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PDB: 17170 results

5CBT
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Human Cyclophilin D Complexed with Inhibitor
Descriptor: 1,2-ETHANEDIOL, FORMIC ACID, POTASSIUM ION, ...
Authors:Gibson, R.P, Shore, E, Kershaw, N, Awais, M, Javed, A, Latawiec, D, Pandalaneni, S, Wen, L, Berry, N, O'Neill, P, Sutton, R, Lian, L.Y.
Deposit date:2015-07-01
Release date:2016-07-20
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Human Cyclophilin D Complexed with Inhibitor
To Be Published
9BJ0
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Crystal structure of the periplasmic domain of IgaA from Escherichia coli
Descriptor: Intracellular growth attenuator protein igaA
Authors:Watanabe, N, Savchenko, A, Center for Structural Biology of Infectious Diseases (CSBID), Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2024-04-24
Release date:2024-07-17
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.64 Å)
Cite:Molecular insights into the initiation step of the Rcs signaling pathway.
Structure, 32, 2024
9C3D
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Crystal structure of metallo-beta-lactamase superfamily protein CcrA-like_MBL-B1 from Dyadobacter fermentans
Descriptor: Metallo-beta-lactamase type 2, ZINC ION
Authors:Kim, Y, Maltseva, N, Welk, L, Endres, M, Joachimiak, A, Center for Structural Biology of Infectious Diseases (CSBID)
Deposit date:2024-05-31
Release date:2024-07-17
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal structure of metallo-beta-lactamase superfamily protein CcrA-like_MBL-B1 from Dyadobacter fermentans
To Be Published
9F5H
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Crystal structure of MGAT5 bump-and-hole mutant in complex with UDP and M592
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, SULFATE ION, Secreted alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A, ...
Authors:Liu, Y, Bineva-Todd, G, Meek, R, Mazo, L, Piniello, B, Moroz, O.V, Begum, N, Roustan, C, Tomita, S, Kjaer, S, Rovira, C, Davies, G.J, Schumann, B.
Deposit date:2024-04-28
Release date:2024-10-02
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:A Bioorthogonal Precision Tool for Human N -Acetylglucosaminyltransferase V.
J.Am.Chem.Soc., 146, 2024
9CBZ
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Cryo-EM structure of mouse TRPML1 channel Y404W at 2.86 Angstrom resolution
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Mucolipin-1
Authors:Gan, N, Jiang, Y.
Deposit date:2024-06-20
Release date:2024-10-09
Method:ELECTRON MICROSCOPY (2.86 Å)
Cite:TRPML1 gating modulation by allosteric mutations and lipids.
Biorxiv, 2024
5TBH
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Crystal structure of mouse CARM1 in complex with inhibitor LH1236
Descriptor: (2~{R})-4-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-[[4-azanyl-1-(methoxymethyl)-2-oxidanylidene-pyrimidin-5-yl]methyl]amino]-2-azanyl-butanoic acid, 1,2-ETHANEDIOL, 1-METHOXY-2-(2-METHOXYETHOXY)ETHANE, ...
Authors:Cura, V, Marechal, N, Troffer-Charlier, N, Halby, L, Arimondo, P, Bonnefond, L, Cavarelli, J.
Deposit date:2016-09-12
Release date:2017-09-20
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.341 Å)
Cite:Hijacking DNA methyltransferase transition state analogues to produce chemical scaffolds for PRMT inhibitors.
Philos.Trans.R.Soc.Lond.B Biol.Sci., 373, 2018
9BZB
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BU of 9bzb by Molmil
Crystal structure of metallo-hydrolase-like_MBL-fold protein from Salmonella typhimurium LT2
Descriptor: 1,2-ETHANEDIOL, FORMIC ACID, SULFATE ION, ...
Authors:Kim, Y, Maltseva, N, Endres, M, Joachimiak, A, Center for Structural Biology of Infectious Diseases (CSBID)
Deposit date:2024-05-24
Release date:2024-06-05
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal structure of metallo-hydrolase-like_MBL-fold protein from Salmonella typhimurium LT2
To Be Published
9BCZ
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Chicken 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase zeta-1 (PLCZ1) in complex with calcium and phosphorylated threonine
Descriptor: 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase zeta-1, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, CALCIUM ION, ...
Authors:Edwards, M.M, Dong, A, Theo-Emegano, N, Seitova, A, Loppnau, P, Leung, R, Li, H, Ilyassov, O, Edwards, A.M, Arrowsmith, C.H, Structural Genomics Consortium, Structural Genomics Consortium (SGC)
Deposit date:2024-04-10
Release date:2024-05-15
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Chicken 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase zeta-1 (PLCZ1) in complex with calcium and phosphorylated threonine
To be published
9EQO
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BU of 9eqo by Molmil
N-terminal domain Infectious Bursal Disease Virus (IBDV) VP3
Descriptor: Capsid protein VP3
Authors:Ferrero, D.S, Verdaguer, N.
Deposit date:2024-03-22
Release date:2024-10-09
Method:X-RAY DIFFRACTION (1.34 Å)
Cite:Structure of the amino terminal domain of the Birnaviral multifunctional VP3 protein and its unexplored critical role
To Be Published
9EQP
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BU of 9eqp by Molmil
N-terminal domain of Infectious Bursal Disease Virus (IBDV) VP3
Descriptor: Capsid protein VP3
Authors:Ferrero, D.S, Verdaguer, N.
Deposit date:2024-03-22
Release date:2024-10-09
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Structure of the amino terminal domain of the Birnaviral multifunctional VP3 protein and its unexplored critical role.
To Be Published
9ATM
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BU of 9atm by Molmil
SARS-CoV-2 EG.5 RBD bound to the VIR-7229 and the S2H97 Fab fragments
Descriptor: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Rietz, T, Park, Y.J, Errico, J, Czudnochowski, N, Nix, J.C, Corti, D, Snell, G, Marco, A.D, Pinto, D, Cameroni, E, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler, D.
Deposit date:2024-02-27
Release date:2024-10-16
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:A potent pan-sarbecovirus neutralizing antibody resilient to epitope diversification.
Cell, 2024
9EME
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BU of 9eme by Molmil
AL amyloid fibril from the FOR103 light chain
Descriptor: lambda 3 immunoglobulin light chain fragment, residues 2-116
Authors:Pfeiffer, P.B, Karimi-Farsijani, S, Kupfer, N, Schmidt, M, Faendrich, M.
Deposit date:2024-03-08
Release date:2024-06-26
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (2.92 Å)
Cite:Light chain mutations contribute to defining the fibril morphology in systemic AL amyloidosis.
Nat Commun, 15, 2024
9EYR
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BU of 9eyr by Molmil
VDR complex with gemini analog UG-480
Descriptor: (1~{R},3~{S},5~{Z})-5-[(2~{E})-2-[(1~{R},3~{a}~{S},7~{a}~{R})-7~{a}-methyl-1-[(1~{R})-5-methyl-1-[(1~{S},2~{S})-2-(3-methyl-3-oxidanyl-butyl)cyclopropyl]-5-oxidanyl-hexyl]-2,3,3~{a},5,6,7-hexahydro-1~{H}-inden-4-ylidene]ethylidene]-4-methylidene-cyclohexane-1,3-diol, Nuclear receptor coactivator 1, Vitamin D3 receptor A
Authors:Rochel, N.
Deposit date:2024-04-09
Release date:2024-06-19
Last modified:2024-07-10
Method:X-RAY DIFFRACTION (2.56 Å)
Cite:Design, Synthesis, and Biological Evaluation of New Type of Gemini Analogues with a Cyclopropane Moiety in Their Side Chain.
J.Med.Chem., 67, 2024
9EQN
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BU of 9eqn by Molmil
N-terminal domain of Infectious Bursal Disease Virus (IBDV) VP3
Descriptor: ETHANOL, GLYCEROL, Structural polyprotein
Authors:Ferrero, D.S, Verdaguer, N.
Deposit date:2024-03-22
Release date:2024-10-09
Method:X-RAY DIFFRACTION (1.46 Å)
Cite:Structure of the amino terminal domain of the Birnaviral multifunctional VP3 protein and its unexplored critical role
To Be Published
9BZQ
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BU of 9bzq by Molmil
Structure of Class A Beta-lactamase from Bordetella bronchiseptica RB50 in a complex with Avibactam
Descriptor: (2S,5R)-1-formyl-5-[(sulfooxy)amino]piperidine-2-carboxamide, 1,2-ETHANEDIOL, FORMIC ACID, ...
Authors:Maltseva, N, Kim, Y, Endres, M, Joachimiak, A, Center for Structural Biology of Infectious Diseases (CSBID)
Deposit date:2024-05-24
Release date:2024-06-12
Method:X-RAY DIFFRACTION (1.47 Å)
Cite:Structure of Class A Beta-lactamase from Bordetella bronchiseptica RB50 in a complex with Avibactam
To Be Published
8ATL
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BU of 8atl by Molmil
Discovery of IRAK4 Inhibitor 23
Descriptor: Interleukin-1 receptor-associated kinase 4, ~{N}-[6-methoxy-2-(2-morpholin-4-yl-2-oxidanylidene-ethyl)indazol-5-yl]-6-[(1~{R})-2,2,2-tris(fluoranyl)-1-oxidanyl-ethyl]pyridine-2-carboxamide
Authors:Schafer, M, Bothe, U, Schmidt, N, Gunther, J, Nubbemeyer, R, Siebeneicher, H, Ring, S, Boemer, U, Peters, M, Denner, K, Himmel, H, Sutter, A, Terebesi, I, Lange, M, Wenger, A.M, Guimond, N, Thaler, T, Platzek, J, Eberspaecher, U, Steuber, H, Steinmeyer, A, Zollner, T.M.
Deposit date:2022-08-23
Release date:2023-09-06
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.464 Å)
Cite:Discovery of IRAK4 Inhibitors BAY1834845 (Zabedosertib) and BAY1830839 .
J.Med.Chem., 67, 2024
5TBI
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BU of 5tbi by Molmil
Crystal structure of mouse CARM1 in complex with inhibitor LH1427
Descriptor: 1,2-ETHANEDIOL, 3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-DIOL, 4-[2-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methylamino]ethylamino]-1-(methoxymethyl)pyrimidin-2-one, ...
Authors:Cura, V, Marechal, N, Troffer-Charlier, N, Halby, L, Arimondo, P, Bonnefond, L, Cavarelli, J.
Deposit date:2016-09-12
Release date:2017-09-20
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.294 Å)
Cite:Hijacking DNA methyltransferase transition state analogues to produce chemical scaffolds for PRMT inhibitors.
Philos.Trans.R.Soc.Lond.B Biol.Sci., 373, 2018
5CCR
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BU of 5ccr by Molmil
Human Cyclophilin D Complexed with Inhibitor
Descriptor: DI(HYDROXYETHYL)ETHER, FORMIC ACID, POTASSIUM ION, ...
Authors:Gibson, R.P, Shore, E, Kershaw, N, Awais, M, Javed, A, Latawiec, D, Pandalaneni, S, Wen, L, Berry, N, O'Neill, P, Sutton, R, Lian, L.Y.
Deposit date:2015-07-02
Release date:2016-07-20
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Human Cyclophilin D Complexed with Inhibitor
To Be Published
8ATN
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BU of 8atn by Molmil
Discovery of IRAK4 Inhibitor 38
Descriptor: Interleukin-1 receptor-associated kinase 4, ~{N}-[3-methyl-2-(3-methyl-3-oxidanyl-butyl)-6-(2-oxidanylpropan-2-yl)benzimidazol-5-yl]-6-(trifluoromethyl)pyridine-2-carboxamide
Authors:Schafer, M, Bothe, U, Schmidt, N, Gunther, J, Nubbemeyer, R, Siebeneicher, H, Ring, S, Boemer, U, Peters, M, Denner, K, Himmel, H, Sutter, A, Terebesi, I, Lange, M, Wenger, A.M, Guimond, N, Thaler, T, Platzek, J, Eberspaecher, U, Steuber, H, Steinmeyer, A, Zollner, T.M.
Deposit date:2022-08-23
Release date:2023-09-06
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.171 Å)
Cite:Discovery of IRAK4 Inhibitors BAY1834845 (Zabedosertib) and BAY1830839 .
J.Med.Chem., 67, 2024
8ATB
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BU of 8atb by Molmil
Discovery of IRAK4 Inhibitor 16
Descriptor: GLYCEROL, Interleukin-1 receptor-associated kinase 4, ~{N}-[6-ethoxy-2-[2-(4-methylpiperazin-1-yl)-2-oxidanylidene-ethyl]indazol-5-yl]-6-(trifluoromethyl)pyridine-2-carboxamide
Authors:Schafer, M, Bothe, U, Schmidt, N, Gunther, J, Nubbemeyer, R, Siebeneicher, H, Ring, S, Boemer, U, Peters, M, Denner, K, Himmel, H, Sutter, A, Terebesi, I, Lange, M, Wenger, A.M, Guimond, N, Thaler, T, Platzek, J, Eberspaecher, U, Steuber, H, Steinmeyer, A, Zollner, T.M.
Deposit date:2022-08-22
Release date:2023-11-29
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Discovery of IRAK4 Inhibitors BAY1834845 (Zabedosertib) and BAY1830839 .
J.Med.Chem., 67, 2024
7OIU
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BU of 7oiu by Molmil
Inner Membrane Complex (IMC) protomer structure (TrwM/VirB3, TrwK/VirB4, TrwG/VirB8tails) from the fully-assembled R388 type IV secretion system determined by cryo-EM.
Descriptor: TrwG protein, TrwK protein, TrwM protein
Authors:Mace, K, Vadakkepat, A.K, Lukoyanova, N, Waksman, G.
Deposit date:2021-05-12
Release date:2022-06-22
Last modified:2024-07-10
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Cryo-EM structure of a type IV secretion system.
Nature, 607, 2022
5CCN
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BU of 5ccn by Molmil
Human Cyclophilin D Complexed with Inhibitor
Descriptor: DI(HYDROXYETHYL)ETHER, FORMIC ACID, POTASSIUM ION, ...
Authors:Gibson, R.P, Shore, E, Kershaw, N, Awais, M, Javed, A, Latawiec, D, Pandalaneni, S, Wen, L, Berry, N, O'Neill, P, Sutton, R, Lian, L.Y.
Deposit date:2015-07-02
Release date:2016-07-20
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Human Cyclophilin D Complexed with Inhibitor
To Be Published
5CCS
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BU of 5ccs by Molmil
Human Cyclophilin D Complexed with Inhibitor
Descriptor: 1-(4-aminobenzyl)-3-{2-oxo-2-[(2R)-2-phenylpyrrolidin-1-yl]ethyl}urea, Peptidyl-prolyl cis-trans isomerase F, mitochondrial
Authors:Gibson, R.P, Shore, E, Kershaw, N, Awais, M, Javed, A, Latawiec, D, Pandalaneni, S, Wen, L, Berry, N, O'Neill, P, Sutton, R, Lian, L.Y.
Deposit date:2015-07-02
Release date:2016-07-20
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Human Cyclophilin D Complexed with Inhibitor
To Be Published
6V82
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BU of 6v82 by Molmil
Crystal structure of tryptophan synthase from Chlamydia trachomatis D/UW-3/CX
Descriptor: SULFATE ION, Tryptophan synthase alpha chain, Tryptophan synthase beta chain, ...
Authors:Michalska, K, Maltseva, N, Jedrzejczak, R, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2019-12-10
Release date:2020-12-16
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.424 Å)
Cite:Catalytically impaired TrpA subunit of tryptophan synthase from Chlamydia trachomatis is an allosteric regulator of TrpB.
Protein Sci., 30, 2021
5Y4H
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BU of 5y4h by Molmil
Human SIRT3 in complex with halistanol sulfate
Descriptor: NAD-dependent protein deacetylase sirtuin-3, mitochondrial, THr-Arg-Ser-GLY-ALY-VAL-MET-ARG-ARG-LEU-ARG-ARG, ...
Authors:Kudo, N, Ito, A, Yoshida, M.
Deposit date:2017-08-03
Release date:2018-05-16
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Halistanol sulfates I and J, new SIRT1-3 inhibitory steroid sulfates from a marine sponge of the genus Halichondria
J. Antibiot., 71, 2018

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PDB entries from 2024-10-30

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