2RPD
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![BU of 2rpd by Molmil](/molmil-images/mine/2rpd) | Mhr1p-bound ssDNA | Descriptor: | DNA (5'-D(*DTP*DAP*DCP*DG)-3') | Authors: | Masuda, T, Ito, Y, Shibata, T, Mikawa, T. | Deposit date: | 2008-05-15 | Release date: | 2009-05-26 | Last modified: | 2024-05-29 | Method: | SOLUTION NMR | Cite: | A non-canonical DNA structure enables homologous recombination in various genetic systems J.Biol.Chem., 284, 2009
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5WR8
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![BU of 5wr8 by Molmil](/molmil-images/mine/5wr8) | Thaumatin structure determined by SACLA at 1.55 Angstrom | Descriptor: | L(+)-TARTARIC ACID, Thaumatin I | Authors: | Masuda, T, Suzuki, M, Inoue, S, Sugahara, M. | Deposit date: | 2016-12-01 | Release date: | 2017-11-29 | Last modified: | 2023-09-06 | Method: | X-RAY DIFFRACTION (1.55 Å) | Cite: | Hydroxyethyl cellulose matrix applied to serial crystallography Sci Rep, 7, 2017
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6L8S
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![BU of 6l8s by Molmil](/molmil-images/mine/6l8s) | High resolution crystal structure of crustacean hemocyanin. | Descriptor: | 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, ... | Authors: | Masuda, T, Mikami, B, Baba, S. | Deposit date: | 2019-11-07 | Release date: | 2020-05-27 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1.58 Å) | Cite: | The high-resolution crystal structure of lobster hemocyanin shows its enzymatic capability as a phenoloxidase. Arch.Biochem.Biophys., 688, 2020
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4TOQ
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![BU of 4toq by Molmil](/molmil-images/mine/4toq) | |
5KXU
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![BU of 5kxu by Molmil](/molmil-images/mine/5kxu) | Structure Proteinase K determined by SACLA | Descriptor: | CALCIUM ION, NITRATE ION, Proteinase K | Authors: | Masuda, T, Suzuki, M, Inoue, S, Numata, K, Sugahara, M. | Deposit date: | 2016-07-20 | Release date: | 2017-06-07 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.2 Å) | Cite: | Atomic resolution structure of serine protease proteinase K at ambient temperature. Sci Rep, 7, 2017
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3VHF
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![BU of 3vhf by Molmil](/molmil-images/mine/3vhf) | plant thaumatin I at pH 8.0 | Descriptor: | GLYCEROL, Thaumatin I | Authors: | Masuda, T, Mikami, B, Kitabatake, N, Tani, F. | Deposit date: | 2011-08-24 | Release date: | 2012-05-16 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.39 Å) | Cite: | Atomic structure of the sweet-tasting protein thaumatin I at pH 8.0 reveals the large disulfide-rich region in domain II to be sensitive to a pH change Biochem.Biophys.Res.Commun., 419, 2012
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3VHG
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![BU of 3vhg by Molmil](/molmil-images/mine/3vhg) | |
5KXV
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![BU of 5kxv by Molmil](/molmil-images/mine/5kxv) | Structure Proteinase K at 0.98 Angstroms | Descriptor: | CALCIUM ION, GLYCEROL, NITRATE ION, ... | Authors: | Masuda, T, Suzuki, M, Inoue, S, Numata, K, Sugahara, M. | Deposit date: | 2016-07-20 | Release date: | 2017-06-07 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (0.98 Å) | Cite: | Atomic resolution structure of serine protease proteinase K at ambient temperature. Sci Rep, 7, 2017
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2RPF
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![BU of 2rpf by Molmil](/molmil-images/mine/2rpf) | RecO-bound ssDNA | Descriptor: | DNA (5'-D(*DTP*DAP*DCP*DG)-3') | Authors: | Masuda, T, Ito, Y, Shibata, T, Mikawa, T. | Deposit date: | 2008-05-15 | Release date: | 2009-05-26 | Last modified: | 2024-05-15 | Method: | SOLUTION NMR | Cite: | A non-canonical DNA structure enables homologous recombination in various genetic systems J.Biol.Chem., 284, 2009
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2RPH
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![BU of 2rph by Molmil](/molmil-images/mine/2rph) | RecT-bound ssDNA | Descriptor: | DNA (5'-D(*DTP*DAP*DCP*DG)-3') | Authors: | Masuda, T, Ito, Y, Shibata, T, Mikawa, T. | Deposit date: | 2008-05-15 | Release date: | 2009-05-26 | Last modified: | 2024-05-15 | Method: | SOLUTION NMR | Cite: | A non-canonical DNA structure enables homologous recombination in various genetic systems J.Biol.Chem., 284, 2009
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2RPE
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![BU of 2rpe by Molmil](/molmil-images/mine/2rpe) | hsRad51-bound ssDNA | Descriptor: | DNA (5'-D(*DTP*DAP*DCP*DG)-3') | Authors: | Masuda, T, Ito, Y, Shibata, T, Mikawa, T. | Deposit date: | 2008-05-15 | Release date: | 2009-05-26 | Last modified: | 2024-05-15 | Method: | SOLUTION NMR | Cite: | A non-canonical DNA structure enables homologous recombination in various genetic systems J.Biol.Chem., 284, 2009
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5GQP
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![BU of 5gqp by Molmil](/molmil-images/mine/5gqp) | Thaumatin Structure at pH 8.0, orthorhombic type1 | Descriptor: | Thaumatin I | Authors: | Masuda, T, Sano, A, Murata, K, Okubo, K, Suzuki, M, Mikami, B. | Deposit date: | 2016-08-08 | Release date: | 2017-08-09 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.296 Å) | Cite: | Thaumatin Structure at pH 8.0, orthorhombic type1 To Be Published
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5SW1
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![BU of 5sw1 by Molmil](/molmil-images/mine/5sw1) | Thaumatin Structure at pH 6.0 | Descriptor: | (CARBAMOYLMETHYL-CARBOXYMETHYL-AMINO)-ACETIC ACID, Thaumatin I | Authors: | Masuda, T, Sano, A, Murata, K, Okubo, K, Suzuki, M, Mikami, B. | Deposit date: | 2016-08-08 | Release date: | 2017-08-09 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.1 Å) | Cite: | Thaumatin Structure at pH 6.0 To Be Published
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5SW2
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![BU of 5sw2 by Molmil](/molmil-images/mine/5sw2) | Thaumatin Structure at pH 6.0, orthorhombic type1 | Descriptor: | GLYCEROL, Thaumatin I | Authors: | Masuda, T, Sano, A, Murata, K, Okubo, K, Suzuki, M, Mikami, B. | Deposit date: | 2016-08-08 | Release date: | 2017-08-09 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.2 Å) | Cite: | Thaumatin Structure at pH 6.0, orthorhombic type1 To Be Published
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5SW0
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![BU of 5sw0 by Molmil](/molmil-images/mine/5sw0) | |
3VJQ
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![BU of 3vjq by Molmil](/molmil-images/mine/3vjq) | Recombinant thaumatin at pH 8.0 with hydrogen atoms | Descriptor: | GLYCEROL, Thaumatin I | Authors: | Masuda, T, Mikami, B, Tani, F. | Deposit date: | 2011-10-27 | Release date: | 2012-05-16 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1 Å) | Cite: | Atomic structure of the sweet-tasting protein thaumatin I at pH 8.0 reveals the large disulfide-rich region in domain II to be sensitive to a pH change Biochem.Biophys.Res.Commun., 419, 2012
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3VNX
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![BU of 3vnx by Molmil](/molmil-images/mine/3vnx) | Crystal structure of ferritin from multicellular green algae, Ulva pertusa. | Descriptor: | CALCIUM ION, ferritin | Authors: | Masuda, T, Morimoto, S.I, Mikami, B, Toyohara, H. | Deposit date: | 2012-01-18 | Release date: | 2012-03-28 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (2.4 Å) | Cite: | The extension peptide of plant ferritin from sea lettuce contributes to shell stability and surface hydrophobicity. Protein Sci., 21, 2012
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4XVB
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![BU of 4xvb by Molmil](/molmil-images/mine/4xvb) | |
3A68
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![BU of 3a68 by Molmil](/molmil-images/mine/3a68) | Crystal structure of plant ferritin reveals a novel metal binding site that functions as a transit site for metal transfer in ferritin | Descriptor: | ACETIC ACID, CALCIUM ION, Ferritin-4, ... | Authors: | Masuda, T, Goto, F, Yoshihara, T, Mikami, B. | Deposit date: | 2009-08-26 | Release date: | 2009-12-08 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Crystal structure of plant ferritin reveals a novel metal binding site that functions as a transit site for metal transfer in ferritin J.Biol.Chem., 285, 2010
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3A9Q
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![BU of 3a9q by Molmil](/molmil-images/mine/3a9q) | Crystal Structure Analysis of E173A variant of the soybean ferritin SFER4 | Descriptor: | ACETIC ACID, CALCIUM ION, Ferritin-4, ... | Authors: | Masuda, T, Goto, F, Yoshihara, T, Mikami, B. | Deposit date: | 2009-11-05 | Release date: | 2009-12-08 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.896 Å) | Cite: | Crystal structure of plant ferritin reveals a novel metal binding site that functions as a transit site for metal transfer in ferritin J.Biol.Chem., 285, 2010
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8JZ8
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![BU of 8jz8 by Molmil](/molmil-images/mine/8jz8) | Subatomic structure of orthorhombic thaumatin at 0.89 Angstroms | Descriptor: | DI(HYDROXYETHYL)ETHER, Thaumatin I | Authors: | Masuda, T, Suzuki, M, Yamasaki, M, Mikami, B. | Deposit date: | 2023-07-04 | Release date: | 2024-05-15 | Method: | X-RAY DIFFRACTION (0.89 Å) | Cite: | Subatomic structure of orthorhombic thaumatin at 0.89 angstrom reveals that highly flexible conformations are crucial for thaumatin sweetness. Biochem.Biophys.Res.Commun., 703, 2024
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3WXS
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![BU of 3wxs by Molmil](/molmil-images/mine/3wxs) | Thaumatin structure determined by SPring-8 Angstrom Compact free electron Laser (SACLA) | Descriptor: | L(+)-TARTARIC ACID, thaumatin I | Authors: | Masuda, T, Nango, E, Sugahara, M, Mizohata, E, Tanaka, T, Tanaka, R, Suzuki, M, Mikami, B, Iwata, S. | Deposit date: | 2014-08-07 | Release date: | 2014-11-05 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Grease matrix as a versatile carrier of proteins for serial crystallography Nat. Methods, 12, 2015
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3WKY
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![BU of 3wky by Molmil](/molmil-images/mine/3wky) | Crystal structure of hemolymph type prophenoloxidase (proPOb) from crustacean | Descriptor: | 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ... | Authors: | Masuda, T, Mikami, B. | Deposit date: | 2013-11-02 | Release date: | 2014-04-23 | Last modified: | 2022-08-24 | Method: | X-RAY DIFFRACTION (1.801 Å) | Cite: | The crystal structure of a crustacean prophenoloxidase provides a clue to understanding the functionality of the type 3 copper proteins. Febs J., 281, 2014
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6A4U
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![BU of 6a4u by Molmil](/molmil-images/mine/6a4u) | The first crystal structure of crustacean ferritin that is a hybrid type of H and L ferritin | Descriptor: | 1,2-ETHANEDIOL, CHLORIDE ION, Ferritin, ... | Authors: | Masuda, T, Mikami, B, Zang, J, Zhao, G. | Deposit date: | 2018-06-21 | Release date: | 2018-08-22 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1.16 Å) | Cite: | The first crystal structure of crustacean ferritin that is a hybrid type of H and L ferritin Protein Sci., 27, 2018
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3AJP
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![BU of 3ajp by Molmil](/molmil-images/mine/3ajp) | Crystal structure of human H ferritin E140A mutant | Descriptor: | Ferritin heavy chain, MAGNESIUM ION | Authors: | Masuda, T, Mikami, B. | Deposit date: | 2010-06-11 | Release date: | 2010-08-25 | Last modified: | 2024-04-03 | Method: | X-RAY DIFFRACTION (1.901 Å) | Cite: | The universal mechanism for iron translocation to the ferroxidase site in ferritin, which is mediated by the well conserved transit site Biochem.Biophys.Res.Commun., 400, 2010
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