylyltransferase
Authors:Zhang, H, Zhou, T, Kurnasov, O, Cheek, S, Grishin, N.V, Osterman, A.
Deposit date:2001-10-08
Release date:2002-10-08
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structures of E. coli nicotinate mononucleotide adenylyltransferase and its complex with deamido-NAD.
Structure, 10, 2002
1OBR
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BU of 1obr by Molmil
CARBOXYPEPTIDASE T
Descriptor: CALCIUM ION, CARBOXYPEPTIDASE T, SULFATE ION, ...
Authors:Teplyakov, A, Polyakov, K, Obmolova, G, Osterman, A.
Deposit date:1996-06-22
Release date:1997-01-11
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of carboxypeptidase T from Thermoactinomyces vulgaris.
Eur.J.Biochem., 208, 1992
6XV4
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BU of 6xv4 by Molmil
Neutron structure of ferric ascorbate peroxidase-ascorbate complex
Descriptor: ASCORBIC ACID, Ascorbate peroxidase, POTASSIUM ION, ...
Authors:Kwon, H, Basran, J, Devos, J.M, Schrader, T.E, Ostermann, A, Blakeley, M.P, Raven, E.L, Moody, P.C.E.
Deposit date:2020-01-21
Release date:2020-03-18
Last modified:2024-05-01
Method:NEUTRON DIFFRACTION (1.9 Å), X-RAY DIFFRACTION
Cite:Visualizing the protons in a metalloenzyme electron proton transfer pathway.
Proc.Natl.Acad.Sci.USA, 117, 2020
6L27
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BU of 6l27 by Molmil
X-ray crystal structure of the mutant green fluorescent protein
Descriptor: Green fluorescent protein
Authors:Adachi, M, Shimizu, R, Shibazaki, C, Kagotani, Y, Ostermann, A, Schrader, T.E.
Deposit date:2019-10-02
Release date:2020-04-01
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (0.77 Å)
Cite:Direct Observation of the Protonation States in the Mutant Green Fluorescent Protein.
J Phys Chem Lett, 11, 2020
6L26
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BU of 6l26 by Molmil
Neutron crystal structure of the mutant green fluorescent protein (EGFP)
Descriptor: Green fluorescent protein, trideuteriooxidanium
Authors:Adachi, M, Shimizu, R, Shibazaki, C, Kagotani, Y, Ostermann, A, Schrader, T.E.
Deposit date:2019-10-02
Release date:2020-04-08
Last modified:2023-11-22
Method:NEUTRON DIFFRACTION (1.444 Å)
Cite:Direct Observation of the Protonation States in the Mutant Green Fluorescent Protein.
J Phys Chem Lett, 11, 2020
5A92
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BU of 5a92 by Molmil
15K X-ray structure with Cefotaxime: Exploring the Mechanism of beta- Lactam Ring Protonation in the Class A beta-lactamase Acylation Mechanism Using Neutron and X-ray Crystallography
Descriptor: BETA-LACTAMASE CTX-M-97, CEFOTAXIME, C3' cleaved, ...
Authors:Vandavasi, V.G, Weiss, K.L, Cooper, J.B, Erskine, P.T, Tomanicek, S.J, Ostermann, A, Schrader, T.E, Ginell, S.L, Coates, L.
Deposit date:2015-07-17
Release date:2015-12-16
Last modified:2018-10-03
Method:X-RAY DIFFRACTION (1.05 Å)
Cite:Exploring the Mechanism of Beta-Lactam Ring Protonation in the Class a Beta-Lactamase Acylation Mechanism Using Neutron and X-Ray Crystallography.
J.Med.Chem., 59, 2016
3Q1R
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BU of 3q1r by Molmil
Crystal structure of a bacterial RNase P holoenzyme in complex with TRNA and in the presence of 5' leader
Descriptor: MAGNESIUM ION, RNase P RNA, Ribonuclease P protein component, ...
Authors:Reiter, N.J, Ostermanm, A, Torres-Larios, A, Swinger, K.K, Pan, T, Mondragon, A.
Deposit date:2010-12-17
Release date:2011-03-09
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (4.21 Å)
Cite:Structure of a Bacterial Ribonuclease P Holoenzyme in Complex with tRNA.
Nature, 468, 2010
4XQW
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BU of 4xqw by Molmil
X-ray structure analysis of xylanase-N44E with MES at pH6.0
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Endo-1,4-beta-xylanase 2, IODIDE ION
Authors:Wan, Q, Park, J.M, Riccardi, D.M, Hanson, L.B, Fisher, Z, Smith, J.C, Ostermann, A, Schrader, T, Graham, D.E, Coates, L, Langan, P, Kovalevsky, A.Y.
Deposit date:2015-01-20
Release date:2015-09-23
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Direct determination of protonation states and visualization of hydrogen bonding in a glycoside hydrolase with neutron crystallography.
Proc.Natl.Acad.Sci.USA, 112, 2015

 

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