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PDB: 274 results

2XE8
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The complete reaction cycle of human phosphoglycerate kinase: The open ternary complex with 3PG and AMP-PNP
Descriptor: 3-PHOSPHOGLYCERIC ACID, PHOSPHOGLYCERATE KINASE 1, PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER
Authors:Cliff, M.J, Baxter, N.J, Blackburn, G.M, Merli, A, Vas, M, Waltho, J.P, Bowler, M.W.
Deposit date:2010-05-11
Release date:2011-01-19
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.79 Å)
Cite:A Spring Loaded Release Mechanism Regulates Domain Movement and Catalysis in Phosphoglycerate Kinase.
J.Biol.Chem., 286, 2011
2XE7
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The complete reaction cycle of human phosphoglycerate kinase: The open ternary complex with 3PG and ADP
Descriptor: 3-PHOSPHOGLYCERIC ACID, ADENOSINE-5'-DIPHOSPHATE, PHOSPHOGLYCERATE KINASE 1
Authors:Cliff, M.J, Baxter, N.J, Blackburn, G.M, Merli, A, Vas, M, Waltho, J.P, Bowler, M.W.
Deposit date:2010-05-11
Release date:2011-01-19
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:A Spring Loaded Release Mechanism Regulates Domain Movement and Catalysis in Phosphoglycerate Kinase.
J.Biol.Chem., 286, 2011
1JVO
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Azurin dimer, crosslinked via disulfide bridge
Descriptor: Azurin, COPPER (II) ION
Authors:van Amsterdam, I.M.C, Ubbink, M, Einsle, O, Messerschmidt, A, Merli, A, Cavazzini, D, Rossi, G.L, Canters, G.W.
Deposit date:2001-08-30
Release date:2002-01-04
Last modified:2021-10-27
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Dramatic modulation of electron transfer in protein complexes by crosslinking
Nat.Struct.Biol., 9, 2002
2IAA
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BU of 2iaa by Molmil
Crystal Structure of an Electron Transfer Complex Between Aromatic Amine Dephydrogenase and Azurin from Alcaligenes Faecalis (Form 2)
Descriptor: Aromatic Amine Dehydrogenase, Azurin, COPPER (II) ION
Authors:Sukumar, N, Chen, Z, Leys, D, Scrutton, N.S, Ferrati, D, Merli, A, Rossi, G.L, Bellamy, H.D, Chistoserdov, A, Davidson, V.L, Mathews, F.S.
Deposit date:2006-09-07
Release date:2006-11-21
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal Structure of an Electron Transfer Complex between Aromatic Amine Dehydrogenase and Azurin from Alcaligenes faecalis.
Biochemistry, 45, 2006
2H47
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Crystal Structure of an Electron Transfer Complex Between Aromatic Amine Dephydrogenase and Azurin from Alcaligenes Faecalis (Form 1)
Descriptor: Aromatic Amine Dehydrogenase, Azurin, COPPER (II) ION
Authors:Sukumar, N, Chen, Z, Leys, D, Scrutton, N.S, Ferrati, D, Merli, A, Rossi, G.L, Bellamy, H.D, Chistoserdov, A, Davidson, V.L, Mathews, F.S.
Deposit date:2006-05-23
Release date:2006-11-21
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal Structure of an Electron Transfer Complex between Aromatic Amine Dehydrogenase and Azurin from Alcaligenes faecalis.
Biochemistry, 45, 2006
2H3X
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Crystal Structure of an Electron Transfer Complex Between Aromatic Amine Dehydrogenase and Azurin from Alcaligenes Faecalis (Form 3)
Descriptor: Aromatic Amine Dehydrogenase, Azurin, COPPER (II) ION
Authors:Sukumar, N, Chen, Z, Leys, D, Scrutton, N.S, Ferrati, D, Merli, A, Rossi, G.L, Bellamy, H.D, Chistoserdov, A, Davidson, V.L, Mathews, F.S.
Deposit date:2006-05-23
Release date:2006-11-21
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal Structure of an Electron Transfer Complex between Aromatic Amine Dehydrogenase and Azurin from Alcaligenes faecalis.
Biochemistry, 45, 2006
1EOW
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BU of 1eow by Molmil
CRYSTAL STRUCTURE OF RIBONUCLEASE A COMPLEXED WITH URIDYLYL(2',5')GUANOSINE (NON-PRODUCTIVE BINDING)
Descriptor: RIBONUCLEASE PANCREATIC, SULFATE ION, URIDYLYL-2'-5'-PHOSPHO-GUANOSINE
Authors:Vitagliano, L, Merlino, A, Zagari, A, Mazzarella, L.
Deposit date:2000-03-24
Release date:2000-11-17
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Productive and nonproductive binding to ribonuclease A: X-ray structure of two complexes with uridylyl(2',5')guanosine.
Protein Sci., 9, 2000
3D1K
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BU of 3d1k by Molmil
R/T intermediate quaternary structure of an antarctic fish hemoglobin in an alpha(CO)-beta(pentacoordinate) state
Descriptor: ACETYL GROUP, CARBON MONOXIDE, Hemoglobin subunit alpha-1, ...
Authors:Vitagliano, L, Vergara, A, Bonomi, G, Merlino, A, Mazzarella, L.
Deposit date:2008-05-06
Release date:2008-08-05
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Spectroscopic and crystallographic characterization of a tetrameric hemoglobin oxidation reveals structural features of the functional intermediate relaxed/tense state.
J.Am.Chem.Soc., 130, 2008
6ENV
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BU of 6env by Molmil
X-ray structure of Au2phen-encapsulated horse spleen apoferritin
Descriptor: CADMIUM ION, CHLORIDE ION, Ferritin light chain, ...
Authors:Ferraro, G, Merlino, A.
Deposit date:2017-10-06
Release date:2017-12-13
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:Ferritin nanocages loaded with gold ions induce oxidative stress and apoptosis in MCF-7 human breast cancer cells.
Dalton Trans, 46, 2017
8CE2
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X-ray structure of the adduct formed upon reaction of a B-DNA double helical dodecamer with dirhodium tetraacetate
Descriptor: CHLORIDE ION, DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'), MAGNESIUM ION, ...
Authors:Tito, G, Troisi, R, Ferraro, G, Sica, F, Merlino, A.
Deposit date:2023-02-01
Release date:2023-05-31
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (1.24 Å)
Cite:Dirhodium tetraacetate binding to a B-DNA double helical dodecamer probed by X-ray crystallography and mass spectrometry.
Dalton Trans, 52, 2023
8C63
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Crystal structure of arsenoplatin-1/B-DNA adduct obtained upon 4 h of soaking
Descriptor: DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'), MAGNESIUM ION, PLATINUM (II) ION, ...
Authors:Troisi, R, Tito, G, Ferraro, G, Sica, F, Merlino, A.
Deposit date:2023-01-11
Release date:2024-01-31
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.52 Å)
Cite:On the mechanism of action of arsenoplatins: arsenoplatin-1 binding to a B-DNA dodecamer.
Dalton Trans, 53, 2024
4PPO
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BU of 4ppo by Molmil
First Crystal Structure for an Oxaliplatin-Protein Complex
Descriptor: 1,2-ETHANEDIOL, CYCLOHEXANE-1(R),2(R)-DIAMINE-PLATINUM(II), Lysozyme C, ...
Authors:Messori, L, Merlino, A.
Deposit date:2014-02-27
Release date:2015-01-14
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:The X-ray structure of the complex formed in the reaction between oxaliplatin and lysozyme.
Chem.Commun.(Camb.), 50, 2014
8C3B
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BU of 8c3b by Molmil
X-ray structure of RNase A upon reaction with a Ruthenium(II)-arene Complexed with Glycosylated Carbene Ligands (5)
Descriptor: (1,3-dimethyl-2~{H}-imidazol-2-yl)-oxidanyl-oxidanylidene-ruthenium, (1,3-dimethylimidazol-1-ium-2-yl)-tetrakis(oxidanyl)ruthenium, (1,3-dimethylimidazol-1-ium-2-yl)-tris(oxidanyl)ruthenium, ...
Authors:Ferraro, G, Merlino, A.
Deposit date:2022-12-23
Release date:2024-01-10
Method:X-RAY DIFFRACTION (1.24 Å)
Cite:Ruthenium(II)-arene Complexes with Glycosylated Carbene Ligands: Synthesis, Characterization, Antiproliferative Activity, In Solution and Crystallographic Evidences of Macromolecule Binding
To Be Published
7Z6G
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BU of 7z6g by Molmil
X-ray structure of the adduct obtained upon reaction of [Rh2(OCOCH3)(OCOCF3)3] with RNase A (2)
Descriptor: (mi2-acetato-O, O')-hexaaquo-dirhodium (II), Rhodium, ...
Authors:Loreto, D, Merlino, A.
Deposit date:2022-03-11
Release date:2023-03-22
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.71 Å)
Cite:Reactivity of a fluorine-containing dirhodium tetracarboxylate compound with proteins
Dalton Trans, 51, 2022
7Z6D
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BU of 7z6d by Molmil
X-ray structure of the adduct obtained upon reaction of [Rh2(OCOCH3)(OCOCF3)3] with RNase A (1)
Descriptor: (mi2-acetato-O, O')-hexaaquo-dirhodium (II), ACETATE ION, ...
Authors:Loreto, D, Merlino, A.
Deposit date:2022-03-11
Release date:2023-03-22
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Reactivity of a fluorine-containing dirhodium tetracarboxylate compound with proteins
Dalton Trans, 51, 2022
6RP5
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BU of 6rp5 by Molmil
Crystal structure of monocarboxylated hemoglobin from the sub-Antarctic fish Eleginops maclovinus
Descriptor: CARBON MONOXIDE, DITHIONITE, Hemoglobin subunit alpha 1, ...
Authors:Balasco, N, Vitagliano, L, Merlino, A, Verde, C, Mazzarella, L, Vergara, A.
Deposit date:2019-05-13
Release date:2019-12-25
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.49 Å)
Cite:The unique structural features of carbonmonoxy hemoglobin from the sub-Antarctic fish Eleginops maclovinus.
Sci Rep, 9, 2019
8C39
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BU of 8c39 by Molmil
X-ray structure of HEWL upon reaction with a Ruthenium(II)-arene Complexed with Glycosylated Carbene Ligands (5)
Descriptor: CHLORIDE ION, Lysozyme, NITRATE ION, ...
Authors:Ferraro, G, Merlino, A.
Deposit date:2022-12-23
Release date:2024-01-10
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Ruthenium(II)-arene Complexes with Glycosylated Carbene Ligands: Synthesis, Characterization, Antiproliferative Activity, In Solution and Crystallographic Evidences of Macromolecule Binding
To Be Published
7Z6J
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BU of 7z6j by Molmil
X-ray structure of the adduct obtained upon reaction of [Rh2(OCOCH3)(OCOCF3)3] with HEWL
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Lysozyme, Rhodium, ...
Authors:Loreto, D, Merlino, A.
Deposit date:2022-03-11
Release date:2023-03-22
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.53 Å)
Cite:Reactivity of a fluorine-containing dirhodium tetracarboxylate compound with proteins
Dalton Trans, 51, 2022
8C64
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BU of 8c64 by Molmil
Crystal structure of arsenoplatin-1/B-DNA adduct obtained upon 48 h of soaking
Descriptor: DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'), PLATINUM (II) ION, arsenoplatin-1
Authors:Troisi, R, Tito, G, Ferraro, G, Sica, F, Merlino, A.
Deposit date:2023-01-11
Release date:2024-01-31
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.51 Å)
Cite:On the mechanism of action of arsenoplatins: arsenoplatin-1 binding to a B-DNA dodecamer.
Dalton Trans, 53, 2024
8C62
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BU of 8c62 by Molmil
Crystal structure of cisplatin/B-DNA adduct
Descriptor: DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'), PLATINUM (II) ION
Authors:Troisi, R, Tito, G, Ferraro, G, Sica, F, Merlino, A.
Deposit date:2023-01-11
Release date:2024-01-31
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.31 Å)
Cite:On the mechanism of action of arsenoplatins: arsenoplatin-1 binding to a B-DNA dodecamer.
Dalton Trans, 53, 2024
6Y3D
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BU of 6y3d by Molmil
X-ray structure of thermophilic C-phycocyanin from Galdiera phlegrea
Descriptor: ACETATE ION, C-phycocyanin alpha chain, C-phycocyanin beta chain, ...
Authors:Ferraro, G, Lucignano, R, Marseglia, A, Merlino, A.
Deposit date:2020-02-18
Release date:2020-12-30
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:X-ray structure of C-phycocyanin from Galdieria phlegrea: Determinants of thermostability and comparison with a C-phycocyanin in the entire phycobilisome.
Biochim Biophys Acta Bioenerg, 1861, 2020
7P8R
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BU of 7p8r by Molmil
X-ray structure of the adduct of a vanadium picolinate complex with RNase A at pH 5.1
Descriptor: Ribonuclease pancreatic, SULFATE ION, hydroxy(oxo)bis(pyridine-2-carboxylato-kappa~2~N,O)vanadium(3+)
Authors:Ferraro, G, Merlino, A.
Deposit date:2021-07-23
Release date:2021-12-22
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.27 Å)
Cite:Spectroscopic/Computational Characterization and the X-ray Structure of the Adduct of the V IV O-Picolinato Complex with RNase A.
Inorg.Chem., 60, 2021
8RI5
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BU of 8ri5 by Molmil
Crystal structure of transplatin/B-DNA adduct obtained upon 48 h of soaking
Descriptor: AMMONIA, DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'), MAGNESIUM ION, ...
Authors:Tito, G, Troisi, R, Ferraro, G, Sica, F, Merlino, A.
Deposit date:2023-12-18
Release date:2024-02-07
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.415 Å)
Cite:On the mechanism of action of arsenoplatins: arsenoplatin-1 binding to a B-DNA dodecamer.
Dalton Trans, 53, 2024
6ZS8
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BU of 6zs8 by Molmil
X-ray structure of the adduct formed upon treating lysozyme with an aged solution of arsenoplatin-1
Descriptor: 1,2-ETHANEDIOL, DIMETHYL SULFOXIDE, Lysozyme, ...
Authors:Ferraro, G, Merlino, A.
Deposit date:2020-07-15
Release date:2020-12-23
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.153 Å)
Cite:The first step of arsenoplatin-1 aggregation in solution unveiled by solving the crystal structure of its protein adduct.
Dalton Trans, 50, 2021
8RI3
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Crystal structure of transplatin/B-DNA adduct obtained upon 7 days of soaking
Descriptor: AMMONIA, CHLORIDE ION, DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'), ...
Authors:Tito, G, Troisi, R, Ferraro, G, Sica, F, Merlino, A.
Deposit date:2023-12-18
Release date:2024-02-28
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:On the mechanism of action of arsenoplatins: arsenoplatin-1 binding to a B-DNA dodecamer.
Dalton Trans, 53, 2024

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PDB entries from 2024-07-17

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