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PDB: 42 件
5IKZ
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BU of 5ikz by Molmil
Glycerol bound structure of Obc1, a bifunctional enzyme for quorum sensing-dependent oxalogenesis
分子名称: GLYCEROL, MAGNESIUM ION, Oxalate biosynthetic component 1
著者Oh, J, Rhee, S.
登録日2016-03-04
公開日2016-06-01
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Structural Insights into an Oxalate-producing Serine Hydrolase with an Unusual Oxyanion Hole and Additional Lyase Activity
J.Biol.Chem., 291, 2016
2Q7F
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BU of 2q7f by Molmil
Crystal structure of YrrB: a TPR protein with an unusual peptide-binding site
分子名称: YrrB protein
著者Oh, J, Han, D, Kim, K, Lim, H.
登録日2007-06-06
公開日2007-08-07
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.49 Å)
主引用文献Crystal structure of YrrB: A TPR protein with an unusual peptide-binding site
Biochem.Biophys.Res.Commun., 360, 2007
5Z5M
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BU of 5z5m by Molmil
Crystal structure of (S)-allantoin synthase
分子名称: Predicted protein
著者Oh, J, Percudani, R, Rhee, S.
登録日2018-01-18
公開日2018-11-21
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Diatom Allantoin Synthase Provides Structural Insights into Natural Fusion Protein Therapeutics.
ACS Chem. Biol., 13, 2018
8SY6
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BU of 8sy6 by Molmil
E. coli DNA-directed RNA polymerase transcription elongation complex bound the unnatural dB-UTP base pair in the active site
分子名称: 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE, DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ...
著者Shan, Z, Lyumkis, D, Oh, J, Wang, D.
登録日2023-05-24
公開日2023-12-27
最終更新日2024-05-29
実験手法ELECTRON MICROSCOPY (3.28 Å)
主引用文献A unified Watson-Crick geometry drives transcription of six-letter expanded DNA alphabets by E. coli RNA polymerase.
Nat Commun, 14, 2023
8SY7
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BU of 8sy7 by Molmil
E. coli DNA-directed RNA polymerase transcription elongation complex bound the unnatural dB-STP base pair in the active site
分子名称: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ...
著者Shan, Z, Lyumkis, D, Oh, J, Wang, D.
登録日2023-05-24
公開日2023-12-27
実験手法ELECTRON MICROSCOPY (2.65 Å)
主引用文献A unified Watson-Crick geometry drives transcription of six-letter expanded DNA alphabets by E. coli RNA polymerase.
Nat Commun, 14, 2023
8SY5
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BU of 8sy5 by Molmil
E. coli DNA-directed RNA polymerase transcription elongation complex bound the unnatural dS-BTP base pair in the active site
分子名称: 2-oxo-2-hydroadenosine 5'-(tetrahydrogen triphosphate), DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ...
著者Shan, Z, Lyumkis, D, Oh, J, Wang, D.
登録日2023-05-24
公開日2023-12-27
実験手法ELECTRON MICROSCOPY (2.7 Å)
主引用文献A unified Watson-Crick geometry drives transcription of six-letter expanded DNA alphabets by E. coli RNA polymerase.
Nat Commun, 14, 2023
2E2E
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BU of 2e2e by Molmil
TPR domain of NrfG mediates the complex formation between heme lyase and formate-dependent nitrite reductase in Escherichia Coli O157:H7
分子名称: BETA-MERCAPTOETHANOL, Formate-dependent nitrite reductase complex nrfG subunit, IMIDAZOLE
著者Han, D, Kim, K, Oh, J, Park, J, Kim, Y.
登録日2006-11-11
公開日2007-10-23
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献TPR domain of NrfG mediates complex formation between heme lyase and formate-dependent nitrite reductase in Escherichia coli O157:H7.
Proteins, 70, 2008
8TXO
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BU of 8txo by Molmil
E. coli DNA-directed RNA polymerase transcription elongation complex bound to the unnatural dZ-PTP base pair in the active site
分子名称: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ...
著者Aiyer, S, Shan, Z, Oh, J, Wang, D, Tan, Y.Z, Lyumkis, D.
登録日2023-08-23
公開日2024-01-24
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献Overcoming resolution attenuation during tilted cryo-EM data collection.
Nat Commun, 15, 2024
8UKR
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BU of 8ukr by Molmil
RNA polymerase II elongation complex with Fapy-dG lesion soaking with ATP before chemistry
分子名称: ADENOSINE-5'-TRIPHOSPHATE, DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, ...
著者Hou, P, Oh, J, Wang, D.
登録日2023-10-15
公開日2024-04-24
実験手法X-RAY DIFFRACTION (3.78 Å)
主引用文献Molecular Mechanism of RNA Polymerase II Transcriptional Mutagenesis by the Epimerizable DNA Lesion, Fapy·dG.
J.Am.Chem.Soc., 146, 2024
8UKU
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RNA polymerase II elongation complex with Fapy-dG lesion with CMP added
分子名称: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ...
著者Hou, P, Oh, J, Wang, D.
登録日2023-10-15
公開日2024-04-24
実験手法X-RAY DIFFRACTION (3.6 Å)
主引用文献Molecular Mechanism of RNA Polymerase II Transcriptional Mutagenesis by the Epimerizable DNA Lesion, Fapy·dG.
J.Am.Chem.Soc., 146, 2024
8UKT
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BU of 8ukt by Molmil
RNA polymerase II elongation complex with Fapy-dG lesion with AMP added
分子名称: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ...
著者Hou, P, Oh, J, Wang, D.
登録日2023-10-15
公開日2024-04-24
実験手法X-RAY DIFFRACTION (3.6 Å)
主引用文献Molecular Mechanism of RNA Polymerase II Transcriptional Mutagenesis by the Epimerizable DNA Lesion, Fapy·dG.
J.Am.Chem.Soc., 146, 2024
8UKQ
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BU of 8ukq by Molmil
RNA polymerase II elongation complex with Fapy-dG lesion in apo state
分子名称: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ...
著者Hou, P, Oh, J, Wang, D.
登録日2023-10-15
公開日2024-04-24
実験手法X-RAY DIFFRACTION (3.5 Å)
主引用文献Molecular Mechanism of RNA Polymerase II Transcriptional Mutagenesis by the Epimerizable DNA Lesion, Fapy·dG.
J.Am.Chem.Soc., 146, 2024
8UKS
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BU of 8uks by Molmil
RNA polymerase II elongation complex with Fapy-dG lesion soaking with CTP before chemistry
分子名称: CYTIDINE-5'-TRIPHOSPHATE, DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, ...
著者Hou, P, Oh, J, Wang, D.
登録日2023-10-15
公開日2024-04-24
実験手法X-RAY DIFFRACTION (3.4 Å)
主引用文献Molecular Mechanism of RNA Polymerase II Transcriptional Mutagenesis by the Epimerizable DNA Lesion, Fapy·dG.
J.Am.Chem.Soc., 146, 2024
6ILR
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BU of 6ilr by Molmil
Structure of Arabidopsis thaliana Ribokinase in unligand form
分子名称: Ribokinase, SODIUM ION, TETRAETHYLENE GLYCOL
著者Kang, P, Oh, J, Rhee, S.
登録日2018-10-19
公開日2019-03-13
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.972 Å)
主引用文献Crystal structure and mutational analyses of ribokinase from Arabidopsis thaliana.
J. Struct. Biol., 206, 2019
6ILS
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BU of 6ils by Molmil
Structure of Arabidopsis thaliana Ribokinase complexed with Ribose and ATP
分子名称: ADENOSINE-5'-TRIPHOSPHATE, Ribokinase, SODIUM ION, ...
著者Kang, P, Oh, J, Rhee, S.
登録日2018-10-19
公開日2019-03-13
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal structure and mutational analyses of ribokinase from Arabidopsis thaliana.
J. Struct. Biol., 206, 2019
6ILT
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BU of 6ilt by Molmil
Structure of Arabidopsis thaliana Ribokinase complexed with ATP and Magnesium ion
分子名称: ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, Ribokinase, ...
著者Kang, P, Oh, J, Rhee, S.
登録日2018-10-19
公開日2019-03-13
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal structure and mutational analyses of ribokinase from Arabidopsis thaliana.
J. Struct. Biol., 206, 2019
2PL2
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BU of 2pl2 by Molmil
Crystal structure of TTC0263: a thermophilic TPR protein in Thermus thermophilus HB27
分子名称: Hypothetical conserved protein TTC0263
著者Lim, H, Kim, K, Han, D, Oh, J.
登録日2007-04-18
公開日2008-03-04
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Crystal structure of TTC0263, a thermophilic TPR protein from Thermus thermophilus HB27.
Mol.Cell, 24, 2007
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