Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 52161 results

2AHW
DownloadVisualize
BU of 2ahw by Molmil
Crystal Structure of Acyl-CoA transferase from E. coli O157:H7 (YdiF)-thioester complex with CoA- 2
Descriptor: COENZYME A, putative enzyme YdiF
Authors:Rangarajan, E.S, Li, Y, Ajamian, E, Iannuzzi, P, Kernaghan, S.D, Fraser, M.E, Cylger, M, Matte, A, Montreal-Kingston Bacterial Structural Genomics Initiative (BSGI)
Deposit date:2005-07-28
Release date:2005-11-01
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Crystallographic trapping of the glutamyl-CoA thioester intermediate of family I CoA transferases.
J.Biol.Chem., 280, 2005
7XGW
DownloadVisualize
BU of 7xgw by Molmil
Apo structure of LW domain from Trypanosoma brucei
Descriptor: Transcription elongation factor s-II
Authors:Liao, S, Gao, J, Chen, M, Tu, X.
Deposit date:2022-04-06
Release date:2023-05-31
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Structural basis for evolutionarily conserved interactions between TFIIS and Paf1C.
Int.J.Biol.Macromol., 253, 2023
2AQ6
DownloadVisualize
BU of 2aq6 by Molmil
X-ray crystal structure of mycobacterium tuberculosis pyridoxine 5'-phosphate oxidase complexed with pyridoxal 5'-phosphate at 1.7 a resolution
Descriptor: PYRIDOXAL-5'-PHOSPHATE, PYRIDOXINE 5'-PHOSPHATE OXIDASE
Authors:Biswal, B.K, Cherney, M.M, Wang, M, Garen, C, James, M.N, TB Structural Genomics Consortium (TBSGC)
Deposit date:2005-08-17
Release date:2005-08-30
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structures of Mycobacterium tuberculosispyridoxine 5'-phosphate oxidase and its complexes with flavin mononucleotide and pyridoxal 5'-phosphate.
Acta Crystallogr.,Sect.D, 61, 2005
6TY5
DownloadVisualize
BU of 6ty5 by Molmil
Crystal structure of human TLR8 in complex with Compound 11
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 5-methyl-7-(7-methyl-2-piperidin-4-yl-indazol-5-yl)furo[3,2-c]pyridin-4-one, Toll-like receptor 8, ...
Authors:Faller, M, Zink, F.
Deposit date:2020-01-15
Release date:2020-08-12
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.793 Å)
Cite:Target-Based Identification and Optimization of 5-Indazol-5-yl Pyridones as Toll-like Receptor 7 and 8 Antagonists Using a Biochemical TLR8 Antagonist Competition Assay.
J.Med.Chem., 63, 2020
6LKK
DownloadVisualize
BU of 6lkk by Molmil
Two-component system protein mediate signal transduction
Descriptor: 6-O-phosphono-alpha-D-glucopyranose, ABC transporter, solute-binding protein
Authors:Wang, M, Tao, Y.
Deposit date:2019-12-19
Release date:2020-12-02
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.502 Å)
Cite:Interface switch mediates signal transmission in a two-component system.
Proc.Natl.Acad.Sci.USA, 117, 2020
3ZQM
DownloadVisualize
BU of 3zqm by Molmil
Crystal structure of the small terminase oligomerization core domain from a SPP1-like bacteriophage (crystal form 1)
Descriptor: TERMINASE SMALL SUBUNIT
Authors:Buttner, C.R, Chechik, M, Ortiz-Lombardia, M, Smits, C, Chechik, V, Jeschke, G, Dykeman, E, Benini, S, Alonso, J.C, Antson, A.A.
Deposit date:2011-06-10
Release date:2011-12-28
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structural Basis for DNA Recognition and Loading Into a Viral Packaging Motor.
Proc.Natl.Acad.Sci.USA, 109, 2012
3CBF
DownloadVisualize
BU of 3cbf by Molmil
Crystal structure of LysN, alpha-aminoadipate aminotransferase, from Thermus thermophilus HB27
Descriptor: (2S)-2-[({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)amino]hexanedioic acid, Alpha-aminodipate aminotransferase
Authors:Tomita, T, Miyazaki, T, Miyagawa, T, Fushinobu, S, Kuzuyama, T, Nishiyama, M.
Deposit date:2008-02-21
Release date:2009-01-13
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.67 Å)
Cite:Mechanism for multiple-substrates recognition of alpha-aminoadipate aminotransferase from Thermus thermophilus
Proteins, 2008
4A4G
DownloadVisualize
BU of 4a4g by Molmil
Solution structure of SMN Tudor domain in complex with asymmetrically dimethylated arginine
Descriptor: NG,NG-DIMETHYL-L-ARGININE, SURVIVAL MOTOR NEURON PROTEIN
Authors:Tripsianes, K, Madl, T, Machyna, M, Fessas, D, Englbrecht, C, Fischer, U, Neugebauer, K.M, Sattler, M.
Deposit date:2011-10-12
Release date:2011-11-30
Last modified:2023-11-15
Method:SOLUTION NMR
Cite:Structural Basis for Dimethyl-Arginine Recognition by the Tudor Domains of Human Smn and Spf30 Proteins
Nat.Struct.Mol.Biol., 18, 2011
6LQN
DownloadVisualize
BU of 6lqn by Molmil
EBV tegument protein BBRF2
Descriptor: Cytoplasmic envelopment protein 1, NITRATE ION, SULFATE ION
Authors:He, H.P, Luo, M, Cao, Y.L, Gao, S.
Deposit date:2020-01-14
Release date:2020-10-07
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.600022 Å)
Cite:Structure of Epstein-Barr virus tegument protein complex BBRF2-BSRF1 reveals its potential role in viral envelopment.
Nat Commun, 11, 2020
4A45
DownloadVisualize
BU of 4a45 by Molmil
CpGH89CBM32-5, from Clostridium perfringens, in complex with GalNAc- beta-1,3-galactose
Descriptor: 2-acetamido-2-deoxy-beta-D-galactopyranose-(1-3)-beta-D-galactopyranose, ALPHA-N-ACETYLGLUCOSAMINIDASE FAMILY PROTEIN, CALCIUM ION, ...
Authors:Ficko-Blean, E, Stuart, C.P, Suits, M.D, Cid, M, Tessier, M, Woods, R.J, Boraston, A.B.
Deposit date:2011-10-06
Release date:2012-04-04
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Carbohydrate Recognition by an Architecturally Complex Alpha-N-Acetylglucosaminidase from Clostridium Perfringens.
Plos One, 7, 2012
7R81
DownloadVisualize
BU of 7r81 by Molmil
Structure of the translating Neurospora crassa ribosome arrested by cycloheximide
Descriptor: 18S rRNA, 26S rRNA, 4-{(2R)-2-[(1S,3S,5S)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione, ...
Authors:Shen, L, Su, Z, Yang, K, Wu, C, Becker, T, Bell-Pedersen, D, Zhang, J, Sachs, M.S.
Deposit date:2021-06-25
Release date:2021-12-01
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:Structure of the translating Neurospora ribosome arrested by cycloheximide
Proc.Natl.Acad.Sci.USA, 118, 2021
1HTX
DownloadVisualize
BU of 1htx by Molmil
SOLUTION STRUCTURE OF THE MAIN ALPHA-AMYLASE INHIBITOR FROM AMARANTH SEEDS
Descriptor: ALPHA-AMYLASE INHIBITOR AAI
Authors:Martins, J.C, Enassar, M, Willem, R, Wieruzeski, J.M, Lippens, G, Wodak, S.J.
Deposit date:2001-01-02
Release date:2001-07-18
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:Solution structure of the main alpha-amylase inhibitor from amaranth seeds.
Eur.J.Biochem., 268, 2001
7WU8
DownloadVisualize
BU of 7wu8 by Molmil
Crystal structure of Harmonin-homology domain 2 (HHD2) of human RTEL1
Descriptor: Regulator of telomere elongation helicase 1
Authors:Kumar, N, Rothweiler, U, Singh, M.
Deposit date:2022-02-07
Release date:2023-08-09
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.599 Å)
Cite:Harmonin homology domain-mediated interaction of RTEL1 helicase with RPA and DNA provides insights into its recruitment to DNA repair sites.
Nucleic Acids Res., 52, 2024
1HHX
DownloadVisualize
BU of 1hhx by Molmil
Solution structure of LNA3:RNA hybrid
Descriptor: 5- D(*CP*+TP*GP*AP*+TP*AP*+TP*GP*C) -3, 5- R(*GP*CP*AP*UP*AP*UP*CP*AP*G) -3
Authors:Petersen, M, Bondensgaard, K, Wengel, J, Jacobsen, J.P.
Deposit date:2000-12-29
Release date:2002-05-30
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Locked Nucleic Acid (Lna) Recognition of RNA: NMR Solution Structures of Lna:RNA Hybrids
J.Am.Chem.Soc., 124, 2002
6MCT
DownloadVisualize
BU of 6mct by Molmil
A designed pentameric membrane protein stabilized by van der Waals interaction
Descriptor: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE, SULFATE ION, mini-eVgL membrane protein
Authors:Mravic, M, Liu, L, Degrado, W.F.
Deposit date:2018-09-02
Release date:2019-04-03
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Packing of apolar side chains enables accurate design of highly stable membrane proteins.
Science, 363, 2019
2QEN
DownloadVisualize
BU of 2qen by Molmil
The walker-type atpase paby2304 of pyrococcus abyssi
Descriptor: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, WALKER-TYPE ATPASE
Authors:Uhring, M, Bey, G, Lecompte, O, Moras, D, Poch, O, Cavarelli, J.
Deposit date:2007-06-26
Release date:2008-07-01
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:The walker-type atpase paby2304 of pyrococcus abyssi
To be Published
6LKL
DownloadVisualize
BU of 6lkl by Molmil
Two-component system protein mediate signal transduction
Descriptor: ABC transporter, solute-binding protein, MALONIC ACID
Authors:Wang, M, Tao, Y.
Deposit date:2019-12-19
Release date:2020-12-02
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.213 Å)
Cite:Interface switch mediates signal transmission in a two-component system.
Proc.Natl.Acad.Sci.USA, 117, 2020
6LTO
DownloadVisualize
BU of 6lto by Molmil
cryo-EM structure of full length human Pannexin1
Descriptor: Pannexin-1
Authors:Mou, L.Q, Ke, M, Xiao, Q.J, Wu, J.P, Deng, D.
Deposit date:2020-01-23
Release date:2020-05-13
Last modified:2024-10-30
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Structural basis for gating mechanism of Pannexin 1 channel.
Cell Res., 30, 2020
6LKI
DownloadVisualize
BU of 6lki by Molmil
Two-component system protein mediate signal transduction
Descriptor: ABC transporter, solute-binding protein, MALONIC ACID, ...
Authors:Wang, M, Tao, Y.
Deposit date:2019-12-19
Release date:2020-12-02
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.781 Å)
Cite:Interface switch mediates signal transmission in a two-component system.
Proc.Natl.Acad.Sci.USA, 117, 2020
6LQO
DownloadVisualize
BU of 6lqo by Molmil
EBV tegument protein BBRF2/BSRF1 complex
Descriptor: ACETATE ION, Cytoplasmic envelopment protein 1, GLYCEROL, ...
Authors:He, H.P, Luo, M, Cao, Y.L, Gao, S.
Deposit date:2020-01-14
Release date:2020-10-07
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.0911262 Å)
Cite:Structure of Epstein-Barr virus tegument protein complex BBRF2-BSRF1 reveals its potential role in viral envelopment.
Nat Commun, 11, 2020
6UE6
DownloadVisualize
BU of 6ue6 by Molmil
PWWP1 domain of NSD2 in complex with MR837
Descriptor: 4-cyano-N-cyclopropyl-N-[(thiophen-2-yl)methyl]benzamide, Histone-lysine N-methyltransferase NSD2, UNKNOWN ATOM OR ION
Authors:Liu, Y, Tempel, W, De Freitas, R.F, Schapira, M, Brown, P.J, Bountra, C, Edwards, A.M, Arrowsmith, C.H, Min, J, Structural Genomics Consortium (SGC)
Deposit date:2019-09-20
Release date:2019-11-13
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Discovery of Small-Molecule Antagonists of the PWWP Domain of NSD2.
J.Med.Chem., 64, 2021
6EB2
DownloadVisualize
BU of 6eb2 by Molmil
HIV-1 Integrase Catalytic Core Domain Complexed with Allosteric Inhibitor (2S)-[1-(1-benzyl-1H-pyrazol-4-yl)-3-(3,4-dihydro-2H-1-benzopyran-6-yl)isoquinolin-4-yl](tert-butoxy)acetic acid
Descriptor: (2S)-[1-(1-benzyl-1H-pyrazol-4-yl)-3-(3,4-dihydro-2H-1-benzopyran-6-yl)isoquinolin-4-yl](tert-butoxy)acetic acid, Integrase
Authors:Lindenberger, J.J, Kobe, M, Kvaratskhelia, M.
Deposit date:2018-08-03
Release date:2019-03-06
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.493 Å)
Cite:An Isoquinoline Scaffold as a Novel Class of Allosteric HIV-1 Integrase Inhibitors.
ACS Med Chem Lett, 10, 2019
6LM1
DownloadVisualize
BU of 6lm1 by Molmil
The crystal structure of cyanorhodopsin (CyR) N4075R from cyanobacteria Tolypothrix sp. NIES-4075
Descriptor: DECANE, DODECANE, HEXADECANE, ...
Authors:Hosaka, T, Kimura-Someya, T, Shirouzu, M.
Deposit date:2019-12-24
Release date:2020-10-21
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:A unique clade of light-driven proton-pumping rhodopsins evolved in the cyanobacterial lineage.
Sci Rep, 10, 2020
6LQD
DownloadVisualize
BU of 6lqd by Molmil
Structure of Enterovirus 71 in complex with NLD-22
Descriptor: 1-(2-azanylpyridin-4-yl)-3-[5-[4-(5-methyl-1,2,4-oxadiazol-3-yl)phenoxy]pentyl]imidazolidin-2-one, Capsid protein VP1, Capsid protein VP2, ...
Authors:Zhang, M, Sun, Y, Wang, X, Guo, Y, Rao, Z.
Deposit date:2020-01-13
Release date:2020-03-11
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.264 Å)
Cite:Design, Synthesis, and Evaluation of Novel Enterovirus 71 Inhibitors as Therapeutic Drug Leads for the Treatment of Human Hand, Foot, and Mouth Disease.
J.Med.Chem., 63, 2020
6UFJ
DownloadVisualize
BU of 6ufj by Molmil
Pistol ribozyme product crystal structure
Descriptor: MAGNESIUM ION, RNA (5'-R(*UP*CP*CP*AP*G)-3'), RNA (5'-R(*UP*CP*UP*GP*CP*UP*CP*UP*CP*(23G))-3'), ...
Authors:Teplova, M, Falschlunger, C, Krasheninina, O, Patel, D.J, Micura, R.
Deposit date:2019-09-24
Release date:2019-12-18
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.645 Å)
Cite:Crucial Roles of Two Hydrated Mg2+Ions in Reaction Catalysis of the Pistol Ribozyme.
Angew.Chem.Int.Ed.Engl., 59, 2020

226707

数据于2024-10-30公开中

PDB statisticsPDBj update infoContact PDBjnumon