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PDB: 79 件

2LHK
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Structural analysis of a chaperone in type III secretion system
分子名称: L0052
著者Chen, L, Economou, A, Kalodimos, C.G.
登録日2011-08-11
公開日2011-12-28
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Structural instability tuning as a regulatory mechanism in protein-protein interactions.
Mol.Cell, 44, 2011
2FSF
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Escherichia coli SecA, the preprotein translocase dimeric ATPase
分子名称: Preprotein translocase secA subunit
著者Papanikolau, Y, Petratos, K, Economou, A.
登録日2006-01-23
公開日2007-01-16
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structure of dimeric SecA, the Escherichia coli preprotein translocase motor.
J.Mol.Biol., 366, 2007
2FSI
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Complex SecA:ADP from Escherichia coli
分子名称: ADENOSINE-5'-DIPHOSPHATE, Preprotein translocase secA subunit
著者Papanikolau, Y, Petratos, K, Economou, A.
登録日2006-01-23
公開日2007-01-16
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.11 Å)
主引用文献Structure of dimeric SecA, the Escherichia coli preprotein translocase motor.
J.Mol.Biol., 366, 2007
2IU3
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Crystal structures of transition state analogue inhibitors of inosine monophosphate cyclohydrolase
分子名称: 1,5-DIHYDROIMIDAZO[4,5-C][1,2,6]THIADIAZIN-4(3H)-ONE 2,2-DIOXIDE, BIFUNCTIONAL PURINE BIOSYNTHESIS PROTEIN PURH, POTASSIUM ION
著者Xu, L, Chong, Y, Hwang, I, D'Onofrio, A, Amore, K, Beardsley, G.P, Li, C, Olson, A.J, Boger, D.L, Wilson, I.A.
登録日2006-05-27
公開日2007-02-20
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Structure-based design, synthesis, evaluation, and crystal structures of transition state analogue inhibitors of inosine monophosphate cyclohydrolase.
J. Biol. Chem., 282, 2007
2K3H
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Structural determinants for Ca2+ and PIP2 binding by the C2A domain of rabphilin-3A
分子名称: CALCIUM ION, Rabphilin-3A
著者Coudevylle, N, Montaville, P, Leonov, A, Zweckstetter, M, Becker, S.
登録日2008-05-08
公開日2008-10-21
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Structural Determinants for Ca2+ and Phosphatidylinositol 4,5-Bisphosphate Binding by the C2A Domain of Rabphilin-3A.
J.Biol.Chem., 283, 2008
2DM5
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Thermodynamic Penalty Arising From Burial of a Ligand Polar Group Within a Hydrophobic Pocket of a Protein Receptor
分子名称: CADMIUM ION, Major Urinary Protein, OCTANE-1,8-DIOL
著者Barratt, E, Bronowska, A, Vondrasek, J, Bingham, R, Phillips, S, Homans, S.W.
登録日2006-04-20
公開日2006-10-17
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Thermodynamic penalty arising from burial of a ligand polar group within a hydrophobic pocket of a protein receptor
J.Mol.Biol., 362, 2006
2B1G
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BU of 2b1g by Molmil
Crystal structures of transition state analogue inhibitors of inosine monophosphate cyclohydrolase
分子名称: 7-(3,4-DIHYDROXY-5R-HYDROXYMETHYLTETRAHYDROFURAN-2-YL)-2,2-DIOXO-1,2R,3R,7-TETRAHYDRO-2L6-IMIDAZO[4,5-C][1,2,6]THIADIAZIN-4S-ONE, Bifunctional purine biosynthesis protein PURH, PHOSPHATE ION, ...
著者Xu, L, Chong, Y, Hwang, I, D'Onofrio, A, Amore, K, Beardsley, G.P, Li, C, Olson, A.J, Boger, D.L, Wilson, I.A.
登録日2005-09-15
公開日2006-11-21
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structure-based Design, Synthesis, Evaluation, and Crystal Structures of Transition State Analogue Inhibitors of Inosine Monophosphate Cyclohydrolase.
J.Biol.Chem., 282, 2007
7QWZ
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Full capsid of Saccharomyces cerevisiae virus L-BCLa
分子名称: Major capsid protein
著者Grybchuk, D, Prochazkova, M, Fuzik, T, Konovalovas, A, Serva, S, Yurchenko, V, Plevka, P.
登録日2022-01-26
公開日2022-09-07
最終更新日2024-07-17
実験手法ELECTRON MICROSCOPY (3.7 Å)
主引用文献Structures of L-BC virus and its open particle provide insight into Totivirus capsid assembly.
Commun Biol, 5, 2022
7QWX
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Empty capsid of Saccharomyces cerevisiae virus L-BCLa
分子名称: Major capsid protein
著者Grybchuk, D, Prochazkova, M, Fuzik, T, Konovalovas, A, Serva, S, Yurchenko, V, Plevka, P.
登録日2022-01-26
公開日2022-09-07
最終更新日2024-07-17
実験手法ELECTRON MICROSCOPY (2.9 Å)
主引用文献Structures of L-BC virus and its open particle provide insight into Totivirus capsid assembly.
Commun Biol, 5, 2022
7ZUF
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BU of 7zuf by Molmil
Saccharomyces cerevisiae L-BC virus, open particle, C5 reconstruction
分子名称: Major capsid protein
著者Grybchuk, D, Prochazkova, M, Fuzik, T, Konovalovas, A, Serva, S, Yurchenko, V, Plevka, P.
登録日2022-05-12
公開日2022-09-07
最終更新日2024-07-24
実験手法ELECTRON MICROSCOPY (10 Å)
主引用文献Structures of L-BC virus and its open particle provide insight into Totivirus capsid assembly.
Commun Biol, 5, 2022
7ZTS
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BU of 7zts by Molmil
Saccharomyces cerevisiae L-BC virus, open particle, asymmetric reconstruction
分子名称: Major capsid protein
著者Grybchuk, D, Prochazkova, M, Fuzik, T, Konovalovas, A, Serva, S, Yurchenko, V, Plevka, P.
登録日2022-05-11
公開日2022-09-21
最終更新日2024-07-24
実験手法ELECTRON MICROSCOPY (16 Å)
主引用文献Structures of L-BC virus and its open particle provide insight into Totivirus capsid assembly.
Commun Biol, 5, 2022
3WJC
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BU of 3wjc by Molmil
Crystal structure of mutant nitrobindin M75L/H76L/Q96C/M148L/H158L covalently linked with [Rh(Cp-Mal)(COD)] (NB4-Rh) from Arabidopsis thaliana
分子名称: BARIUM ION, UPF0678 fatty acid-binding protein-like protein At1g79260, [(1,2,5,6-eta)-cyclooctane-1,2,5,6-tetrayl]{(1,2,3,4,5-eta)-1-[2-(2,5-dioxopyrrolidin-1-yl)ethyl]cyclopentadienyl}rhodium
著者Mizohata, E, Fukumoto, K, Onoda, A, Bocola, M, Arlt, M, Inoue, T, Schwaneberg, U, Hayashi, T.
登録日2013-10-08
公開日2014-04-09
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献A Rhodium Complex-linked Hybrid Biocatalyst: Stereo-controlled Phenylacetylene Polymerization within an Engineered Protein Cavity
CHEMCATCHEM, 2014
3WJD
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Crystal structure of mutant nitrobindin F44W/M75L/H76L/Q96C/M148L/H158L (NB5) from Arabidopsis thaliana
分子名称: GLYCEROL, UPF0678 fatty acid-binding protein-like protein At1g79260
著者Mizohata, E, Fukumoto, K, Onoda, A, Bocola, M, Arlt, M, Inoue, T, Schwaneberg, U, Hayashi, T.
登録日2013-10-08
公開日2014-04-02
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.1 Å)
主引用文献A Rhodium Complex-linked Hybrid Biocatalyst: Stereo-controlled Phenylacetylene Polymerization within an Engineered Protein Cavity
CHEMCATCHEM, 2014
3WJB
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Crystal structure of mutant nitrobindin M75L/H76L/Q96C/M148L/H158L (NB4) from Arabidopsis thaliana
分子名称: BARIUM ION, HEXAETHYLENE GLYCOL, UPF0678 fatty acid-binding protein-like protein At1g79260
著者Mizohata, E, Fukumoto, K, Onoda, A, Bocola, M, Arlt, M, Inoue, T, Schwaneberg, U, Hayashi, T.
登録日2013-10-08
公開日2014-04-09
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献A Rhodium Complex-linked Hybrid Biocatalyst: Stereo-controlled Phenylacetylene Polymerization within an Engineered Protein Cavity
CHEMCATCHEM, 2014
3PSL
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BU of 3psl by Molmil
Fine-tuning the stimulation of MLL1 methyltransferase activity by a histone H3 based peptide mimetic
分子名称: N-alpha acetylated form of histone H3, WD repeat-containing protein 5
著者Avdic, V, Zhang, P, Lanouette, S, Voronova, A, Skerjanc, I, Couture, J.-F.
登録日2010-12-01
公開日2010-12-22
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Fine-tuning the stimulation of MLL1 methyltransferase activity by a histone H3-based peptide mimetic.
Faseb J., 25, 2011
3WJE
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BU of 3wje by Molmil
Crystal structure of mutant nitrobindin M75W/H76L/Q96C/M148L/H158L (NB6) from Arabidopsis thaliana
分子名称: UPF0678 fatty acid-binding protein-like protein At1g79260
著者Mizohata, E, Fukumoto, K, Onoda, A, Bocola, M, Arlt, M, Inoue, T, Schwaneberg, U, Hayashi, T.
登録日2013-10-08
公開日2014-04-02
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献A Rhodium Complex-linked Hybrid Biocatalyst: Stereo-controlled Phenylacetylene Polymerization within an Engineered Protein Cavity
CHEMCATCHEM, 2014
3WJF
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BU of 3wjf by Molmil
Crystal structure of mutant nitrobindin M75L/H76L/Q96C/V128W/M148L/H158L (NB9) from Arabidopsis thaliana
分子名称: UPF0678 fatty acid-binding protein-like protein At1g79260
著者Mizohata, E, Fukumoto, K, Onoda, A, Bocola, M, Arlt, M, Inoue, T, Schwaneberg, U, Hayashi, T.
登録日2013-10-08
公開日2014-04-02
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献A Rhodium Complex-linked Hybrid Biocatalyst: Stereo-controlled Phenylacetylene Polymerization within an Engineered Protein Cavity
CHEMCATCHEM, 2014
3WHN
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BU of 3whn by Molmil
Hemerythrin-like domain of DcrH I119H mutant (met)
分子名称: CALCIUM ION, CHLORO DIIRON-OXO MOIETY, Hemerythrin-like domain protein DcrH
著者Okamoto, Y, Onoda, A, Sugimoto, H, Takano, Y, Hirota, S, Kurtz Jr, D.M, Shiro, Y, Hayashi, T.
登録日2013-08-29
公開日2014-02-26
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献H2O2-dependent substrate oxidation by an engineered diiron site in a bacterial hemerythrin.
Chem.Commun.(Camb.), 50, 2014
3WAQ
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Hemerythrin-like domain of DcrH I119E mutant (met)
分子名称: Hemerythrin-like domain protein DcrH, MU-OXO-DIIRON
著者Okamoto, Y, Onoda, A, Sugimoto, H, Takano, Y, Hirota, S, Kurtz Jr, D.M, Shiro, Y, Hayashi, T.
登録日2013-05-07
公開日2014-03-19
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal structure, exogenous ligand binding, and redox properties of an engineered diiron active site in a bacterial hemerythrin
Inorg.Chem., 52, 2013
3WJG
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BU of 3wjg by Molmil
Crystal structure of mutant nitrobindin M75L/H76L/Q96C/M148W/H158L (NB10) from Arabidopsis thaliana
分子名称: GLYCEROL, UPF0678 fatty acid-binding protein-like protein At1g79260
著者Mizohata, E, Fukumoto, K, Onoda, A, Bocola, M, Arlt, M, Inoue, T, Schwaneberg, U, Hayashi, T.
登録日2013-10-08
公開日2014-04-02
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.1 Å)
主引用文献A Rhodium Complex-linked Hybrid Biocatalyst: Stereo-controlled Phenylacetylene Polymerization within an Engineered Protein Cavity
CHEMCATCHEM, 2014
2B1I
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crystal structures of transition state analogue inhibitors of inosine monophosphate cyclohydrolase
分子名称: Bifunctional purine biosynthesis protein PURH, POTASSIUM ION, [3,4-DIHYDROXY-5R-(2,2,4-TRIOXO-1,2R,3S,4R-TETRAHYDRO-2L6-IMIDAZO[4,5-C][1,2,6]THIADIAZIN-7-YL)TETRAHYDROFURAN-2-YL]METHYL DIHYDROGEN PHOSPHATE
著者Xu, L, Chong, Y, Hwang, I, D'Onofrio, A, Amore, K, Beardsley, G.P, Li, C, Olson, A.J, Boger, D.L, Wilson, I.A.
登録日2005-09-15
公開日2006-11-21
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (2.02 Å)
主引用文献Structure-based Design, Synthesis, Evaluation, and Crystal Structures of Transition State Analogue Inhibitors of Inosine Monophosphate Cyclohydrolase.
J.Biol.Chem., 282, 2007
2MLX
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BU of 2mlx by Molmil
NMR structure of E. coli Trigger Factor in complex with unfolded PhoA220-310
分子名称: Alkaline phosphatase, Trigger factor
著者Saio, T, Guan, X, Rossi, P, Economou, A, Kalodimos, C.G.
登録日2014-03-05
公開日2014-05-21
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Structural basis for protein antiaggregation activity of the trigger factor chaperone.
Science, 344, 2014
2MLY
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BU of 2mly by Molmil
NMR structure of E. coli Trigger Factor in complex with unfolded PhoA1-150
分子名称: Alkaline phosphatase, Trigger factor
著者Saio, T, Guan, X, Rossi, P, Economou, A, Kalodimos, C.G.
登録日2014-03-05
公開日2014-05-21
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Structural basis for protein antiaggregation activity of the trigger factor chaperone.
Science, 344, 2014
2M1N
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BU of 2m1n by Molmil
Solution structure of a chaperone in type III secretion system
分子名称: Type III secretion system filament chaperone CesA
著者Chen, L, Economou, A, Kalodimos, C.
登録日2012-12-03
公開日2013-04-10
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Substrate-Activated Conformational Switch on Chaperones Encodes a Targeting Signal in Type III Secretion.
Cell Rep, 3, 2013
4JVO
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BU of 4jvo by Molmil
Crystal structure of the double mutant (S112A, H303A) of B.anthracis mycrocine immunity protein (MccF) with alanyl sulfamoyl adenylates
分子名称: '5'-O-(N-(L-ALANYL)-SULFAMOYL)ADENOSINE, GLYCEROL, Microcin immunity protein MccF
著者Nocek, B, Tikhonov, A, Severinov, K, Anderson, W.F, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
登録日2013-03-25
公開日2013-06-12
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献Crystal structure of the double mutant (S112A, H303A) of B.anthracis mycrocine immunity protein (MccF) with alanyl sulfamoyl adenylates
TO BE PUBLISHED

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件を2024-09-04に公開中

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