2GGQ
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![BU of 2ggq by Molmil](/molmil-images/mine/2ggq) | complex of hypothetical glucose-1-phosphate thymidylyltransferase from sulfolobus tokodaii | Descriptor: | 401aa long hypothetical glucose-1-phosphate thymidylyltransferase, IODIDE ION, THYMIDINE-5'-TRIPHOSPHATE | Authors: | Rajakannan, V, Mizushima, T, Suzuki, A, Masui, R, Kuramitsu, S, Yamane, T. | Deposit date: | 2006-03-24 | Release date: | 2007-03-24 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | complex of hypothetical glucose-1-phosphate thymidylyltransferase from sulfolobus tokodaii To be published
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3W34
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![BU of 3w34 by Molmil](/molmil-images/mine/3w34) | Ternary complex of Thermus thermophilus HB8 uridine-cytidine kinase with substrates | Descriptor: | 4-AMINO-1-BETA-D-RIBOFURANOSYL-2(1H)-PYRIMIDINONE, PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER, Uridine kinase | Authors: | Tomoike, F, Nakagawa, N, Masui, R, Kuramitsu, S. | Deposit date: | 2012-12-10 | Release date: | 2013-12-11 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (1.91 Å) | Cite: | Structural and Biochemical Studies on the Reaction Mechanism of Uridine-Cytidine Kinase Protein J., 34, 2015
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2GGO
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![BU of 2ggo by Molmil](/molmil-images/mine/2ggo) | Crystal Structure of glucose-1-phosphate thymidylyltransferase from Sulfolobus tokodaii | Descriptor: | 401aa long hypothetical glucose-1-phosphate thymidylyltransferase | Authors: | Rajakannan, V, Mizushima, T, Suzuki, A, Masui, R, Kuramitsu, S, Yamane, T. | Deposit date: | 2006-03-24 | Release date: | 2007-03-24 | Last modified: | 2011-07-13 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Crystal Structure of glucose-1-phosphate thymidylyltransferase from
Sulfolobus tokodaii To be published
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3W5W
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![BU of 3w5w by Molmil](/molmil-images/mine/3w5w) | Mn2+-GMP complex of nanoRNase (Nrn) from Bacteroides fragilis | Descriptor: | GUANOSINE-5'-MONOPHOSPHATE, MANGANESE (II) ION, Putative exopolyphosphatase-related protein | Authors: | Uemura, Y, Nakagawa, N, Wakamatsu, T, Montelione, G.T, Hunt, J.F, Masui, R, Kuramitsu, S. | Deposit date: | 2013-02-07 | Release date: | 2013-07-10 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.95 Å) | Cite: | Crystal structure of the ligand-binding form of nanoRNase from Bacteroides fragilis, a member of the DHH/DHHA1 phosphoesterase family of proteins. Febs Lett., 587, 2013
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3W8R
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![BU of 3w8r by Molmil](/molmil-images/mine/3w8r) | Mutant structure of Thermus thermophilus HB8 uridine-cytidine kinase | Descriptor: | 4-AMINO-1-BETA-D-RIBOFURANOSYL-2(1H)-PYRIMIDINONE, PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER, Uridine kinase | Authors: | Tomoike, F, Nakagawa, N, Masui, R, Kuramitsu, S. | Deposit date: | 2013-03-21 | Release date: | 2014-03-26 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (2.5 Å) | Cite: | Indispensable residue for uridine binding in the uridine-cytidine kinase family. Biochem Biophys Rep, 11, 2017
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1WYT
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![BU of 1wyt by Molmil](/molmil-images/mine/1wyt) | Crystal structure of glycine decarboxylase (P-protein) of the glycine cleavage system, in apo form | Descriptor: | glycine dehydrogenase (decarboxylating) subunit 1, glycine dehydrogenase subunit 2 (P-protein) | Authors: | Nakai, T, Nakagawa, N, Maoka, N, Masui, R, Kuramitsu, S, Kamiya, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | Deposit date: | 2005-02-17 | Release date: | 2005-04-05 | Last modified: | 2024-04-03 | Method: | X-RAY DIFFRACTION (2.4 Å) | Cite: | Structure of P-protein of the glycine cleavage system: implications for nonketotic hyperglycinemia Embo J., 24, 2005
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1WIY
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![BU of 1wiy by Molmil](/molmil-images/mine/1wiy) | Crystal Structure Analysis of a 6-coordinated Cytochorome P450 from Thermus thermophilus HB8 | Descriptor: | Cytochrome P450, PROTOPORPHYRIN IX CONTAINING FE | Authors: | Kousumi, Y, Nakagawa, N, Kaneko, M, Yamamoto, H, Masui, R, Kuramitsu, S, Ueyama, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | Deposit date: | 2004-05-28 | Release date: | 2004-11-28 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Crystal Structure Analysis of Cytochrome P450 from Thermus thermophilus HB8 To be Published
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1WKK
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![BU of 1wkk by Molmil](/molmil-images/mine/1wkk) | |
1WKL
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![BU of 1wkl by Molmil](/molmil-images/mine/1wkl) | Crystal Structure of Nucleoside Diphosphate Kinase from Thermus thermophilus HB8 in Complex with ATP and ADP | Descriptor: | ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ... | Authors: | Takeishi, S, Nakagawa, N, Masui, R, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | Deposit date: | 2004-06-01 | Release date: | 2005-08-23 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | Crystal Structure of Nucleoside Diphosphate Kinase from Thermus thermophilus HB8 To be Published
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1WUQ
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![BU of 1wuq by Molmil](/molmil-images/mine/1wuq) | Structure of GTP cyclohydrolase I Complexed with 8-oxo-GTP | Descriptor: | 8-OXO-GUANOSINE-5'-TRIPHOSPHATE, GTP cyclohydrolase I, ZINC ION | Authors: | Tanaka, Y, Nakagawa, N, Masui, R, Yokoyama, S, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | Deposit date: | 2004-12-08 | Release date: | 2005-07-19 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Novel reaction mechanism of GTP cyclohydrolase I. High-resolution X-ray crystallography of Thermus thermophilus HB8 enzyme complexed with a transition state analogue, the 8-oxoguanine derivative J.Biochem.(Tokyo), 138, 2005
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1WYV
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![BU of 1wyv by Molmil](/molmil-images/mine/1wyv) | Crystal structure of glycine decarboxylase (P-protein) of the glycine cleavage system, in inhibitor-bound form | Descriptor: | (AMINOOXY)ACETIC ACID, PYRIDOXAL-5'-PHOSPHATE, glycine dehydrogenase (decarboxylating) subunit 1, ... | Authors: | Nakai, T, Nakagawa, N, Maoka, N, Masui, R, Kuramitsu, S, Kamiya, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | Deposit date: | 2005-02-17 | Release date: | 2005-04-05 | Last modified: | 2024-04-03 | Method: | X-RAY DIFFRACTION (2.4 Å) | Cite: | Structure of P-protein of the glycine cleavage system: implications for nonketotic hyperglycinemia Embo J., 24, 2005
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1WKJ
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![BU of 1wkj by Molmil](/molmil-images/mine/1wkj) | |
1WUR
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![BU of 1wur by Molmil](/molmil-images/mine/1wur) | Structure of GTP cyclohydrolase I Complexed with 8-oxo-dGTP | Descriptor: | 8-OXO-2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, GTP cyclohydrolase I, ZINC ION | Authors: | Tanaka, Y, Nakagawa, N, Masui, R, Yokoyama, S, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | Deposit date: | 2004-12-08 | Release date: | 2005-07-19 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (1.82 Å) | Cite: | Novel reaction mechanism of GTP cyclohydrolase I. High-resolution X-ray crystallography of Thermus thermophilus HB8 enzyme complexed with a transition state analogue, the 8-oxoguanine derivative J.Biochem.(Tokyo), 138, 2005
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1WYU
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![BU of 1wyu by Molmil](/molmil-images/mine/1wyu) | Crystal structure of glycine decarboxylase (P-protein) of the glycine cleavage system, in holo form | Descriptor: | PYRIDOXAL-5'-PHOSPHATE, glycine dehydrogenase (decarboxylating) subunit 1, glycine dehydrogenase subunit 2 (P-protein) | Authors: | Nakai, T, Nakagawa, N, Maoka, N, Masui, R, Kuramitsu, S, Kamiya, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | Deposit date: | 2005-02-17 | Release date: | 2005-04-05 | Last modified: | 2011-07-13 | Method: | X-RAY DIFFRACTION (2.1 Å) | Cite: | Structure of P-protein of the glycine cleavage system: implications for nonketotic hyperglycinemia Embo J., 24, 2005
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2D5Y
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![BU of 2d5y by Molmil](/molmil-images/mine/2d5y) | Aspartate Aminotransferase Mutant MC With Isovaleric Acid | Descriptor: | Aspartate aminotransferase, ISOVALERIC ACID, PYRIDOXAL-5'-PHOSPHATE | Authors: | Tanaka, Y, Nakagawa, N, Tada, H, Yano, T, Masui, R, Kuramitsu, S. | Deposit date: | 2005-11-08 | Release date: | 2006-11-14 | Last modified: | 2021-11-10 | Method: | X-RAY DIFFRACTION (1.98 Å) | Cite: | The Structures of Aspartate Aminotransferase with Mutations of Non-Active-Site Residues To be Published
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2D7Y
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![BU of 2d7y by Molmil](/molmil-images/mine/2d7y) | Aspartate Aminotransferase Mutant MA | Descriptor: | Aspartate aminotransferase, PYRIDOXAL-5'-PHOSPHATE | Authors: | Tanaka, Y, Nakagawa, N, Tada, H, Yano, T, Masui, R, Kuramitsu, S. | Deposit date: | 2005-11-30 | Release date: | 2006-11-14 | Last modified: | 2021-11-10 | Method: | X-RAY DIFFRACTION (2.66 Å) | Cite: | The Structures of Aspartate Aminotransferase with Mutations of Non-Active-Site Residues To be Published
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2D3Y
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![BU of 2d3y by Molmil](/molmil-images/mine/2d3y) | Crystal structure of uracil-DNA glycosylase from Thermus Thermophilus HB8 | Descriptor: | 2'-DEOXYURIDINE-5'-MONOPHOSPHATE, ACETATE ION, IRON/SULFUR CLUSTER, ... | Authors: | Kosaka, H, Nakagawa, N, Masui, R, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | Deposit date: | 2005-10-04 | Release date: | 2006-10-17 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (1.55 Å) | Cite: | Crystal structure of family 5 uracil-DNA glycosylase bound to DNA. J.Mol.Biol., 373, 2007
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2D7Z
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![BU of 2d7z by Molmil](/molmil-images/mine/2d7z) | Aspartate Aminotransferase Mutant MAB Complexed with Maleic Acid | Descriptor: | Aspartate aminotransferase, MALEIC ACID, PYRIDOXAL-5'-PHOSPHATE | Authors: | Tanaka, Y, Nakagawa, N, Tada, H, Yano, T, Masui, R, Kuramitsu, S. | Deposit date: | 2005-11-30 | Release date: | 2006-11-14 | Last modified: | 2021-11-10 | Method: | X-RAY DIFFRACTION (2.65 Å) | Cite: | The Structures of Aspartate Aminotransferase with Mutations of Non-Active-Site Residues To be Published
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2D66
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![BU of 2d66 by Molmil](/molmil-images/mine/2d66) | Aspartate Aminotransferase Mutant MAB | Descriptor: | Aspartate aminotransferase, PYRIDOXAL-5'-PHOSPHATE, SULFATE ION | Authors: | Tanaka, Y, Nakagawa, N, Tada, H, Yano, T, Masui, R, Kuramitsu, S. | Deposit date: | 2005-11-09 | Release date: | 2006-11-14 | Last modified: | 2021-11-10 | Method: | X-RAY DIFFRACTION (2.18 Å) | Cite: | The Structures of Aspartate Aminotransferase with Mutations of Non-Active-Site Residues To be Published
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2D65
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![BU of 2d65 by Molmil](/molmil-images/mine/2d65) | Aspartate Aminotransferase Mutant MABC | Descriptor: | Aspartate aminotransferase, PYRIDOXAL-5'-PHOSPHATE, SULFATE ION | Authors: | Tanaka, Y, Nakagawa, N, Tada, H, Yano, T, Masui, R, Kuramitsu, S. | Deposit date: | 2005-11-09 | Release date: | 2006-11-14 | Last modified: | 2021-11-10 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | The Structures of Aspartate Aminotransferase with Mutations of Non-Active-Site Residues To be Published
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2DKF
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![BU of 2dkf by Molmil](/molmil-images/mine/2dkf) | Crystal Structure of TTHA0252 from Thermus thermophilus HB8, a RNA Degradation Protein of the Metallo-beta-lactamase Superfamily | Descriptor: | ZINC ION, metallo-beta-lactamase superfamily protein | Authors: | Ishikawa, I, Nakagawa, N, Kuramitsu, S, Yokoyama, S, Masui, R, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | Deposit date: | 2006-04-10 | Release date: | 2006-12-05 | Last modified: | 2011-07-13 | Method: | X-RAY DIFFRACTION (2.8 Å) | Cite: | Crystal structure of TTHA0252 from Thermus thermophilus HB8, a RNA degradation protein of the metallo-beta-lactamase superfamily J.Biochem.(Tokyo), 140, 2006
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2DEM
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![BU of 2dem by Molmil](/molmil-images/mine/2dem) | Crystal structure of Uracil-DNA glycosylase in complex with AP:A containing DNA | Descriptor: | 5'-D(*AP*TP*GP*TP*TP*GP*CP*(D1P)P*TP*TP*AP*GP*TP*CP*C)-3', 5'-D(*GP*GP*AP*CP*TP*AP*AP*AP*GP*CP*AP*AP*CP*A)-3', DIHYDROGENPHOSPHATE ION, ... | Authors: | Kosaka, H, Nakagawa, N, Masui, R, Hoseki, J, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | Deposit date: | 2006-02-13 | Release date: | 2007-04-24 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (1.95 Å) | Cite: | Crystal structure of family 5 uracil-DNA glycosylase bound to DNA. J.Mol.Biol., 373, 2007
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2EC2
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![BU of 2ec2 by Molmil](/molmil-images/mine/2ec2) | Crystal structure of transposase from Sulfolobus tokodaii | Descriptor: | 136aa long hypothetical transposase, SULFATE ION | Authors: | Kawai, K, Suzuki, A, Kuramitsu, S, Masui, R, Yamane, T. | Deposit date: | 2007-02-09 | Release date: | 2007-02-27 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2.8 Å) | Cite: | Crystal structure of transposase from Sulfolobus tokodaii To be Published
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2D64
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![BU of 2d64 by Molmil](/molmil-images/mine/2d64) | Aspartate Aminotransferase Mutant MABC With Isovaleric Acid | Descriptor: | Aspartate aminotransferase, ISOVALERIC ACID, PYRIDOXAL-5'-PHOSPHATE | Authors: | Tanaka, Y, Nakagawa, N, Tada, H, Yano, T, Masui, R, Kuramitsu, S. | Deposit date: | 2005-11-09 | Release date: | 2006-11-14 | Last modified: | 2021-11-10 | Method: | X-RAY DIFFRACTION (2.05 Å) | Cite: | The Structures of Aspartate Aminotransferase with Mutations of Non-Active-Site Residues To be Published
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2D63
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![BU of 2d63 by Molmil](/molmil-images/mine/2d63) | Aspartate Aminotransferase Mutant MA With Isovaleric Acid | Descriptor: | Aspartate aminotransferase, ISOVALERIC ACID, PYRIDOXAL-5'-PHOSPHATE | Authors: | Tanaka, Y, Nakagawa, N, Tada, H, Yano, T, Masui, R, Kuramitsu, S. | Deposit date: | 2005-11-09 | Release date: | 2006-11-14 | Last modified: | 2021-11-10 | Method: | X-RAY DIFFRACTION (2.05 Å) | Cite: | The Structures of Aspartate Aminotransferase with Mutations of Non-Active-Site Residues To be Published
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