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PDB: 359 results

1WY1
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BU of 1wy1 by Molmil
Crystal Structure of the PH0671 protein from Pyrococcus horikoshii OT3
Descriptor: MAGNESIUM ION, hypothetical protein PH0671
Authors:Mizutani, H, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-02-04
Release date:2005-02-22
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structure of the PH0671 protein from Pyrococcus horikoshii OT3
To be Published
1WWZ
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BU of 1wwz by Molmil
Crystal structure of PH1933 from Pyrococcus horikoshii OT3
Descriptor: ACETYL COENZYME *A, hypothetical protein PH1933
Authors:Asada, Y, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-01-19
Release date:2005-02-01
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Crystal structure of PH1933 from Pyrococcus horikoshii OT3
To be Published
1WZN
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BU of 1wzn by Molmil
Crystal Structure of the SAM-dependent methyltransferase from Pyrococcus horikoshii OT3
Descriptor: MAGNESIUM ION, S-ADENOSYL-L-HOMOCYSTEINE, SAM-dependent methyltransferase, ...
Authors:Mizutani, H, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-03-08
Release date:2006-03-14
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal Structure of the SAM-dependent methyltransferase from Pyrococcus horikoshii OT3
To be Published
1WXD
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BU of 1wxd by Molmil
Crystal Structure of Shikimate 5-Dehydrogenase (AroE) from Thermus Thermophilus HB8
Descriptor: ACETATE ION, SULFATE ION, shikimate 5-dehydrogenase
Authors:Bagautdinov, B, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-01-21
Release date:2005-02-01
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal Structures of Shikimate Dehydrogenase AroE from Thermus thermophilus HB8 and its Cofactor and Substrate Complexes: Insights into the Enzymatic Mechanism
J.Mol.Biol., 373, 2007
1X1Q
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Crystal structure of tryptophan synthase beta chain from Thermus thermophilus HB8
Descriptor: CHLORIDE ION, tryptophan synthase beta chain
Authors:Asada, Y, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-04-11
Release date:2006-08-01
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of tryptophan synthase beta chain from Thermus thermophilus HB8
To be Published
1WPY
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BU of 1wpy by Molmil
Crystal Structure Of Biotin-(Acetyl-CoA-Carboxylase) ligase From Pyrococcus Horikoshii Ot3 in complex with biotin
Descriptor: BIOTIN, biotin--[acetyl-CoA-carboxylase] ligase
Authors:Bagautdinov, B, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-09-17
Release date:2005-10-04
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal Structures of Biotin Protein Ligase from Pyrococcus horikoshii OT3 and its Complexes: Structural Basis of Biotin Activation
J.Mol.Biol., 353, 2005
1X1K
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Host-guest peptide (Pro-Pro-Gly)4-(Pro-alloHyp-Gly)-(Pro-Pro-Gly)4
Descriptor: Host-guest peptide (Pro-Pro-Gly)4-(Pro-alloHyp-Gly)-(Pro-Pro-Gly)4
Authors:Jiravanichanun, N, Hongo, C, Wu, G, Noguchi, K, Okuyama, K, Nishino, N, Silva, T.
Deposit date:2005-04-05
Release date:2005-06-14
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Unexpected puckering of hydroxyproline in the guest triplets, hyp-pro-gly and pro-allohyp-gly sandwiched between pro-pro-gly sequence
Chembiochem, 6, 2005
1ITT
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BU of 1itt by Molmil
Average Crystal Structure of (Pro-Pro-Gly)9 at 1.0 angstroms Resolution
Descriptor: COLLAGEN TRIPLE HELIX
Authors:Hongo, C, Nagarajan, V, Noguchi, K, Kamitori, S, Okuyama, K, Tanaka, Y, Nishino, N.
Deposit date:2002-02-03
Release date:2003-02-03
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1 Å)
Cite:Average Crystal Structure of (Pro-Pro-Gly)9 at 1.0 angstroms Resolution
Plym.J., 33, 2001
4R16
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BU of 4r16 by Molmil
Structure of UDP-D-MAnNAc dehdrogeanse from Pyrococcus horikoshii
Descriptor: (2S,3S,4R,5S,6R)-5-acetamido-6-[[[(2R,3S,4R,5R)-5-[2,4-bis(oxidanylidene)pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-3,4-bis(oxidanyl)oxane-2-carboxylic acid, 418aa long hypothetical UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase
Authors:Pampa, K.J, Lokanath, N.K, Rai, R.V, Kunishima, N.
Deposit date:2014-08-04
Release date:2015-10-14
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Structure of UDP-D-MAnNAc dehdrogeanse from Pyrococcus horikoshii
To be Published
4MRO
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BU of 4mro by Molmil
Human GKRP bound to AMG-5980 and S6P
Descriptor: 2-(4-{4-[(6-aminopyridin-3-yl)sulfonyl]piperazin-1-yl}phenyl)-1,1,1,3,3,3-hexafluoropropan-2-ol, D-SORBITOL-6-PHOSPHATE, GLYCEROL, ...
Authors:St Jean, D.J, Ashton, K.S, Bartberger, M.D, Chen, J, Chmait, S, Cupples, R, Galbreath, E, Helmering, J, Jordan, S.R, Liu, L, Kunz, K, Michelsen, K, Nishimura, N, Pennington, L.D, Poon, S.F, Sivits, G, Stec, M.M, Tamayo, N, Van, G, Yang, K, Norman, M.H, Fotsch, C, LLoyd, D.J, Hale, C.
Deposit date:2013-09-17
Release date:2014-05-07
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Small molecule disruptors of the glucokinase-glucokinase regulatory protein interaction: 2. Leveraging structure-based drug design to identify analogues with improved pharmacokinetic profiles.
J.Med.Chem., 57, 2014
1XKV
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BU of 1xkv by Molmil
Crystal Structure Of ATP-Dependent Phosphoenolpyruvate Carboxykinase From Thermus thermophilus HB8
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, ATP-dependent phosphoenolpyruvate carboxykinase, CALCIUM ION, ...
Authors:Sugahara, M, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-09-29
Release date:2005-10-11
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure of ATP-dependent phosphoenolpyruvate carboxykinase from Thermus thermophilus HB8 showing the structural basis of induced fit and thermostability.
Acta Crystallogr.,Sect.D, 61, 2005
3FCU
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BU of 3fcu by Molmil
Structure of headpiece of integrin aIIBb3 in open conformation
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CACODYLATE ION, CALCIUM ION, ...
Authors:Zhu, J, Luo, B.-H, Xiao, T, Zhang, C, Nishida, N, Springer, T.A.
Deposit date:2008-11-22
Release date:2009-01-20
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structure of a complete integrin ectodomain in a physiologic resting state and activation and deactivation by applied forces.
Mol.Cell, 32, 2008
3FCS
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BU of 3fcs by Molmil
Structure of complete ectodomain of integrin aIIBb3
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ...
Authors:Zhu, J, Luo, B.-H, Xiao, T, Zhang, C, Nishida, N, Springer, T.A.
Deposit date:2008-11-22
Release date:2009-01-20
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Structure of a complete integrin ectodomain in a physiologic resting state and activation and deactivation by applied forces.
Mol.Cell, 32, 2008
3K72
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BU of 3k72 by Molmil
Structure of integrin alphaX beta2
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ...
Authors:Xie, C, Zhu, J, Chen, X, Mi, L, Nishida, N, Springer, T.A.
Deposit date:2009-10-11
Release date:2010-01-12
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (3.7 Å)
Cite:Structure of an integrin with an alphaI domain, complement receptor type 4.
Embo J., 29, 2010
3K71
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Structure of integrin alphaX beta2 ectodomain
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ...
Authors:Xie, C, Zhu, J, Chen, X, Mi, L, Nishida, N, Springer, T.A.
Deposit date:2009-10-11
Release date:2010-01-12
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (3.95 Å)
Cite:Structure of an integrin with an alphaI domain, complement receptor type 4.
Embo J., 29, 2010
3K6S
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BU of 3k6s by Molmil
Structure of integrin alphaXbeta2 ectodomain
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ...
Authors:Xie, C, Zhu, J, Chen, X, Mi, L, Nishida, N, Springer, T.A.
Deposit date:2009-10-09
Release date:2010-01-12
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Structure of an integrin with an alphaI domain, complement receptor type 4.
Embo J., 29, 2010
1ZJJ
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BU of 1zjj by Molmil
Crystal structure of hypothetical protein PH1952 from Pyrococcus horikoshii OT3
Descriptor: MAGNESIUM ION, hypothetical protein PH1952
Authors:Yamamoto, H, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-04-29
Release date:2006-04-29
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal structure of hypothetical protein PH1952 from Pyrococcus horikoshii OT3
To be Published
1YYA
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BU of 1yya by Molmil
Crystal structure of TT0473, putative Triosephosphate Isomerase from Thermus thermophilus HB8
Descriptor: PHOSPHATE ION, SODIUM ION, triosephosphate isomerase
Authors:Yamamoto, H, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-02-24
Release date:2005-03-15
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of TT0473, putative Triosephosphate Isomerase from Thermus thermophilus HB8
To be Published
1ZZG
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BU of 1zzg by Molmil
Crystal structure of hypothetical protein TT0462 from Thermus thermophilus HB8
Descriptor: glucose-6-phosphate isomerase
Authors:Yamamoto, H, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-06-14
Release date:2006-06-14
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal structure of hypothetical protein TT0462 from Thermus thermophilus HB8
To be Published
1ZIB
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BU of 1zib by Molmil
REDUCED PSEUDOAZURIN
Descriptor: COPPER (II) ION, PSEUDOAZURIN
Authors:Inoue, T, Nishio, N, Hamanaka, S, Shimomura, T, Harada, S, Suzuki, S, Kohzuma, T, Shidara, S, Iwasaki, H, Kai, Y.
Deposit date:1996-04-09
Release date:1997-04-01
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystallization and preliminary X-ray studies on pseudoazurin from Achromobacter cycloclastes IAM1013.
J.Biochem.(Tokyo), 114, 1993
1ZIA
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BU of 1zia by Molmil
OXIDIZED PSEUDOAZURIN
Descriptor: COPPER (II) ION, PSEUDOAZURIN
Authors:Inoue, T, Nishio, N, Hamanaka, S, Shimomura, T, Harada, S, Suzuki, S, Kohzuma, T, Shidara, S, Iwasaki, H, Kai, Y.
Deposit date:1996-04-09
Release date:1997-04-01
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:Crystallization and preliminary X-ray studies on pseudoazurin from Achromobacter cycloclastes IAM1013.
J.Biochem.(Tokyo), 114, 1993
1TUO
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BU of 1tuo by Molmil
Crystal structure of putative phosphomannomutase from Thermus Thermophilus HB8
Descriptor: Putative phosphomannomutase
Authors:Misaki, S, Suzuki, S, Fujimoto, S, Sakurai, M, Kobayashi, M, Nishijima, K, Kunishima, N, Sugawara, M, Kuroishi, C, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-06-25
Release date:2005-08-09
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of putative phosphomannomutase from Thermus Thermophilus HB8
TO BE PUBLISHED
5GUA
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BU of 5gua by Molmil
Structure of biotin carboxyl carrier protein from pyrococcus horikoshi OT3 (delta N79) A138Y mutant
Descriptor: 149aa long hypothetical methylmalonyl-CoA decarboxylase gamma chain
Authors:Yamada, K, Kunishima, N, Matsuura, Y, Nakai, K, Naitow, H, Fukasawa, Y, Tomii, K.
Deposit date:2016-08-26
Release date:2017-08-30
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Designing better diffracting crystals of biotin carboxyl carrier protein from Pyrococcus horikoshii by a mutation based on the crystal-packing propensity of amino acids.
Acta Crystallogr D Struct Biol, 73, 2017
2RR8
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BU of 2rr8 by Molmil
Solution structure of calponin homology domain of IQGAP1
Descriptor: IQGAP1 protein
Authors:Umemoto, R, Nishida, N, Ogino, S, Shimada, I.
Deposit date:2010-06-09
Release date:2010-09-15
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:NMR structure of the calponin homology domain of human IQGAP1 and its implications for the actin recognition mode.
J.Biomol.Nmr, 48, 2010
5GU9
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BU of 5gu9 by Molmil
Structure of biotin carboxyl carrier protein from pyrococcus horikoshi OT3 (delta N79) A138I mutant
Descriptor: 149aa long hypothetical methylmalonyl-CoA decarboxylase gamma chain
Authors:Yamada, K, Kunishima, N, Matsuura, Y, Nakai, K, Naitow, H, Fukasawa, Y, Tomii, K.
Deposit date:2016-08-26
Release date:2017-08-30
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Designing better diffracting crystals of biotin carboxyl carrier protein from Pyrococcus horikoshii by a mutation based on the crystal-packing propensity of amino acids.
Acta Crystallogr D Struct Biol, 73, 2017

222036

数据于2024-07-03公开中

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