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PDB: 51689 results

5BYZ
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ERK5 in complex with small molecule
Descriptor: 4-({5-fluoro-4-[2-methyl-1-(propan-2-yl)-1H-imidazol-5-yl]pyrimidin-2-yl}amino)-N-[2-(piperidin-1-yl)ethyl]benzamide, GLYCEROL, Mitogen-activated protein kinase 7
Authors:Chen, H, Tucker, J, Wang, X, Gavine, P.R, Philips, C, Augustin, M.A, Schreiner, P, Steinbacher, S, Preston, M, Ogg, D.
Deposit date:2015-06-11
Release date:2016-05-04
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Discovery of a novel allosteric inhibitor-binding site in ERK5: comparison with the canonical kinase hinge ATP-binding site.
Acta Crystallogr D Struct Biol, 72, 2016
5C0U
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Crystal structure of the copper-bound form of MerB mutant D99S
Descriptor: Alkylmercury lyase, BROMIDE ION, COPPER (II) ION
Authors:Wahba, H.M, Lecoq, L, Stevenson, M, Mansour, A, Cappadocia, L, Lafrance-Vanasse, J, Wilkinson, K.J, Sygusch, J, Wilcox, D.E, Omichinski, J.G.
Deposit date:2015-06-12
Release date:2016-02-03
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.87 Å)
Cite:Structural and Biochemical Characterization of a Copper-Binding Mutant of the Organomercurial Lyase MerB: Insight into the Key Role of the Active Site Aspartic Acid in Hg-Carbon Bond Cleavage and Metal Binding Specificity.
Biochemistry, 55, 2016
1K1B
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BU of 1k1b by Molmil
Crystal structure of the ankyrin repeat domain of Bcl-3: a unique member of the IkappaB protein family
Descriptor: B-cell lymphoma 3-encoded protein
Authors:Michel, F, Soler-Lopez, M, Petosa, C, Cramer, P, Siebenlist, U, Mueller, C.W.
Deposit date:2001-09-24
Release date:2001-11-21
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of the ankyrin repeat domain of Bcl-3: a unique member of the IkappaB protein family.
EMBO J., 20, 2001
6JAO
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BU of 6jao by Molmil
Crystal structure of ABC transporter alpha-glycoside-binding mutant protein R356A in complex with palatinose
Descriptor: 1,2-ETHANEDIOL, ABC transporter, periplasmic substrate-binding protein, ...
Authors:Kanaujia, S.P, Chandravanshi, M, Gogoi, P.
Deposit date:2019-01-24
Release date:2019-10-30
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Structural and thermodynamic correlation illuminates the selective transport mechanism of disaccharide alpha-glycosides through ABC transporter.
Febs J., 287, 2020
4LHQ
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Ricin A chain bound to camelid nanobody (VHH8)
Descriptor: Camelid nanobody, Ricin
Authors:Rudolph, M.J, Cheung, J, Franklin, M, Burshteyn, F, Cassidy, M, Gary, E, Mantis, N.
Deposit date:2013-07-01
Release date:2014-06-11
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal Structures of Ricin Toxin's Enzymatic Subunit (RTA) in Complex with Neutralizing and Non-Neutralizing Single-Chain Antibodies.
J.Mol.Biol., 426, 2014
1K1W
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BU of 1k1w by Molmil
Crystal structure of 4-alpha-glucanotransferase from thermococcus litoralis
Descriptor: 4-ALPHA-GLUCANOTRANSFERASE, CALCIUM ION, SULFATE ION, ...
Authors:Imamura, H, Fushinobu, S, Kumasaka, T, Yamamoto, M, Jeon, B.S, Wakagi, T, Matsuzawa, H.
Deposit date:2001-09-26
Release date:2003-06-17
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structures of 4-alpha-glucanotransferase from Thermococcus litoralis and its complex with an inhibitor
J.BIOL.CHEM., 278, 2003
3NXZ
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BU of 3nxz by Molmil
Crystal Structure of UreE from Helicobacter pylori (Cu2+ bound form)
Descriptor: COPPER (II) ION, Urease accessory protein ureE
Authors:Shi, R, Munger, C, Assinas, A, Matte, A, Cygler, M, Montreal-Kingston Bacterial Structural Genomics Initiative (BSGI)
Deposit date:2010-07-14
Release date:2010-08-25
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal Structures of Apo and Metal-Bound Forms of the UreE Protein from Helicobacter pylori: Role of Multiple Metal Binding Sites
Biochemistry, 49, 2010
7Z1X
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BU of 7z1x by Molmil
Crystal structure of human Gasdermin D complexed with nanobodies VHH-2 and VHH-6
Descriptor: Gasdermin-D, VHH-2, VHH-6
Authors:Kopp, A, Hagelueken, G, Geyer, M.
Deposit date:2022-02-25
Release date:2023-09-06
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:Pyroptosis inhibiting nanobodies block Gasdermin D pore formation.
Nat Commun, 14, 2023
6EWI
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Oreochromis niloticus CEP120 second C2 domain (C2B) A200P + G307S mutant
Descriptor: Centrosomal protein 120
Authors:van Breugel, M.
Deposit date:2017-11-04
Release date:2018-05-02
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Disease-Associated Mutations in CEP120 Destabilize the Protein and Impair Ciliogenesis.
Cell Rep, 23, 2018
1JJH
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BU of 1jjh by Molmil
E2 DNA-binding Domain from Bovine Papillomavirus Type 1
Descriptor: REGULATORY PROTEIN E2
Authors:Hegde, R.S, Wang, A.F, Kim, S.S, Schapira, M.
Deposit date:2001-07-05
Release date:2001-07-18
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Subunit rearrangement accompanies sequence-specific DNA binding by the bovine papillomavirus-1 E2 protein.
J.Mol.Biol., 276, 1998
4LJB
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BU of 4ljb by Molmil
Structure of a photobleached state of IrisFP under high intensity laser-light
Descriptor: Green to red photoconvertible GPF-like protein EosFP, SULFATE ION, SULFITE ION
Authors:Duan, C, Adam, V, Byrdin, M, Ridard, J, Kieffer-Jacquinod, S, Morlot, C, Arcizet, D, Demachy, I, Bourgeois, D.
Deposit date:2013-07-04
Release date:2013-10-09
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.9019 Å)
Cite:Structural evidence for a two-regime photobleaching mechanism in a reversibly switchable fluorescent protein.
J.Am.Chem.Soc., 135, 2013
7YLB
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BU of 7ylb by Molmil
Two monobodies recognizing the conserved epitopes of SARS-CoV-2 N antigen applicable to the broad COVID-19 diagnosis
Descriptor: NC2, Nucleoprotein, SULFATE ION
Authors:Hu, M, Du, Y, Sun, R, Hao, Q.
Deposit date:2022-07-26
Release date:2023-09-06
Method:X-RAY DIFFRACTION (2.41 Å)
Cite:Two monobodies recognizing the conserved epitopes of SARS-CoV-2 N antigen applicable to the broad COVID-19 diagnosis
To Be Published
5C5Y
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BU of 5c5y by Molmil
Crystal structure of deoxyribose-phosphate aldolase from Colwellia psychrerythraea (hexagonal form)
Descriptor: Deoxyribose-phosphate aldolase, GLYCEROL, UNKNOWN LIGAND
Authors:Weiergraeber, O.H, Dick, M, Pietruszka, J.
Deposit date:2015-06-22
Release date:2016-02-03
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Trading off stability against activity in extremophilic aldolases.
Sci Rep, 6, 2016
6EWP
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BU of 6ewp by Molmil
Mus musculus CEP120 third C2 domain (C2C)
Descriptor: Centrosomal protein of 120 kDa, HEXAETHYLENE GLYCOL
Authors:van Breugel, M, al-Jassar, C.
Deposit date:2017-11-06
Release date:2018-05-02
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Disease-Associated Mutations in CEP120 Destabilize the Protein and Impair Ciliogenesis.
Cell Rep, 23, 2018
4LIX
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BU of 4lix by Molmil
Crystal structure of ent-copalyl diphosphate synthase from Arabidopsis thaliana in complex with (S)-15-aza-14,15-dihydrogeranylgeranyl thiolodiphosphate at 1.55 A resolution
Descriptor: Ent-copalyl diphosphate synthase, chloroplastic, GLYCEROL, ...
Authors:Koksal, M, Christianson, D.W.
Deposit date:2013-07-04
Release date:2013-10-02
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (1.548 Å)
Cite:1.55 angstrom -resolution structure of ent-copalyl diphosphate synthase and exploration of general acid function by site-directed mutagenesis.
Biochim.Biophys.Acta, 1840, 2013
3NSL
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BU of 3nsl by Molmil
Crystal Structure of S100A3 C30A+C68A double mutant expressed in insect cell
Descriptor: GLYCEROL, Protein S100-A3
Authors:Unno, M, Takahara, H, Kizawa, K.
Deposit date:2010-07-02
Release date:2011-03-16
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Refined crystal structures of human Ca(2+)/Zn(2+)-binding S100A3 protein characterized by two disulfide bridges
J.Mol.Biol., 408, 2011
1JSE
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BU of 1jse by Molmil
FULL-MATRIX LEAST-SQUARES REFINEMENT OF TURKEY LYSOZYME
Descriptor: LYSOZYME, N-PROPANOL
Authors:Harata, K, Abe, Y, Muraki, M.
Deposit date:1998-01-05
Release date:1998-04-29
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (1.12 Å)
Cite:Full-matrix least-squares refinement of lysozymes and analysis of anisotropic thermal motion.
Proteins, 30, 1998
6EZC
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BU of 6ezc by Molmil
Crystal Structure of human tRNA-dihydrouridine(20) synthase catalytic domain E294K Q305K double mutant
Descriptor: CHLORIDE ION, FLAVIN MONONUCLEOTIDE, GLYCEROL, ...
Authors:Bou-Nader, C, Bregeon, D, Vincent, G, Fontecave, M, Hamdane, D.
Deposit date:2017-11-14
Release date:2018-09-26
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2 Å)
Cite:Electrostatic Potential in the tRNA Binding Evolution of Dihydrouridine Synthases.
Biochemistry, 57, 2018
5C4J
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Crystal structure of a transcribing RNA Polymerase II complex reveals a complete transcription bubble
Descriptor: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ...
Authors:Barnes, C.O, Calero, M, Malik, I, Spahr, H, Zhang, Q, Pullara, F, Kaplan, C.D, Calero, G.
Deposit date:2015-06-18
Release date:2015-08-26
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (4 Å)
Cite:Crystal Structure of a Transcribing RNA Polymerase II Complex Reveals a Complete Transcription Bubble.
Mol.Cell, 59, 2015
2BZL
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BU of 2bzl by Molmil
CRYSTAL STRUCTURE OF THE HUMAN PROTEIN TYROSINE PHOSPHATASE N14 AT 1. 65 A RESOLUTION
Descriptor: 1,2-ETHANEDIOL, SULFATE ION, TYROSINE-PROTEIN PHOSPHATASE, ...
Authors:Debreczeni, J.E, Barr, A, Eswaran, J, Das, S, Burgess, N, Longman, E, Fedorov, O, Gileadi, O, von Delft, F, Sundstrom, M, Arrowsmith, C, Weigelt, J, Edwards, A, Knapp, S.
Deposit date:2005-08-18
Release date:2005-09-13
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Crystal Structure of Human Protein Tyrosine Phosphatase 14 (Ptpn14) at 1.65-A Resolution.
Proteins, 63, 2006
6JG1
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BU of 6jg1 by Molmil
Crystal structure of barley exohydrolaseI wildtype in complex with 4I,4III,4V-S-trithiocellohexaose
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Barley exohydrolase I, GLYCEROL, ...
Authors:Luang, S, Streltsov, V.A, Hrmova, M.
Deposit date:2019-02-13
Release date:2020-08-19
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:The evolutionary advantage of an aromatic clamp in plant family 3 glycoside exo-hydrolases.
Nat Commun, 13, 2022
6JGB
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Crystal structure of barley exohydrolaseI W286F mutant in complex with methyl 6-thio-beta-gentiobioside
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, ACETATE ION, BETA-D-GLUCAN GLUCOHYDROLASE ISOENZYME EXO1, ...
Authors:Luang, S, Streltsov, V.A, Hrmova, M.
Deposit date:2019-02-13
Release date:2020-08-19
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.47 Å)
Cite:The evolutionary advantage of an aromatic clamp in plant family 3 glycoside exo-hydrolases.
Nat Commun, 13, 2022
6JGG
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Crystal structure of barley exohydrolaseI W434F mutant in complex with methyl 2-thio-beta-sophoroside.
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, ACETATE ION, BETA-D-GLUCAN GLUCOHYDROLASE ISOENZYME EXO1, ...
Authors:Luang, S, Streltsov, V.A, Hrmova, M.
Deposit date:2019-02-14
Release date:2020-08-19
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The evolutionary advantage of an aromatic clamp in plant family 3 glycoside exo-hydrolases.
Nat Commun, 13, 2022
6F0U
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GLIC mutant E35A
Descriptor: ACETATE ION, CHLORIDE ION, DIUNDECYL PHOSPHATIDYL CHOLINE, ...
Authors:Hu, H.D, Delarue, M.
Deposit date:2017-11-20
Release date:2018-01-10
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Full mutational mapping of titratable residues helps to identify proton-sensors involved in the control of channel gating in the Gloeobacter violaceus pentameric ligand-gated ion channel.
PLoS Biol., 15, 2017
6JGQ
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Crystal structure of barley exohydrolaseI W434Y mutant in complex with methyl 2-thio-beta-sophoroside.
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, BETA-D-GLUCAN GLUCOHYDROLASE ISOENZYME EXO1, GLYCEROL, ...
Authors:Luang, S, Streltsov, V.A, Hrmova, M.
Deposit date:2019-02-14
Release date:2020-08-19
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:The evolutionary advantage of an aromatic clamp in plant family 3 glycoside exo-hydrolases.
Nat Commun, 13, 2022

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