Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 51964 件

3RB5
DownloadVisualize
BU of 3rb5 by Molmil
Crystal structure of calcium binding domain CBD12 of CALX1.1
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, Na/Ca exchange protein, ...
著者Wu, M, Zheng, L.
登録日2011-03-28
公開日2011-11-02
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献Structural Basis of the Ca(2+) Inhibitory Mechanism of Drosophila Na(+)/Ca(2+) Exchanger CALX and Its Modification by Alternative Splicing.
Structure, 19, 2011
1IXX
DownloadVisualize
BU of 1ixx by Molmil
CRYSTAL STRUCTURE OF COAGULATION FACTORS IX/X-BINDING PROTEIN (IX/X-BP) FROM VENOM OF HABU SNAKE WITH A HETERODIMER OF C-TYPE LECTIN DOMAINS
分子名称: CALCIUM ION, COAGULATION FACTORS IX/X-BINDING PROTEIN
著者Mizuno, H, Fujimoto, Z, Koizumi, M, Kano, H.
登録日1997-05-01
公開日1998-05-06
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structure of coagulation factors IX/X-binding protein, a heterodimer of C-type lectin domains.
Nat.Struct.Biol., 4, 1997
3AUL
DownloadVisualize
BU of 3aul by Molmil
Crystal structure of wild-type Lys48-linked diubiquitin in an open conformation
分子名称: Polyubiquitin-C
著者Hirano, T, Olivier, S, Yagi, M, Takemoto, E, Hiromoto, T, Satoh, T, Mizushima, T, Kato, K.
登録日2011-02-09
公開日2011-09-07
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.39 Å)
主引用文献Conformational dynamics of wild-type Lys48-linked diubiquitin in solution
J.Biol.Chem., 286, 2011
4L7N
DownloadVisualize
BU of 4l7n by Molmil
Human artd3 (parp3) - catalytic domain in complex with inhibitor STO1542
分子名称: 3-(4-oxo-3,4-dihydroquinazolin-2-yl)-N-[(1S)-1-(4-sulfamoylphenyl)ethyl]propanamide, Poly [ADP-ribose] polymerase 3
著者Karlberg, T, Thorsell, A.G, Lindgren, A.E.G, Ekblad, T, Spjut, S, Andersson, C.D, Weigelt, J, Linusson, A, Elofsson, M, Schuler, H.
登録日2013-06-14
公開日2014-02-19
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Chemical Probes to Study ADP-Ribosylation: Synthesis and Biochemical Evaluation of Inhibitors of the Human ADP-Ribosyltransferase ARTD3/PARP3.
J.Med.Chem., 56, 2013
4N1J
DownloadVisualize
BU of 4n1j by Molmil
Crystal structures of NLRP14 pyrin domain reveal a conformational switch mechanism, regulating its molecular interactions
分子名称: GLYCEROL, NACHT, LRR and PYD domains-containing protein 14
著者Eibl, C, Hessenberger, M, Wenger, J, Brandstetter, H.
登録日2013-10-04
公開日2014-07-16
最終更新日2017-11-15
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Structures of the NLRP14 pyrin domain reveal a conformational switch mechanism regulating its molecular interactions.
Acta Crystallogr.,Sect.D, 70, 2014
6TTC
DownloadVisualize
BU of 6ttc by Molmil
Haddock model of NDM-1/myricetin complex
分子名称: 3,5,7-TRIHYDROXY-2-(3,4,5-TRIHYDROXYPHENYL)-4H-CHROMEN-4-ONE, Metallo beta lactamase NDM-1, ZINC ION
著者Riviere, G, Oueslati, S, Gayral, M, Crechet, J.B, Nhiri, N, Jacquet, E, Cintrat, J.C, Giraud, F, van Heijenoort, C, Lescop, E, Pethe, S, Iorga, B.I, Naas, T, Guittet, E, Morellet, N.
登録日2019-12-26
公開日2021-01-13
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献NMR Characterization of the Influence of Zinc(II) Ions on the Structural and Dynamic Behavior of the New Delhi Metallo-beta-Lactamase-1 and on the Binding with Flavonols as Inhibitors.
Acs Omega, 5, 2020
6E6M
DownloadVisualize
BU of 6e6m by Molmil
Crystal structure of human cellular retinol-binding protein 1 in complex with cannabidiorcin (CBDO)
分子名称: (1'R,2'R)-4,5'-dimethyl-2'-(prop-1-en-2-yl)-1',2',3',4'-tetrahydro[1,1'-biphenyl]-2,6-diol, Retinol-binding protein 1
著者Silvaroli, J.A, Horwitz, S, Banerjee, S, Kiser, P.D, Golczak, M.
登録日2018-07-25
公開日2019-02-13
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Abnormal Cannabidiol Modulates Vitamin A Metabolism by Acting as a Competitive Inhibitor of CRBP1.
Acs Chem.Biol., 14, 2019
1IZK
DownloadVisualize
BU of 1izk by Molmil
Thermoactinomyces vulgaris R-47 alpha-amylase 1 mutant enzyme w398v
分子名称: CALCIUM ION, amylase
著者Ohtaki, A, Iguchi, A, Mizuno, M, Tonozuka, T, Sakano, Y, Kamitori, S.
登録日2002-10-03
公開日2003-07-29
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Mutual conversion of substrate specificities of Thermoactinomyces vulgaris R-47 alpha-amylases TVAI and TVAII by site-directed mutagenesis
CARBOHYDR.RES., 338, 2003
1IPE
DownloadVisualize
BU of 1ipe by Molmil
TROPINONE REDUCTASE-II COMPLEXED WITH NADPH
分子名称: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, TROPINONE REDUCTASE-II
著者Yamashita, A, Endo, M, Higashi, T, Nakatsu, T, Yamada, Y, Oda, J, Kato, H, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2001-05-09
公開日2003-06-03
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Capturing Enzyme Structure Prior to Reaction Initiation: Tropinone Reductase-II-Substrate Complexes
BIOCHEMISTRY, 42, 2003
4N2B
DownloadVisualize
BU of 4n2b by Molmil
Crystal structure of Protein Arginine Deiminase 2 (10 mM Ca2+)
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, Protein-arginine deiminase type-2
著者Slade, D.J, Zhang, X, Fang, P, Dreyton, C.J, Zhang, Y, Gross, M.L, Guo, M, Coonrod, S.A, Thompson, P.R.
登録日2013-10-04
公開日2015-02-04
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (1.69 Å)
主引用文献Protein arginine deiminase 2 binds calcium in an ordered fashion: implications for inhibitor design.
Acs Chem.Biol., 10, 2015
1IQ7
DownloadVisualize
BU of 1iq7 by Molmil
Ovotransferrin, C-Terminal Lobe, Apo Form
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Ovotransferrin, SULFATE ION
著者Mizutani, K, Muralidhara, B.K, Yamashita, H, Tabata, S, Mikami, B, Hirose, M.
登録日2001-07-06
公開日2001-11-28
最終更新日2024-10-09
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Anion-mediated Fe3+ release mechanism in ovotransferrin C-lobe: a structurally identified SO4(2-) binding site and its implications for the kinetic pathway.
J.Biol.Chem., 276, 2001
6HXY
DownloadVisualize
BU of 6hxy by Molmil
Crystal structure of the head and coiled-coil domains of zebrafish CCDC61
分子名称: Coiled-coil domain-containing protein 61
著者Ochi, T, van Breugel, M.
登録日2018-10-18
公開日2020-04-29
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献CCDC61/VFL3 Is a Paralog of SAS6 and Promotes Ciliary Functions.
Structure, 28, 2020
1IQD
DownloadVisualize
BU of 1iqd by Molmil
Human Factor VIII C2 Domain complexed to human monoclonal BO2C11 Fab.
分子名称: HUMAN FACTOR VIII, HUMAN MONOCLONAL BO2C11 FAB HEAVY CHAIN, HUMAN MONOCLONAL BO2C11 FAB LIGHT CHAIN
著者Spiegel Jr, P.C, Jacquemin, M, Saint-Remy, J.M, Stoddard, B.L, Pratt, K.P.
登録日2001-07-21
公開日2001-08-15
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structure of a factor VIII C2 domain-immunoglobulin G4kappa Fab complex: identification of an inhibitory antibody epitope on the surface of factor VIII.
Blood, 98, 2001
6HY5
DownloadVisualize
BU of 6hy5 by Molmil
THE GLIC PENTAMERIC LIGAND-GATED ION CHANNEL MUTANT Q193C
分子名称: ACETATE ION, CHLORIDE ION, DIUNDECYL PHOSPHATIDYL CHOLINE, ...
著者Hu, H.D, Delarue, M.
登録日2018-10-19
公開日2018-12-19
最終更新日2024-05-15
実験手法X-RAY DIFFRACTION (2.58 Å)
主引用文献Electrostatics, proton sensor, and networks governing the gating transition in GLIC, a proton-gated pentameric ion channel.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
4IH2
DownloadVisualize
BU of 4ih2 by Molmil
Crystal structure of kirola (Act d 11) from crystal soaked with 2-aminopurine
分子名称: CHLORIDE ION, Kirola, UNKNOWN LIGAND
著者Chruszcz, M, Ciardiello, M.A, Giangrieco, I, Osinski, T, Minor, W.
登録日2012-12-18
公開日2013-09-04
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structural and bioinformatic analysis of the kiwifruit allergen Act d 11, a member of the family of ripening-related proteins.
Mol.Immunol., 56, 2013
6TQZ
DownloadVisualize
BU of 6tqz by Molmil
Crystal structure of ribonucleotide reductase NrdF L61G variant from Bacillus anthracis aerobically soaked with Fe(II) and Mn(II) ions
分子名称: FE (II) ION, MANGANESE (II) ION, Ribonucleoside-diphosphate reductase subunit beta, ...
著者Grave, K, Hogbom, M.
登録日2019-12-17
公開日2020-04-15
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.099335 Å)
主引用文献The Bacillus anthracis class Ib ribonucleotide reductase subunit NrdF intrinsically selects manganese over iron.
J.Biol.Inorg.Chem., 25, 2020
4IHP
DownloadVisualize
BU of 4ihp by Molmil
Crystal structure of TgCDPK1 with inhibitor bound
分子名称: 1-tert-butyl-3-(3-chlorophenoxy)-1H-pyrazolo[3,4-d]pyrimidin-4-amine, Calmodulin-domain protein kinase 1, UNKNOWN ATOM OR ION
著者El Bakkouri, M, Tempel, W, Crandall, I.E, Massad, T, Loppnau, P, Graslund, S, Bountra, C, Arrowsmith, C.H, Edwards, A.M, Kain, C.K, Shokat, K.M, Sibley, L.D, Hui, R, Structural Genomics Consortium (SGC)
登録日2012-12-19
公開日2014-01-15
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.27 Å)
主引用文献Crystal structure of TgCDPK1 with inhibitor bound
TO BE PUBLISHED
1IRU
DownloadVisualize
BU of 1iru by Molmil
Crystal Structure of the mammalian 20S proteasome at 2.75 A resolution
分子名称: 20S proteasome, MAGNESIUM ION
著者Unno, M, Mizushima, T, Morimoto, Y, Tomisugi, Y, Tanaka, K, Yasuoka, N, Tsukihara, T.
登録日2001-10-24
公開日2002-05-22
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.75 Å)
主引用文献The structure of the mammalian 20S proteasome at 2.75 A resolution.
Structure, 10, 2002
3ESC
DownloadVisualize
BU of 3esc by Molmil
cut-2a; NCN-Pt-Pincer-Cutinase Hybrid
分子名称: Cutinase 1, bromo(4-{3-[(R)-ethoxy(4-nitrophenoxy)phosphoryl]propyl}-2,6-bis[(methylsulfanyl-kappaS)methyl]phenyl-kappaC~1~)palladium(2+)
著者Rutten, L, Mannie, J.P.B.A, Lutz, M, Gros, P.
登録日2008-10-05
公開日2009-07-28
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.2 Å)
主引用文献Solid-state structural characterization of cutinase-ECE-pincer-metal hybrids
Chemistry, 15, 2009
6HYV
DownloadVisualize
BU of 6hyv by Molmil
THE GLIC PENTAMERIC LIGAND-GATED ION CHANNEL MUTANT Y119A
分子名称: ACETATE ION, CHLORIDE ION, DIUNDECYL PHOSPHATIDYL CHOLINE, ...
著者Hu, H.D, Delarue, M.
登録日2018-10-22
公開日2018-12-19
最終更新日2024-05-15
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Electrostatics, proton sensor, and networks governing the gating transition in GLIC, a proton-gated pentameric ion channel.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
6E2B
DownloadVisualize
BU of 6e2b by Molmil
Ubiquitin in complex with Pt(2-phenilpyridine)(PPh3)
分子名称: GLYCEROL, SULFATE ION, Ubiquitin, ...
著者Zhemkov, V.A, Kim, M.
登録日2018-07-11
公開日2018-11-14
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献Reactions of Cyclometalated Platinum(II) [Pt(N∧C)(PR3)Cl] Complexes with Imidazole and Imidazole-Containing Biomolecules: Fine-Tuning of Reactivity and Photophysical Properties via Ligand Design.
Inorg Chem, 58, 2019
6TPS
DownloadVisualize
BU of 6tps by Molmil
early intermediate RNA Polymerase I Pre-initiation complex - eiPIC
分子名称: DNA foreign, DNA-directed RNA polymerase I subunit RPA12, DNA-directed RNA polymerase I subunit RPA135, ...
著者Pilsl, M, Engel, C.
登録日2019-12-14
公開日2020-03-18
最終更新日2024-05-22
実験手法ELECTRON MICROSCOPY (3.54 Å)
主引用文献Structural basis of RNA polymerase I pre-initiation complex formation and promoter melting.
Nat Commun, 11, 2020
3ESA
DownloadVisualize
BU of 3esa by Molmil
cut-1b; NCN-Pt-Pincer-Cutinase Hybrid
分子名称: (2,6-bis[(dimethylamino-kappaN)methyl]-4-{3-[(S)-ethoxy(4-nitrophenoxy)phosphoryl]propyl}phenyl-kappaC~1~)(chloro)platinum(2+), Cutinase 1
著者Rutten, L, Mannie, J.P.B.A, Lutz, M, Gros, P.
登録日2008-10-05
公開日2009-07-28
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Solid-state structural characterization of cutinase-ECE-pincer-metal hybrids
Chemistry, 15, 2009
1IST
DownloadVisualize
BU of 1ist by Molmil
Crystal structure of yeast cyclophilin A, CPR1
分子名称: Cyclophilin A
著者Konno, M, Kashima, A, Yoshikawa-Fujioka, S.
登録日2001-12-25
公開日2003-11-18
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Turns are Essential in the Folding of the Globular Beta-Barrel Structure of Yeast Cyclophilin A, CPR1
To be Published
6TRH
DownloadVisualize
BU of 6trh by Molmil
Structure of E70A mutant of Rex8A from Paenibacillus barcinonensis complexed with 3(3)-alpha-L-arabinofuranosyl-xylotetraose.
分子名称: Reducing-end xylose-releasing exo-oligoxylanase Rex8A, alpha-L-arabinofuranose-(1-3)-[beta-D-xylopyranose-(1-4)]beta-D-xylopyranose-(1-4)-beta-D-xylopyranose-(1-4)-beta-D-xylopyranose
著者Jimenez-Ortega, E, Ramirez-Escudero, M, Sanz-Aparicio, J.
登録日2019-12-18
公開日2020-05-27
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.86 Å)
主引用文献Structural analysis of the reducing-end xylose-releasing exo-oligoxylanase Rex8A from Paenibacillus barcinonensis BP-23 deciphers its molecular specificity.
Febs J., 287, 2020

225946

件を2024-10-09に公開中

PDB statisticsPDBj update infoContact PDBjnumon