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PDB: 90 results

1R69
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BU of 1r69 by Molmil
STRUCTURE OF THE AMINO-TERMINAL DOMAIN OF PHAGE 434 REPRESSOR AT 2.0 ANGSTROMS RESOLUTION
Descriptor: REPRESSOR PROTEIN CI
Authors:Mondragon, A, Subbiah, S, Alamo, S.C, Drottar, M, Harrison, S.C.
Deposit date:1988-12-08
Release date:1989-10-15
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of the amino-terminal domain of phage 434 repressor at 2.0 A resolution.
J.Mol.Biol., 205, 1989
3CRO
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BU of 3cro by Molmil
THE PHAGE 434 CRO/OR1 COMPLEX AT 2.5 ANGSTROMS RESOLUTION
Descriptor: DNA (5'-D(*AP*AP*GP*TP*AP*CP*AP*AP*AP*CP*TP*TP*TP*CP*TP*TP*G P*TP*AP*T)-3'), DNA (5'-D(*TP*AP*TP*AP*CP*AP*AP*GP*AP*AP*AP*GP*TP*TP*TP*GP*T P*AP*CP*T)-3'), PROTEIN (434 CRO)
Authors:Mondragon, A, Harrison, S.C.
Deposit date:1990-07-06
Release date:1991-10-15
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:The phage 434 Cro/OR1 complex at 2.5 A resolution.
J.Mol.Biol., 219, 1991
2CRO
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BU of 2cro by Molmil
STRUCTURE OF PHAGE 434 CRO PROTEIN AT 2.35 ANGSTROMS RESOLUTION
Descriptor: REGULATORY PROTEIN CRO
Authors:Mondragon, A, Wolberger, C, Harrison, S.C.
Deposit date:1988-12-08
Release date:1989-10-15
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Structure of phage 434 Cro protein at 2.35 A resolution.
J.Mol.Biol., 205, 1989
1D6M
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BU of 1d6m by Molmil
CRYSTAL STRUCTURE OF E. COLI DNA TOPOISOMERASE III
Descriptor: DNA TOPOISOMERASE III
Authors:Mondragon, A, DiGate, R.
Deposit date:1999-10-14
Release date:2000-10-14
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (3 Å)
Cite:The structure of Escherichia coli DNA topoisomerase III.
Structure Fold.Des., 7, 1999
7LJP
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BU of 7ljp by Molmil
Structure of Thermotoga maritima SmpB
Descriptor: 1,4-DIETHYLENE DIOXIDE, GLYCEROL, SULFATE ION, ...
Authors:Chan, C.W, Mondragon, A.
Deposit date:2021-01-29
Release date:2022-02-09
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of Thermotoga maritima SmpB reveals its C-terminal tail domain in a helical conformation mimicking that of a ribosome-bound state
To Be Published
3KBT
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BU of 3kbt by Molmil
Crystal structure of the ankyrin binding domain of human erythroid beta spectrin (repeats 13-15) in complex with the spectrin binding domain of human erythroid ankyrin (ZU5-ANK)
Descriptor: Ankyrin-1, Spectrin beta chain, erythrocyte
Authors:Ipsaro, J.J, Mondragon, A.
Deposit date:2009-10-20
Release date:2010-02-02
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Structural basis for spectrin recognition by ankyrin.
Blood, 115, 2010
3KBU
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BU of 3kbu by Molmil
Crystal structure of the ankyrin binding domain of human erythroid beta spectrin (repeats 13-15) in complex with the spectrin binding domain of human erythroid ankyrin (ZU5-ANK), EMTS derivative
Descriptor: Ankyrin-1, MERCURY (II) ION, Spectrin beta chain, ...
Authors:Ipsaro, J.J, Mondragon, A.
Deposit date:2009-10-20
Release date:2010-02-02
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Structural basis for spectrin recognition by ankyrin.
Blood, 115, 2010
3K7R
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BU of 3k7r by Molmil
Crystal structure of [TM][CuAtx1]3
Descriptor: COPPER (II) ION, D-MALATE, Metal homeostasis factor ATX1, ...
Authors:Xue, Y, Alvarez, H.M, Robinson, C.D, Mondragon, A, O'Halloran, T.V.
Deposit date:2009-10-13
Release date:2009-11-24
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.28 Å)
Cite:Tetrathiomolybdate inhibits copper trafficking proteins through metal cluster formation.
Science, 327, 2010
4ZQA
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BU of 4zqa by Molmil
Crystal Structure of the Sds3 Dimerization Domain
Descriptor: Sin3 histone deacetylase corepressor complex component SDS3
Authors:Chan, C.W, Mondragon, A, Clark, M, Radhakrishnan, I.
Deposit date:2015-05-08
Release date:2015-07-15
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structural insights into the assembly of the histone deacetylase-associated Sin3L/Rpd3L corepressor complex.
Proc.Natl.Acad.Sci.USA, 112, 2015
5HM5
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BU of 5hm5 by Molmil
Crystal structure of Topo-97, an N-terminal 97kDa fragment of topoisomerase V
Descriptor: Topoisomerase V
Authors:Rajan, R, Osterman, A, Mondragon, A.
Deposit date:2016-01-15
Release date:2016-03-09
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Methanopyrus kandleri topoisomerase V contains three distinct AP lyase active sites in addition to the topoisomerase active site.
Nucleic Acids Res., 44, 2016
4WLW
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BU of 4wlw by Molmil
CRYSTAL STRUCTURE OF THE AG(I) (ACTIVATOR) FORM OF E. COLI CUER, A COPPER EFFLUX REGULATOR, BOUND TO COPA PROMOTER DNA
Descriptor: DNA NON-TEMPLATE STRAND (5-D(*DGP*DAP*DCP*DCP *DTP*DTP*DCP*DCP*DCP*DCP*DTP*DTP*DGP*DCP*DTP*DGP*DGP*DAP *DAP*DGP*DGP*DTP*DC)-3, DNA TEMPLATE STRAND (5-D(*DGP*DAP*DCP*DCP*DTP *DTP*DCP*DCP*DAP*DGP*DCP*DAP*DAP*DGP*DGP*DGP*DGP*DAP*DAP *DGP*DGP*DTP*DC)-3, HTH-type transcriptional regulator CueR, ...
Authors:Philips, S.J, Canalizo-Hernandez, M, Mondragon, A, O'Halloran, T.V.
Deposit date:2014-10-08
Release date:2015-09-02
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:TRANSCRIPTION. Allosteric transcriptional regulation via changes in the overall topology of the core promoter.
Science, 349, 2015
4WLS
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BU of 4wls by Molmil
Crystal structure of the metal-free (repressor) form of E. Coli CUER, a copper efflux regulator, bound to COPA promoter DNA
Descriptor: COPA PROMOTER DNA NON-TEMPLATE STRAND, COPA PROMOTER DNA NON-TEMPLATE STRAND (ALTERNATE CONFORMATION), COPA PROMOTER DNA TEMPLATE STRAND, ...
Authors:Philips, S.J, Canalizo-Hernandez, M, Mondragon, A, O'Halloran, T.V.
Deposit date:2014-10-08
Release date:2015-09-02
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.105 Å)
Cite:Allosteric transcriptional regulation via changes in the overall topology of the core promoter.
Science, 349, 2015
8DF8
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BU of 8df8 by Molmil
Structure of M. kandleri topoisomerase V in complex with DNA. 40 base pair symmetric DNA complex
Descriptor: DNA (42-MER), PHOSPHATE ION, PHOSPHITE ION, ...
Authors:Osterman, A, Mondragon, A.
Deposit date:2022-06-21
Release date:2022-08-31
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.92 Å)
Cite:Structures of topoisomerase V in complex with DNA reveal unusual DNA binding mode and novel relaxation mechanism.
Elife, 11, 2022
8DFB
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BU of 8dfb by Molmil
Structure of M. kandleri topoisomerase V in complex with DNA. 39 base pair symmetric DNA complex
Descriptor: DNA (40-MER), POTASSIUM ION, Topoisomerase V
Authors:Osterman, A, Mondragon, A.
Deposit date:2022-06-21
Release date:2022-08-31
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (3.17 Å)
Cite:Structures of topoisomerase V in complex with DNA reveal unusual DNA binding mode and novel relaxation mechanism.
Elife, 11, 2022
8DF7
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BU of 8df7 by Molmil
Structure of M. kandleri topoisomerase V in complex with DNA. 38 base pair symmetric DNA complex
Descriptor: DNA (39-MER), POTASSIUM ION, Topoisomerase V
Authors:Osterman, A, Mondragon, A.
Deposit date:2022-06-21
Release date:2022-08-31
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (3.52 Å)
Cite:Structures of topoisomerase V in complex with DNA reveal unusual DNA binding mode and novel relaxation mechanism.
Elife, 11, 2022
8DF9
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BU of 8df9 by Molmil
Structure of M. kandleri topoisomerase V in complex with DNA. 38 base pair asymmetric DNA complex
Descriptor: DNA (33-MER), DNA (5'-D(P*GP*CP*CP*TP*GP*CP*AP*CP*GP*AP*AP*GP*TP*AP*AP*GP*C)-3'), DNA (5'-D(P*GP*CP*CP*TP*GP*CP*AP*CP*GP*AP*AP*GP*TP*AP*AP*GP*CP*A)-3'), ...
Authors:Osterman, A, Mondragon, A.
Deposit date:2022-06-21
Release date:2022-08-31
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (3.24 Å)
Cite:Structures of topoisomerase V in complex with DNA reveal unusual DNA binding mode and novel relaxation mechanism.
Elife, 11, 2022
4GFJ
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BU of 4gfj by Molmil
Crystal structure of Topo-78, an N-terminal 78kDa fragment of topoisomerase V
Descriptor: GLYCEROL, Topoisomerase V, ZINC ION
Authors:Rajan, R, Prasad, R, Taneja, B, Wilson, S.H, Mondragon, A.
Deposit date:2012-08-03
Release date:2012-12-05
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.91 Å)
Cite:Identification of one of the apurinic/apyrimidinic lyase active sites of topoisomerase V by structural and functional studies.
Nucleic Acids Res., 41, 2013
3UD2
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BU of 3ud2 by Molmil
Crystal structure of Selenomethionine ZU5A-ZU5B protein domains of human erythrocyte ankyrin
Descriptor: Ankyrin-1, CHLORIDE ION, ETHANOL, ...
Authors:Yasunaga, M, Ipsaro, J.J, Mondragon, A.
Deposit date:2011-10-27
Release date:2012-02-22
Last modified:2019-12-25
Method:X-RAY DIFFRACTION (2.21 Å)
Cite:Structurally Similar but Functionally Diverse ZU5 Domains in Human Erythrocyte Ankyrin.
J.Mol.Biol., 417, 2012
1YN9
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BU of 1yn9 by Molmil
Crystal structure of baculovirus RNA 5'-phosphatase complexed with phosphate
Descriptor: PHOSPHATE ION, polynucleotide 5'-phosphatase
Authors:Changela, A, Martins, A, Shuman, S, Mondragon, A.
Deposit date:2005-01-24
Release date:2005-02-22
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal structure of baculovirus RNA triphosphatase complexed with phosphate
J.Biol.Chem., 280, 2005
7UZW
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BU of 7uzw by Molmil
Staphylococcus epidermidis RP62a CRISPR effector subcomplex
Descriptor: CRISPR system Cms endoribonuclease Csm3, CRISPR system Cms protein Csm4, CRISPR system single-strand-specific deoxyribonuclease Cas10/Csm1 (subtype III-A), ...
Authors:Smith, E.M, Ferrell, S.H, Tokars, V.L, Mondragon, A.
Deposit date:2022-05-09
Release date:2022-07-06
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (3.55 Å)
Cite:Structures of an active type III-A CRISPR effector complex.
Structure, 30, 2022
4MTE
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BU of 4mte by Molmil
Zinc Uptake Regulator Complexed with Zinc and DNA
Descriptor: ZINC ION, Zinc uptake regulation protein, znuABC operator DNA
Authors:Gilston, B.A, Mondragon, A, O'Halloran, T.V.
Deposit date:2013-09-19
Release date:2014-11-05
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural and Mechanistic Basis of Zinc Regulation Across the E. coli Zur Regulon.
Plos Biol., 12, 2014
4MTD
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BU of 4mtd by Molmil
Zinc Uptake Regulator Complexed With Zinc AND DNA
Descriptor: ZINC ION, Zinc uptake regulation protein, znuABC operator DNA
Authors:Gilston, B.A, Mondragon, A, O'Halloran, T.V.
Deposit date:2013-09-19
Release date:2014-11-05
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural and Mechanistic Basis of Zinc Regulation Across the E. coli Zur Regulon.
Plos Biol., 12, 2014
3UD1
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BU of 3ud1 by Molmil
Crystal structure of ZU5A-ZU5B domains of human erythrocyte ankyrin
Descriptor: Ankyrin-1, ETHANOL
Authors:Yasunaga, M, Ipsaro, J.J, Mondragon, A.
Deposit date:2011-10-27
Release date:2012-02-22
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structurally Similar but Functionally Diverse ZU5 Domains in Human Erythrocyte Ankyrin.
J.Mol.Biol., 417, 2012
7V01
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BU of 7v01 by Molmil
Staphylococcus epidermidis RP62a CRISPR short effector complex with self RNA target and ATP
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, CRISPR system Cms endoribonuclease Csm3, CRISPR system Cms protein Csm2, ...
Authors:Smith, E.M, Ferrell, S.H, Tokars, V.L, Mondragon, A.
Deposit date:2022-05-09
Release date:2022-07-06
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (3.67 Å)
Cite:Structures of an active type III-A CRISPR effector complex.
Structure, 30, 2022
7UZY
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BU of 7uzy by Molmil
Staphylococcus epidermidis RP62A CRISPR effector complex with non-self target RNA 2
Descriptor: CRISPR system Cms endoribonuclease Csm3, CRISPR system Cms protein Csm2, CRISPR system Cms protein Csm4, ...
Authors:Smith, E.M, Ferrell, S.H, Tokars, V.L, Mondragon, A.
Deposit date:2022-05-09
Release date:2022-07-06
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (4.05 Å)
Cite:Structures of an active type III-A CRISPR effector complex.
Structure, 30, 2022

 

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