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PDB: 136 results

8BWT
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BU of 8bwt by Molmil
Structure of a symmetrical internal loop motif with three consecutive U:U mismatches from stem-loop 1 in the 3'-UTR of the SARS-CoV2 genomic RNA
Descriptor: RNA (26-MER)
Authors:Voegele, J, Duchardt-Ferner, E, Schwalbe, H, Woehnert, J.
Deposit date:2022-12-07
Release date:2023-08-30
Last modified:2024-07-03
Method:SOLUTION NMR
Cite:Structure of an internal loop motif with three consecutive U•U mismatches from stem-loop 1 in the 3'-UTR of the SARS-CoV-2 genomic RNA.
Nucleic Acids Res., 52, 2024
8PFA
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BU of 8pfa by Molmil
X-ray structure of the Thermus thermophilus K167R mutant of the PilF-GSPIIB domain in the c-di-GMP bound state
Descriptor: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), ACETATE ION, SULFATE ION, ...
Authors:Neissner, K, Woehnert, J.
Deposit date:2023-06-15
Release date:2024-06-26
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:X-ray structure of the Thermus thermophilus K167R mutant of the PilF-GSPIIB domain in the c-di-GMP bound state
To Be Published
7JGX
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BU of 7jgx by Molmil
Solution NMR structure of neuroVAL, a derived peptide from wasp
Descriptor: neuroVAL derived peptide ILE-PHE-TRP-LEU-PHE-ARG-GLY-LYS-ALA-ASP-VAL-ALA-LEU-NH2
Authors:Muller, J.A.I, Craik, D.J, Koehbach, J.
Deposit date:2020-07-20
Release date:2020-12-16
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Antimicrobial and Anticancer Properties of Synthetic Peptides Derived from the Wasp Parachartergus fraternus.
Chembiochem, 22, 2021
7JHF
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BU of 7jhf by Molmil
Solution NMR structure of protonectin-F, a derived peptide from wasp
Descriptor: Protonectin-F derived peptide ILE-PHE-GLY-THR-ILE-LEU-GLY-PHE-LEU-LYS-GLY-LEU-NH2
Authors:Muller, J.A.I, Craik, D.J, Koehbach, J.
Deposit date:2020-07-20
Release date:2020-12-16
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Antimicrobial and Anticancer Properties of Synthetic Peptides Derived from the Wasp Parachartergus fraternus.
Chembiochem, 22, 2021
7JGY
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BU of 7jgy by Molmil
Solution NMR structure of protonectin, a peptide from wasp
Descriptor: Protonectin peptide ILE-LEU-GLY-THR-ILE-LEU-GLY-LEU-LEU-LYS-GLY-LEU-NH2
Authors:Muller, J.A.I, Craik, D.J, Koehbach, J.
Deposit date:2020-07-20
Release date:2020-12-16
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Antimicrobial and Anticancer Properties of Synthetic Peptides Derived from the Wasp Parachartergus fraternus.
Chembiochem, 22, 2021
7ABB
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BU of 7abb by Molmil
The truncated structure of the Bottromycin biosynthetic protein SalCYP
Descriptor: HEME C, SalCYP truncation
Authors:Adam, S, Koehnke, J.
Deposit date:2020-09-07
Release date:2020-12-02
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.50004339 Å)
Cite:Characterization of the Stereoselective P450 Enzyme BotCYP Enables the In Vitro Biosynthesis of the Bottromycin Core Scaffold.
J.Am.Chem.Soc., 142, 2020
8PDK
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BU of 8pdk by Molmil
X-ray structure of the Thermus thermophilus PilF-GSPIIB domain in the c-di-GMP bound state
Descriptor: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), ACETATE ION, SULFATE ION, ...
Authors:Neissner, K, Woehnert, J.
Deposit date:2023-06-12
Release date:2024-06-26
Method:X-RAY DIFFRACTION (2 Å)
Cite:X-ray structure of the PilF-GSPIIB domain in the c-di-GMP bound state
To Be Published
8PE0
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BU of 8pe0 by Molmil
X-ray structure of the Thermus thermophilus K167L mutant of the PilF-GSPIIB domain in the c-di-GMP bound state
Descriptor: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), ACETATE ION, SULFATE ION, ...
Authors:Neissner, K, Woehnert, J.
Deposit date:2023-06-13
Release date:2024-06-26
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:X-ray structure of the K167L mutant of PilF-GSPIIB domain in the c-di-GMP bound state
To Be Published
3RKF
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BU of 3rkf by Molmil
Crystal structure of guanine riboswitch C61U/G37A double mutant bound to thio-guanine
Descriptor: 2-amino-1,9-dihydro-6H-purine-6-thione, COBALT HEXAMMINE(III), Guanine riboswitch
Authors:Buck, J, Wacker, A, Warkentin, E, Woehnert, J, Wirmer-Bartoschek, J, Schwalbe, H.
Deposit date:2011-04-18
Release date:2011-08-17
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Influence of ground-state structure and Mg2+ binding on folding kinetics of the guanine-sensing riboswitch aptamer domain.
Nucleic Acids Res., 39, 2011
1B75
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BU of 1b75 by Molmil
SOLUTION STRUCTURE OF RIBOSOMAL PROTEIN L25 FROM ESCHERICHIA COLI
Descriptor: PROTEIN (50S RIBOSOMAL PROTEIN L25)
Authors:Stoldt, M, Woehnert, J, Goerlach, M, Brown, L.R.
Deposit date:1999-01-27
Release date:2000-01-26
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:The NMR structure of Escherichia coli ribosomal protein L25 shows homology to general stress proteins and glutaminyl-tRNA synthetases.
EMBO J., 17, 1998
6E69
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BU of 6e69 by Molmil
Ortho-substituted phenyl sulfonyl fluoride and fluorosulfate as potent elastase inhibitory fragments
Descriptor: 2-(fluorosulfonyl)benzene-1-sulfonic acid, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Wolan, D.W, Woehl, J.L, Kitamura, S.
Deposit date:2018-07-24
Release date:2019-07-24
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.33 Å)
Cite:SuFEx-enabled, agnostic discovery of covalent inhibitors of human neutrophil elastase.
Proc.Natl.Acad.Sci.USA, 116, 2019
1ETJ
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BU of 1etj by Molmil
AZURIN MUTANT WITH MET 121 REPLACED BY GLU
Descriptor: AZURIN, COPPER (II) ION
Authors:Karlsson, B.G, Tsai, L.-C, Nar, H, Sanders-Loehr, J, Bonander, N, Langer, V, Sjolin, L.
Deposit date:1997-01-11
Release date:1997-04-21
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:X-ray structure determination and characterization of the Pseudomonas aeruginosa azurin mutant Met121Glu.
Biochemistry, 36, 1997
5C5X
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BU of 5c5x by Molmil
CRYSTAL STRUCTURE OF THE S156E MUTANT OF HUMAN AQUAPORIN 5
Descriptor: Aquaporin-5, O-[(S)-{[(2S)-2-(hexanoyloxy)-3-(tetradecanoyloxy)propyl]oxy}(hydroxy)phosphoryl]-D-serine
Authors:Kitchen, P, Oeberg, F, Sjoehamn, J, Hedfalk, K, Bill, R.M, Conner, A.C, Conner, M.T, Toernroth-Horsefield, S.
Deposit date:2015-06-22
Release date:2015-12-02
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Plasma Membrane Abundance of Human Aquaporin 5 Is Dynamically Regulated by Multiple Pathways.
Plos One, 10, 2015
4ERK
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BU of 4erk by Molmil
THE COMPLEX STRUCTURE OF THE MAP KINASE ERK2/OLOMOUCINE
Descriptor: EXTRACELLULAR REGULATED KINASE 2, OLOMOUCINE, SULFATE ION
Authors:Wang, Z, Canagarajah, B, Boehm, J.C, Cobb, M.H, Young, P.R, Abdel-Meguid, S, Adams, J.L, Goldsmith, E.J.
Deposit date:1998-07-09
Release date:1999-07-22
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural basis of inhibitor selectivity in MAP kinases.
Structure, 6, 1998
6EWU
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BU of 6ewu by Molmil
Solution Structure of Rhabdopeptide NRPS Docking Domain Kj12C-NDD
Descriptor: NRPS Kj12C-NDD
Authors:Hacker, C, Cai, X, Kegler, C, Zhao, L, Weickhmann, A.K, Bode, H.B, Woehnert, J.
Deposit date:2017-11-06
Release date:2018-10-31
Last modified:2024-06-19
Method:SOLID-STATE NMR
Cite:Structure-based redesign of docking domain interactions modulates the product spectrum of a rhabdopeptide-synthesizing NRPS.
Nat Commun, 9, 2018
3ELM
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BU of 3elm by Molmil
Crystal Structure of MMP-13 Complexed with Inhibitor 24f
Descriptor: (2R)-({[5-(4-ethoxyphenyl)thiophen-2-yl]sulfonyl}amino){1-[(1-methylethoxy)carbonyl]piperidin-4-yl}ethanoic acid, CALCIUM ION, Collagenase 3, ...
Authors:Kulathila, R, Monovich, L, Koehn, J.
Deposit date:2008-09-22
Release date:2009-07-21
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Discovery of potent, selective, and orally active carboxylic acid based inhibitors of matrix metalloproteinase-13
J.Med.Chem., 52, 2009
6EWS
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BU of 6ews by Molmil
Solution Structure of Rhabdopeptide NRPS Docking Domain Kj12A-NDD
Descriptor: NRPS Kj12A-NDD
Authors:Hacker, C, Cai, X, Kegler, C, Zhao, L, Weickhmann, A.K, Bode, H.B, Woehnert, J.
Deposit date:2017-11-06
Release date:2018-10-31
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:Structure-based redesign of docking domain interactions modulates the product spectrum of a rhabdopeptide-synthesizing NRPS.
Nat Commun, 9, 2018
6EWV
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BU of 6ewv by Molmil
Solution Structure of Docking Domain Complex of RXP NRPS: Kj12C NDD - Kj12B CDD
Descriptor: NRPS Kj12C-NDD, NRPS Kj12B-CDD
Authors:Hacker, C, Cai, X, Kegler, C, Zhao, L, Weickhmann, A.K, Bode, H.B, Woehnert, J.
Deposit date:2017-11-06
Release date:2018-10-31
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:Structure-based redesign of docking domain interactions modulates the product spectrum of a rhabdopeptide-synthesizing NRPS.
Nat Commun, 9, 2018
7PD7
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BU of 7pd7 by Molmil
Crocagin methyl transferase CgnL
Descriptor: GLYCEROL, Methyltransferase, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Zheng, D, Koehnke, J.
Deposit date:2021-08-04
Release date:2022-08-17
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:Unusual peptide-binding proteins guide pyrroloindoline alkaloid formation in crocagin biosynthesis.
Nat.Chem., 15, 2023
2X5N
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BU of 2x5n by Molmil
Crystal Structure of the SpRpn10 VWA domain
Descriptor: 26S PROTEASOME REGULATORY SUBUNIT RPN10, SULFATE ION
Authors:Riedinger, C, Boehringer, J, Trempe, J.-F, Lowe, E.D, Brown, N.R, Gehring, K, Noble, M.E.M, Gordon, C, Endicott, J.A.
Deposit date:2010-02-10
Release date:2010-08-25
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:The Structure of Rpn10 and its Interactions with Polyubiquitin Chains and the Proteasome Subunit Rpn12.
J.Biol.Chem., 285, 2010
6EWT
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BU of 6ewt by Molmil
Solution Structure of Rhabdopeptide NRPS Docking Domain Kj12B-NDD
Descriptor: NRPS Kj12B-NDD
Authors:Hacker, C, Cai, X, Kegler, C, Zhao, L, Weickhmann, A.K, Bode, H.B, Woehnert, J.
Deposit date:2017-11-06
Release date:2018-10-31
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:Structure-based redesign of docking domain interactions modulates the product spectrum of a rhabdopeptide-synthesizing NRPS.
Nat Commun, 9, 2018
1BMK
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BU of 1bmk by Molmil
THE COMPLEX STRUCTURE OF THE MAP KINASE P38/SB218655
Descriptor: 4-(FLUOROPHENYL)-1-CYCLOPROPYLMETHYL-5-(2-AMINO-4-PYRIMIDINYL)IMIDAZOLE, PROTEIN (MAP KINASE P38)
Authors:Wang, Z, Canagarajah, B, Boehm, J.C, Kassis, S, Cobb, M.H, Young, P.R, Abdel-Meguid, S, Adams, J.L, Goldsmith, E.J.
Deposit date:1998-07-23
Release date:1999-07-23
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural basis of inhibitor selectivity in MAP kinases.
Structure, 6, 1998
6TRP
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BU of 6trp by Molmil
Solution Structure of Docking Domain Complex of Pax NRPS: PaxC NDD - PaxB CDD
Descriptor: Peptide synthetase XpsB,Peptide synthetase XpsB
Authors:Watzel, J, Hacker, C, Duchardt-Ferner, E, Bode, H.B, Woehnert, J.
Deposit date:2019-12-19
Release date:2020-08-12
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:A New Docking Domain Type in the Peptide-Antimicrobial-Xenorhabdus Peptide Producing Nonribosomal Peptide Synthetase fromXenorhabdus bovienii.
Acs Chem.Biol., 15, 2020
2R29
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BU of 2r29 by Molmil
Neutralization of dengue virus by a serotype cross-reactive antibody elucidated by cryoelectron microscopy and x-ray crystallography
Descriptor: Envelope protein E, Heavy chain of Fab 1A1D-2, Light chain of Fab 1A1D-2
Authors:Lok, S.M, Kostyuchenko, V.K, Nybakken, G.E, Holdaway, H.A, Battisti, A.J, Sukupolvi-petty, S, Sedlak, D, Fremont, D.H, Chipman, P.R, Roehrig, J.T, Diamond, M.S, Kuhn, R.J, Rossmann, M.G.
Deposit date:2007-08-24
Release date:2007-12-25
Last modified:2018-01-24
Method:X-RAY DIFFRACTION (3 Å)
Cite:Binding of a neutralizing antibody to dengue virus alters the arrangement of surface glycoproteins.
Nat.Struct.Mol.Biol., 15, 2008
2R69
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BU of 2r69 by Molmil
Crystal structure of Fab 1A1D-2 complexed with E-DIII of Dengue virus at 3.8 angstrom resolution
Descriptor: Heavy chain of 1A1D-2, Light chain of 1A1D-2, Major envelope protein E
Authors:Lok, S.M, Kostyuchenko, V.K, Nybakken, G.E, Holdaway, H.A, Battisti, A.J, Sukupolvi-petty, S, Sedlak, D, Fremont, D.H, Chipman, P.R, Roehrig, J.T, Diamond, M.S, Kuhn, R.J, Rossmann, M.G.
Deposit date:2007-09-05
Release date:2007-12-25
Last modified:2018-01-24
Method:X-RAY DIFFRACTION (3.8 Å)
Cite:Binding of a neutralizing antibody to dengue virus alters the arrangement of surface glycoproteins.
Nat.Struct.Mol.Biol., 15, 2008

224201

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