5YE4
| Crystal structure of the complex of di-acetylated histone H4 and 1A9D7 Fab fragment | 分子名称: | 1A9D7 L chain, 1A9D7 VH CH1 chain, ZINC ION, ... | 著者 | Matsuda, T, Ito, T, Wakamori, M, Umehara, T. | 登録日 | 2017-09-15 | 公開日 | 2018-08-22 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (1.799 Å) | 主引用文献 | JQ1 affects BRD2-dependent and independent transcription regulation without disrupting H4-hyperacetylated chromatin states. Epigenetics, 13, 2018
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5YE3
| Crystal structure of the complex of di-acetylated histone H4 and 2A7D9 Fab fragment | 分子名称: | 2A7D9 L chain, 2A7D9 VH CH1 chain, di-acetylated histone H4 | 著者 | Matsuda, T, Ito, T, Wakamori, M, Umehara, T. | 登録日 | 2017-09-15 | 公開日 | 2018-08-22 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (1.7 Å) | 主引用文献 | JQ1 affects BRD2-dependent and independent transcription regulation without disrupting H4-hyperacetylated chromatin states. Epigenetics, 13, 2018
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5XWD
| Crystal structure of the complex of 059-152-Fv and EGFR-ECD | 分子名称: | 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Epidermal growth factor receptor, ... | 著者 | Matsuda, T, Ito, T, Shirouzu, M. | 登録日 | 2017-06-29 | 公開日 | 2018-02-28 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (2.894 Å) | 主引用文献 | Cell-free synthesis of functional antibody fragments to provide a structural basis for antibody-antigen interaction PLoS ONE, 13, 2018
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2CZR
| Crystal structure of TBP-interacting protein (Tk-TIP26) and implications for its inhibition mechanism of the interaction between TBP and TATA-DNA | 分子名称: | GLYCEROL, TBP-interacting protein, ZINC ION | 著者 | Yamamoto, T, Matsuda, T, Inoue, T, Matsumura, H, Morikawa, M, Kanaya, S, Kai, Y. | 登録日 | 2005-07-15 | 公開日 | 2006-02-14 | 最終更新日 | 2024-03-13 | 実験手法 | X-RAY DIFFRACTION (2.3 Å) | 主引用文献 | Crystal structure of TBP-interacting protein (Tk-TIP26) and implications for its inhibition mechanism of the interaction between TBP and TATA-DNA Protein Sci., 15, 2006
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6J1C
| Photoswitchable fluorescent protein Gamillus, N150C/T204V double mutant, off-state | 分子名称: | CHLORIDE ION, GLYCEROL, Green fluorescent protein | 著者 | Nakashima, R, Shinoda, H, Matsuda, T, Nagai, T. | 登録日 | 2018-12-28 | 公開日 | 2019-11-06 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (2.09 Å) | 主引用文献 | Acid-Tolerant Reversibly Switchable Green Fluorescent Protein for Super-resolution Imaging under Acidic Conditions. Cell Chem Biol, 26, 2019
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6J1B
| Photoswitchable fluorescent protein Gamillus, N150C/T204V double mutant, on-state | 分子名称: | CHLORIDE ION, GLYCEROL, Green fluorescent protein, ... | 著者 | Nakashima, R, Shinoda, H, Matsuda, T, Nagai, T. | 登録日 | 2018-12-28 | 公開日 | 2019-11-06 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (1.99 Å) | 主引用文献 | Acid-Tolerant Reversibly Switchable Green Fluorescent Protein for Super-resolution Imaging under Acidic Conditions. Cell Chem Biol, 26, 2019
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6J1A
| Photoswitchable fluorescent protein Gamillus, off-state | 分子名称: | CHLORIDE ION, GLYCEROL, Green fluorescent protein, ... | 著者 | Nakashima, R, Sakurai, K, shinoda, H, Matsuda, T, Nagai, T. | 登録日 | 2018-12-28 | 公開日 | 2019-11-06 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (1.96 Å) | 主引用文献 | Acid-Tolerant Reversibly Switchable Green Fluorescent Protein for Super-resolution Imaging under Acidic Conditions. Cell Chem Biol, 26, 2019
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6ISV
| Structure of acetophenone reductase from Geotrichum candidum NBRC 4597 in complex with NAD | 分子名称: | Acetophenone reductase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ZINC ION | 著者 | Koesoema, A.A, Sugiyama, Y, Senda, M, Senda, T, Matsuda, T. | 登録日 | 2018-11-19 | 公開日 | 2019-09-11 | 最終更新日 | 2024-03-27 | 実験手法 | X-RAY DIFFRACTION (2.5 Å) | 主引用文献 | Structural basis for a highly (S)-enantioselective reductase towards aliphatic ketones with only one carbon difference between side chain. Appl.Microbiol.Biotechnol., 103, 2019
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3UFZ
| Crystal structure of a Trp-less green fluorescent protein translated by the universal genetic code | 分子名称: | Green fluorescent protein | 著者 | Kawahara-Kobayashi, A, Araiso, Y, Matsuda, T, Yokoyama, S, Kigawa, T, Nureki, O, Kiga, D. | 登録日 | 2011-11-02 | 公開日 | 2012-10-17 | 最終更新日 | 2023-12-06 | 実験手法 | X-RAY DIFFRACTION (1.85 Å) | 主引用文献 | Simplification of the genetic code: restricted diversity of genetically encoded amino acids. Nucleic Acids Res., 40, 2012
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3UG0
| Crystal structure of a Trp-less green fluorescent protein translated by the simplified genetic code | 分子名称: | Green fluorescent protein | 著者 | Kawahara-Kobayashi, A, Araiso, Y, Matsuda, T, Yokoyama, S, Kigawa, T, Nureki, O, Kiga, D. | 登録日 | 2011-11-02 | 公開日 | 2012-10-17 | 最終更新日 | 2023-12-06 | 実験手法 | X-RAY DIFFRACTION (2.093 Å) | 主引用文献 | Simplification of the genetic code: restricted diversity of genetically encoded amino acids. Nucleic Acids Res., 40, 2012
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1IOZ
| Crystal Structure of the C-HA-RAS Protein Prepared by the Cell-Free Synthesis | 分子名称: | GUANOSINE-5'-DIPHOSPHATE, TRANSFORMING PROTEIN P21/H-RAS-1 | 著者 | Kigawa, T, Yamaguchi-Nunokawa, E, Kodama, K, Matsuda, T, Yabuki, T, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 2001-04-18 | 公開日 | 2001-10-03 | 最終更新日 | 2023-12-27 | 実験手法 | X-RAY DIFFRACTION (2 Å) | 主引用文献 | Selenomethionine incorporation into a protein by cell-free synthesis J.STRUCT.FUNCT.GENOM., 2, 2001
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1V9J
| Solution structure of a BolA-like protein from Mus musculus | 分子名称: | BolA-like protein RIKEN cDNA 1110025L05 | 著者 | Kasai, T, Inoue, M, Koshiba, S, Yabuki, T, Aoki, M, Nunokawa, E, Seki, E, Matsuda, T, Matsuda, N, Tomo, Y, Shirouzu, M, Terada, T, Obayashi, N, Hamana, H, Shinya, N, Tatsuguchi, A, Yasuda, S, Yoshida, M, Hirota, H, Matsuo, Y, Tani, K, Suzuki, H, Arakawa, T, Carninci, P, Kawai, J, Hayashizaki, Y, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 2004-01-26 | 公開日 | 2004-02-10 | 最終更新日 | 2023-12-27 | 実験手法 | SOLUTION NMR | 主引用文献 | Solution structure of a BolA-like protein from Mus musculus Protein Sci., 13, 2004
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2UXS
| 2.7A crystal structure of inorganic pyrophosphatase (Rv3628) from Mycobacterium tuberculosis at pH 7.5 | 分子名称: | INORGANIC PYROPHOSPHATASE, PHOSPHATE ION | 著者 | Cole, R.E, Cianci, M, Hall, J.F, Matsuda, T, Kigawa, T, Yokoyama, S, Hasnain, S.S, Tabernero, L. | 登録日 | 2007-03-29 | 公開日 | 2008-05-27 | 最終更新日 | 2023-12-13 | 実験手法 | X-RAY DIFFRACTION (2.7 Å) | 主引用文献 | Crystal Structure of Rv3628: An Inorganic Pyrophosphatase from Mycobacterium Tuberculosis To be Published
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6JXF
| Photoswitchable fluorescent protein Gamillus, off-state (pH7.0) | 分子名称: | CHLORIDE ION, GLYCEROL, Green fluorescent protein, ... | 著者 | Nakashima, R, Sakurai, K, shinoda, H, Matsuda, T, Nagai, T. | 登録日 | 2019-04-23 | 公開日 | 2019-11-06 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | 主引用文献 | Acid-Tolerant Reversibly Switchable Green Fluorescent Protein for Super-resolution Imaging under Acidic Conditions. Cell Chem Biol, 26, 2019
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3WCK
| Crystal structure of monomeric photosensitizing fluorescent protein, Supernova | 分子名称: | Monomeric photosenitizing fluorescent protein supernova | 著者 | Sakai, N, Matsuda, T, Takemoto, K, Nagai, T. | 登録日 | 2013-05-27 | 公開日 | 2013-10-02 | 最終更新日 | 2023-11-15 | 実験手法 | X-RAY DIFFRACTION (2.3 Å) | 主引用文献 | SuperNova, a monomeric photosensitizing fluorescent protein for chromophore-assisted light inactivation Sci Rep, 3, 2013
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3A8S
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5Y01
| Acid-tolerant monomeric GFP, Gamillus, non-fluorescence (OFF) state | 分子名称: | Green fluorescent protein, PHOSPHATE ION | 著者 | Nakashima, R, Sakurai, K, Shinoda, H, Matsuda, T, Nagai, T. | 登録日 | 2017-07-14 | 公開日 | 2018-01-17 | 最終更新日 | 2023-11-15 | 実験手法 | X-RAY DIFFRACTION (2.65 Å) | 主引用文献 | Acid-Tolerant Monomeric GFP from Olindias formosa. Cell Chem Biol, 25, 2018
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5Y00
| Acid-tolerant monomeric GFP, Gamillus, fluorescence (ON) state | 分子名称: | CHLORIDE ION, GLYCEROL, Green fluorescent protein, ... | 著者 | Nakashima, R, Sakurai, K, Shinoda, H, Matsuda, T, Nagai, T. | 登録日 | 2017-07-14 | 公開日 | 2018-01-17 | 最終更新日 | 2023-11-15 | 実験手法 | X-RAY DIFFRACTION (1.6 Å) | 主引用文献 | Acid-Tolerant Monomeric GFP from Olindias formosa. Cell Chem Biol, 25, 2018
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1VDY
| NMR Structure of the hypothetical ENTH-VHS domain At3g16270 from Arabidopsis thaliana | 分子名称: | hypothetical protein (RAFL09-17-B18) | 著者 | Lopez-Mendez, B, Pantoja-Uceda, D, Tomizawa, T, Koshiba, S, Kigawa, T, Shirouzu, M, Terada, T, Inoue, M, Yabuki, T, Aoki, M, Seki, E, Matsuda, T, Hirota, H, Yoshida, M, Tanaka, A, Osanai, T, Seki, M, Shinozaki, K, Yokoyama, S, Guntert, P, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 2004-03-25 | 公開日 | 2005-05-03 | 最終更新日 | 2023-12-27 | 実験手法 | SOLUTION NMR | 主引用文献 | Solution structure of the hypothetical ENTH-VHS domain AT3G16270 from arabidopsis thaliana To be Published
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2FYH
| Solution structure of the 2'-5' RNA ligase-like protein from Pyrococcus furiosus | 分子名称: | putative integral membrane transport protein | 著者 | Okada, K, Matsuda, T, Sakamoto, T, Muto, Y, Yokoyama, S, Kanai, A, Kawai, G, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 2006-02-08 | 公開日 | 2007-02-20 | 最終更新日 | 2024-05-01 | 実験手法 | SOLUTION NMR | 主引用文献 | Characterization of a heat-stable enzyme possessing GTP-dependent RNA ligase activity from a hyperthermophilic archaeon, Pyrococcus furiosus Rna, 15, 2009
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1UGK
| Solution structure of the first C2 domain of synaptotagmin IV from human fetal brain (KIAA1342) | 分子名称: | Synaptotagmin IV | 著者 | Nagashima, T, Hayashi, F, Shirouzu, M, Terada, T, Kigawa, T, Inoue, M, Yabuki, T, Aoki, M, Seki, E, Matsuda, T, Hirota, H, Yoshida, M, Tanaka, A, Osanai, T, Matsuo, Y, Ohara, O, Nagase, T, Kikuno, R, Nakayama, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 2003-06-16 | 公開日 | 2003-12-16 | 最終更新日 | 2023-12-27 | 実験手法 | SOLUTION NMR | 主引用文献 | Solution structure of the first C2 domain of synaptotagmin IV from human fetal brain (KIAA1342) To be Published
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1UG8
| NMR structure of the R3H domain from Poly(A)-specific Ribonuclease | 分子名称: | Poly(A)-specific Ribonuclease | 著者 | Nagata, T, Muto, Y, Hayami, N, Uda, H, Shirouzu, M, Terada, T, Kigawa, T, Inoue, M, Yabuki, T, Aoki, M, Seki, E, Matsuda, T, Hirota, H, Yoshida, M, Kobayashi, N, Tanaka, A, Osanai, T, Matsuo, Y, Arakawa, T, Carninci, P, Kawai, J, Hayashizaki, Y, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 2003-06-15 | 公開日 | 2004-08-17 | 最終更新日 | 2023-12-27 | 実験手法 | SOLUTION NMR | 主引用文献 | NMR structure of the R3H domain from Poly(A)-specific Ribonuclease To be Published
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1UG1
| SH3 domain of Hypothetical protein BAA76854.1 | 分子名称: | KIAA1010 protein | 著者 | Nagata, T, Muto, Y, Kamewari, Y, Shirouzu, M, Terada, T, Kigawa, T, Inoue, M, Yabuki, T, Aoki, M, Seki, E, Matsuda, T, Hirota, H, Yoshida, M, Kobayashi, N, Tanaka, A, Osanai, T, Matsuo, Y, Ohara, O, Nagase, T, Kikuno, R, Nakayama, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 2003-06-11 | 公開日 | 2003-12-11 | 最終更新日 | 2023-12-27 | 実験手法 | SOLUTION NMR | 主引用文献 | NMR structure of SH3 domain of Hypothetical protein BAA76854.1 To be Published
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1UGJ
| Solution structure of a murine hypothetical protein from RIKEN cDNA 2310057J16 | 分子名称: | RIKEN cDNA 2310057J16 protein | 著者 | Nagashima, T, Hayashi, F, Shirouzu, M, Terada, T, Kigawa, T, Inoue, M, Yabuki, T, Aoki, M, Seki, E, Matsuda, T, Hirota, H, Yoshida, M, Tanaka, A, Osanai, T, Arakawa, T, Carninci, P, Kawai, J, Hayashizaki, Y, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 2003-06-16 | 公開日 | 2004-08-03 | 最終更新日 | 2023-12-27 | 実験手法 | SOLUTION NMR | 主引用文献 | Solution structure of a murine hypothetical protein from RIKEN cDNA 2310057J16 To be Published
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1UFW
| Solution structure of RNP domain in Synaptojanin 2 | 分子名称: | Synaptojanin 2 | 著者 | He, F, Muto, Y, Ushikoshi, R, Shirouzu, M, Terada, T, Kigawa, T, Inoue, M, Yabuki, T, Aoki, M, Seki, E, Matsuda, T, Hirota, H, Yoshida, M, Kobayashi, N, Tanaka, A, Osanai, T, Matsuo, Y, Ohara, O, Nagase, T, Kikuno, R, Nakayama, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 2003-06-10 | 公開日 | 2003-12-10 | 最終更新日 | 2023-12-27 | 実験手法 | SOLUTION NMR | 主引用文献 | Solution structure of RNP domain in Synaptojanin 2 To be Published
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