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PDB: 65 件
3IXL
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BU of 3ixl by Molmil
Crystal structure of the Gly74Cys-Cys188Ser mutant of arylmalonate decarboxylase in the liganded form
分子名称: 2-PHENYLACETIC ACID, Arylmalonate decarboxylase, GLYCEROL, ...
著者Nakasako, M, Obata, R.
登録日2009-09-04
公開日2010-02-23
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献Structural Basis for Inverting the Enantioselectivity of Arylmalonate Decarboxylase Revealed by the Structural Analysis of the Gly74Cys/Cys188Ser Mutant in the Liganded Form
Biochemistry, 49, 2010
3IXM
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BU of 3ixm by Molmil
Structure of the Gly74Cys mutant of arylmalonate decarboxylase in the sulfate ion associated form
分子名称: Arylmalonate decarboxylase, SULFATE ION
著者Nakasako, M, Obata, R.
登録日2009-09-04
公開日2010-02-23
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structural Basis for Inverting the Enantioselectivity of Arylmalonate Decarboxylase Revealed by the Structural Analysis of the Gly74Cys/Cys188Ser Mutant in the Liganded Form
Biochemistry, 49, 2010
2STD
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BU of 2std by Molmil
SCYTALONE DEHYDRATASE COMPLEXED WITH TIGHT-BINDING INHIBITOR CARPROPAMID
分子名称: ((1RS,3SR)-2,2-DICHLORO-N-[(R)-1-(4-CHLOROPHENYL)ETHYL]-1-ETHYL-3-METHYLCYCLOPROPANECARBOXAMIDE, SCYTALONE DEHYDRATASE, SULFATE ION
著者Nakasako, M, Motoyama, T, Kurahashi, Y, Yamaguchi, I.
登録日1997-12-21
公開日1999-02-16
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Cryogenic X-ray crystal structure analysis for the complex of scytalone dehydratase of a rice blast fungus and its tight-binding inhibitor, carpropamid: the structural basis of tight-binding inhibition.
Biochemistry, 37, 1998
3DTV
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BU of 3dtv by Molmil
Crystal structure of arylmalonate decarboxylase
分子名称: Arylmalonate decarboxylase, BETA-MERCAPTOETHANOL, GLYCEROL, ...
著者Nakasako, M, Obata, R, Miyamaoto, K, Ohta, H.
登録日2008-07-16
公開日2009-07-21
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structural Basis for Inverting the Enantioselectivity of Arylmalonate Decarboxylase Revealed by the Structural Analysis of the Gly74Cys/Cys188Ser Mutant in the Liganded Form
Biochemistry, 49, 2010
1DLF
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BU of 1dlf by Molmil
HIGH RESOLUTION CRYSTAL STRUCTURE OF THE FV FRAGMENT FROM AN ANTI-DANSYL SWITCH VARIANT ANTIBODY IGG2A(S) CRYSTALLIZED AT PH 5.25
分子名称: ANTI-DANSYL IMMUNOGLOBULIN IGG2A(S), SULFATE ION
著者Nakasako, M, Takahashi, H, Shimada, I, Arata, Y.
登録日1998-07-14
公開日1999-07-26
最終更新日2023-08-09
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献The pH-dependent structural variation of complementarity-determining region H3 in the crystal structures of the Fv fragment from an anti-dansyl monoclonal antibody.
J.Mol.Biol., 291, 1999
1EUZ
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BU of 1euz by Molmil
GLUTAMATE DEHYDROGENASE FROM THERMOCOCCUS PROFUNDUS IN THE UNLIGATED STATE
分子名称: GLUTAMATE DEHYDROGENASE, SULFATE ION
著者Nakasako, M.
登録日2000-04-19
公開日2001-04-25
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献Large-scale domain movements and hydration structure changes in the active-site cleft of unligated glutamate dehydrogenase from Thermococcus profundus studied by cryogenic X-ray crystal structure analysis and small-angle X-ray scattering.
Biochemistry, 40, 2001
3EIS
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BU of 3eis by Molmil
Crystal Structure of Arylmalonate Decarboxylase
分子名称: Arylmalonate decarboxylase, GLYCEROL, SULFATE ION
著者Nakasako, M, Obata, R, Miyamoto, K, Ohta, H.
登録日2008-09-17
公開日2009-09-22
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structural Basis of the Enantioselective Decarboxylation by Arylmalonate Decarboxylase
To be Published
2Z6D
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BU of 2z6d by Molmil
Crystal structure of LOV1 domain of phototropin2 from Arabidopsis thaliana
分子名称: FLAVIN MONONUCLEOTIDE, Phototropin-2
著者Nakasako, M, Matsuoka, D, Tokutomi, S.
登録日2007-07-29
公開日2008-07-29
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structural basis of the LOV1 dimerization of Arabidopsis phototropins 1 and 2
J.Mol.Biol., 381, 2008
2Z6C
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BU of 2z6c by Molmil
Crystal structure of LOV1 domain of phototropin1 from Arabidopsis thaliana
分子名称: FLAVIN MONONUCLEOTIDE, Phototropin-1
著者Nakasako, M, Matsuoka, D, Tokutomi, S.
登録日2007-07-29
公開日2008-07-29
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structural basis of the LOV1 dimerization of Arabidopsis phototropins 1 and 2
J.Mol.Biol., 381, 2008
2DLF
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BU of 2dlf by Molmil
HIGH RESOLUTION CRYSTAL STRUCTURE OF THE FV FRAGMENT FROM AN ANTI-DANSYL SWITCH VARIANT ANTIBODY IGG2A(S) CRYSTALLIZED AT PH 6.75
分子名称: PROTEIN (ANTI-DANSYL IMMUNOGLOBULIN IGG2A(S) (HEAVY CHAIN)), PROTEIN (ANTI-DANSYL IMMUNOGLOBULIN IGG2A(S)-KAPPA (LIGHT CHAIN)), SULFATE ION
著者Nakasako, M, Takahashi, H, Shimada, I, Arata, Y.
登録日1998-12-17
公開日1999-12-17
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献The pH-dependent structural variation of complementarity-determining region H3 in the crystal structures of the Fv fragment from an anti-dansyl monoclonal antibody.
J.Mol.Biol., 291, 1999
1WZ1
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BU of 1wz1 by Molmil
Crystal structure of the Fv fragment complexed with dansyl-lysine
分子名称: Ig heavy chain, Ig light chain, N~6~-{[5-(DIMETHYLAMINO)-1-NAPHTHYL]SULFONYL}-L-LYSINE
著者Nakasako, M, Oka, T, Mashumo, M, Takahashi, H, Shimada, I, Yamaguchi, Y, Kato, K, Arata, Y.
登録日2005-02-21
公開日2006-01-31
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Conformational dynamics of complementarity-determining region H3 of an anti-dansyl Fv fragment in the presence of its hapten
J.Mol.Biol., 351, 2005
1IDP
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BU of 1idp by Molmil
Crystal structure of scytalone dehydratase F162A mutant in the unligated state
分子名称: SCYTALONE DEHYDRATASE
著者Nakasako, M, Motoyama, T, Yamaguchi, I.
登録日2001-04-04
公開日2003-04-08
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献Crystallization of scytalone dehydratase F162A mutant in the unligated state and a preliminary X-ray diffraction study at 37 K
Acta Crystallogr.,Sect.D, 58, 2002
8ZNB
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BU of 8znb by Molmil
Cryo-EM structure of W89F mutated Glutamate dehydrogenase from Thermococcus profundus incorporating NADPH in the steady stage of reaction
分子名称: Glutamate dehydrogenase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
著者Wakabayashi, T, Nakasako, M.
登録日2024-05-26
公開日2024-06-12
実験手法ELECTRON MICROSCOPY (2.53 Å)
主引用文献Mechanism for drastic reduction in catalytic activity of Trp89Phe-mutated glutamate dehydrogenase revealed by crystal structure and cryoEM-sampling of metastable conformation in action
To Be Published
8ZNC
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BU of 8znc by Molmil
Cryo-EM structure of W89F mutated Glutamate dehydrogenase from Thermococcus profundus incorporating NADPH, AKG in the steady stage of reaction
分子名称: 2-OXOGLUTARIC ACID, AMMONIUM ION, Glutamate dehydrogenase, ...
著者Wakabayashi, T, Nakasako, M.
登録日2024-05-26
公開日2024-06-12
実験手法ELECTRON MICROSCOPY (2.41 Å)
主引用文献Mechanism for drastic reduction in catalytic activity of Trp89Phe-mutated glutamate dehydrogenase revealed by crystal structure and cryoEM-sampling of metastable conformation in action
To Be Published
8ZND
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BU of 8znd by Molmil
Cryo-EM structure of W89F mutated Glutamate dehydrogenase from Thermococcus profundus incorporating NADPH and a substrate in the steady stage of reaction
分子名称: Glutamate dehydrogenase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
著者Wakabayashi, T, Nakasako, M.
登録日2024-05-26
公開日2024-06-12
実験手法ELECTRON MICROSCOPY (2.53 Å)
主引用文献Mechanism for drastic reduction in catalytic activity of Trp89Phe-mutated glutamate dehydrogenase revealed by crystal structure and cryoEM-sampling of metastable conformation in action
To Be Published
8ZNG
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BU of 8zng by Molmil
Cryo-EM structure of W89F mutated Glutamate dehydrogenase from Thermococcus profundus in complex with NADPH and AKG in the steady stage of reaction
分子名称: 2-OXOGLUTARIC ACID, Glutamate dehydrogenase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
著者Wakabayashi, T, Nakasako, M.
登録日2024-05-26
公開日2024-06-12
実験手法ELECTRON MICROSCOPY (2.5 Å)
主引用文献Mechanism for drastic reduction in catalytic activity of Trp89Phe-mutated glutamate dehydrogenase revealed by crystal structure and cryoEM-sampling of metastable conformation in action
To Be Published
8ZNE
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BU of 8zne by Molmil
Cryo-EM structure of W89F mutated Glutamate dehydrogenase from Thermococcus profundus in complex with NADP and GLU in the steady stage of reaction
分子名称: GLUTAMIC ACID, Glutamate dehydrogenase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
著者Wakabayashi, T, Nakasako, M.
登録日2024-05-26
公開日2024-06-26
実験手法ELECTRON MICROSCOPY (2.64 Å)
主引用文献Mechanism for drastic reduction in catalytic activity of Trp89Phe-mutated glutamate dehydrogenase revealed by cryoEM-sampling metastable conformation in action
To Be Published
4XD7
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BU of 4xd7 by Molmil
Structure of thermophilic F1-ATPase inhibited by epsilon subunit
分子名称: ADENOSINE-5'-DIPHOSPHATE, ATP synthase epsilon chain, ATP synthase gamma chain, ...
著者SHIRAKIHARA, Y, SHIRATORI, A, TANIKAWA, H, NAKASAKO, M, YOSHIDA, M, SUZUKI, T.
登録日2014-12-19
公開日2015-08-26
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (3.9 Å)
主引用文献Structure of a thermophilic F1 -ATPase inhibited by an epsilon-subunit: deeper insight into the epsilon-inhibition mechanism.
Febs J., 282, 2015
1BM1
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BU of 1bm1 by Molmil
CRYSTAL STRUCTURE OF BACTERIORHODOPSIN IN THE LIGHT-ADAPTED STATE
分子名称: BACTERIORHODOPSIN, PHOSPHORIC ACID 2,3-BIS-(3,7,11,15-TETRAMETHYL-HEXADECYLOXY)-PROPYL ESTER 2-HYDROXO-3-PHOSPHONOOXY-PROPYL ESTER, RETINAL
著者Sato, H, Takeda, K, Tani, K, Hino, T, Okada, T, Nakasako, M, Kamiya, N, Kouyama, T.
登録日1998-07-28
公開日1999-04-27
最終更新日2023-08-02
実験手法X-RAY DIFFRACTION (3.5 Å)
主引用文献Specific lipid-protein interactions in a novel honeycomb lattice structure of bacteriorhodopsin.
Acta Crystallogr.,Sect.D, 55, 1999
8HJ9
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BU of 8hj9 by Molmil
cryoEM structure of glutamate dehydrogenase from Thermococcus profundus in complex with NADP
分子名称: Glutamate dehydrogenase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
著者Wakabayashi, T, Oide, M, Kato, T, Nakasako, M.
登録日2022-11-22
公開日2023-02-08
最終更新日2023-12-20
実験手法ELECTRON MICROSCOPY (3.12 Å)
主引用文献Coenzyme-binding pathway on glutamate dehydrogenase suggested from multiple-binding sites visualized by cryo-electron microscopy.
Febs J., 290, 2023
8HJ3
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BU of 8hj3 by Molmil
cryoEM structure of glutamate dehydrogenase from Thermococcus profundus in complex with NADP
分子名称: Glutamate dehydrogenase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
著者Wakabayashi, T, Oide, M, Kato, T, Nakasako, M.
登録日2022-11-22
公開日2023-02-08
最終更新日2023-12-20
実験手法ELECTRON MICROSCOPY (3.29 Å)
主引用文献Coenzyme-binding pathway on glutamate dehydrogenase suggested from multiple-binding sites visualized by cryo-electron microscopy.
Febs J., 290, 2023
8HHO
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BU of 8hho by Molmil
cryoEM structure of glutamate dehydrogenase from Thermococcus profundus in complex with NADP
分子名称: Glutamate dehydrogenase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
著者Wakabayashi, T, Oide, M, Kato, T, Nakasako, M.
登録日2022-11-16
公開日2023-02-08
最終更新日2023-12-20
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献Coenzyme-binding pathway on glutamate dehydrogenase suggested from multiple-binding sites visualized by cryo-electron microscopy.
Febs J., 290, 2023
8HIQ
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BU of 8hiq by Molmil
cryoEM structure of glutamate dehydrogenase from Thermococcus profundus in complex with NADP
分子名称: Glutamate dehydrogenase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
著者Wakabayashi, T, Oide, M, Kato, T, Nakasako, M.
登録日2022-11-21
公開日2023-02-08
最終更新日2023-12-20
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献Coenzyme-binding pathway on glutamate dehydrogenase suggested from multiple-binding sites visualized by cryo-electron microscopy.
Febs J., 290, 2023
8HIZ
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BU of 8hiz by Molmil
cryoEM structure of glutamate dehydrogenase from Thermococcus profundus in complex with NADP
分子名称: Glutamate dehydrogenase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
著者Wakabayashi, T, Oide, M, Kato, T, Nakasako, M.
登録日2022-11-22
公開日2023-02-08
最終更新日2023-12-20
実験手法ELECTRON MICROSCOPY (3.08 Å)
主引用文献Coenzyme-binding pathway on glutamate dehydrogenase suggested from multiple-binding sites visualized by cryo-electron microscopy.
Febs J., 290, 2023
1SU4
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BU of 1su4 by Molmil
Crystal structure of calcium ATPase with two bound calcium ions
分子名称: CALCIUM ION, SODIUM ION, Sarcoplasmic/endoplasmic reticulum calcium ATPase 1
著者Toyoshima, C, Nakasako, M, Nomura, H, Ogawa, H.
登録日2004-03-26
公開日2004-05-04
最終更新日2017-10-11
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Crystal structure of the calcium pump of sarcoplasmic reticulum at 2.6 A resolution
Nature, 405, 2000

 

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