Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 51964 件

4OZJ
DownloadVisualize
BU of 4ozj by Molmil
GlnK2 from Haloferax mediterranei complexed with ADP
分子名称: ADENOSINE-5'-DIPHOSPHATE, Nitrogen regulatory protein P-II
著者Palanca, C, Pedro-Roig, L, Llacer, J.L, Camacho, M, Bonete, M.J, Rubio, V.
登録日2014-02-17
公開日2014-07-02
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献The structure of a PII signaling protein from a halophilic archaeon reveals novel traits and high-salt adaptations.
Febs J., 281, 2014
6ELV
DownloadVisualize
BU of 6elv by Molmil
Recombinantly expressed C-terminal domain of MdPPO1 (Csole-domain)
分子名称: CALCIUM ION, CHLORIDE ION, Polyphenol oxidase, ...
著者Kampatsikas, I, Bijelic, A, Pretzler, M, Rompel, A.
登録日2017-09-29
公開日2019-03-20
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (1.05 Å)
主引用文献A Peptide-Induced Self-Cleavage Reaction Initiates the Activation of Tyrosinase.
Angew.Chem.Int.Ed.Engl., 58, 2019
1J18
DownloadVisualize
BU of 1j18 by Molmil
Crystal Structure of a Beta-Amylase from Bacillus cereus var. mycoides Cocrystallized with Maltose
分子名称: ACETIC ACID, Beta-amylase, CALCIUM ION, ...
著者Miyake, H, Kurisu, G, Kusunoki, M, Nishimura, S, Kitamura, S, Nitta, Y.
登録日2002-12-02
公開日2003-05-27
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal Structure of a Catalytic Site Mutant of beta-Amylase from Bacillus cereus var. mycoides Cocrystallized with Maltopentaose
BIOCHEMISTRY, 42, 2003
6J50
DownloadVisualize
BU of 6j50 by Molmil
RNA polymerase II elongation complex bound with Spt4/5 and foreign DNA, stalled at SHL(-1) of the nucleosome (tilted conformation)
分子名称: DNA (198-MER), DNA (41-MER), DNA-directed RNA polymerase subunit, ...
著者Ehara, H, Kujirai, T, Fujino, Y, Shirouzu, M, Kurumizaka, H, Sekine, S.
登録日2019-01-10
公開日2019-02-20
最終更新日2024-03-27
実験手法ELECTRON MICROSCOPY (4.7 Å)
主引用文献Structural insight into nucleosome transcription by RNA polymerase II with elongation factors.
Science, 363, 2019
4OZQ
DownloadVisualize
BU of 4ozq by Molmil
Crystal structure of the mouse Kif14 motor domain
分子名称: 1,2-ETHANEDIOL, ADENOSINE-5'-DIPHOSPHATE, Chimera of Maltose-binding periplasmic protein and Kinesin family member 14 protein
著者Arora, K, Talje, L, Asenjo, A.B, Andersen, P, Atchia, K, Joshi, M, Sosa, H, Kwok, B.H, Allingham, J.S.
登録日2014-02-18
公開日2014-07-09
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.71 Å)
主引用文献KIF14 binds tightly to microtubules and adopts a rigor-like conformation.
J.Mol.Biol., 426, 2014
3PM8
DownloadVisualize
BU of 3pm8 by Molmil
CAD domain of PFF0520w, Calcium dependent protein kinase
分子名称: CALCIUM ION, CHLORIDE ION, Calcium-dependent protein kinase 2, ...
著者Wernimont, A.K, Hutchinson, A, Lew, J, Chamberlain, K, MacKenzie, F, Loppnau, P, Cossar, D, Crombet, L, Arrowsmith, C.H, Edwards, A.M, Bountra, C, Weigelt, J, Hui, R, Amani, M, Structural Genomics Consortium (SGC)
登録日2010-11-16
公開日2010-12-08
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献CAD domain of PFF0520w, Calcium dependent protein kinase
TO BE PUBLISHED
1J1L
DownloadVisualize
BU of 1j1l by Molmil
Crystal structure of human Pirin: a Bcl-3 and Nuclear factor I interacting protein and a cupin superfamily member
分子名称: FE (II) ION, Pirin
著者Pang, H, Bartlam, M, Zeng, Q, Gao, G.F, Rao, Z.
登録日2002-12-10
公開日2003-12-16
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Crystal structure of human pirin: an iron-binding nuclear protein and transcription cofactor
J.Biol.Chem., 279, 2004
1IN2
DownloadVisualize
BU of 1in2 by Molmil
Peptide Antagonist of IGFBP1, (i,i+7) Covalently Restrained Analog
分子名称: IGFBP-1 antagonist, PENTANE
著者Skelton, N.J, Chen, Y.M, Dubree, N, Quan, C, Jackson, D.Y, Cochran, A.G, Zobel, K, Deshayes, K, Baca, M, Pisabarro, M.T, Lowman, H.B.
登録日2001-05-11
公開日2001-05-30
最終更新日2011-07-13
実験手法SOLUTION NMR
主引用文献Structure-function analysis of a phage display-derived peptide that binds to insulin-like growth factor binding protein 1.
Biochemistry, 40, 2001
6J7R
DownloadVisualize
BU of 6j7r by Molmil
Crystal structure of toxin TglT (unusual type guanylyltransferase-like toxin, Rv1045) mutant S78A co-expressed with TakA from Mycobacterium tuberculosis
分子名称: MAGNESIUM ION, guanylyltransferase-like toxin
著者Yu, X, Gao, X, Zhu, K, Wojdyla, J.A, Wang, M, Cui, S.
登録日2019-01-18
公開日2020-05-13
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.299 Å)
主引用文献Characterization of a toxin-antitoxin system in Mycobacterium tuberculosis suggests neutralization by phosphorylation as the antitoxicity mechanism.
Commun Biol, 3, 2020
4OX7
DownloadVisualize
BU of 4ox7 by Molmil
Structure of Synechococcus elongatus PCC 7942 CcmK2
分子名称: Carbon dioxide-concentrating mechanism protein CcmK
著者Sutter, M, Kinney, J.N, Cai, F, Kerfeld, C.A.
登録日2014-02-04
公開日2014-08-27
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.1001 Å)
主引用文献Engineering Bacterial Microcompartment Shells: Chimeric Shell Proteins and Chimeric Carboxysome Shells.
Acs Synth Biol, 2014
3PM2
DownloadVisualize
BU of 3pm2 by Molmil
Crystal structure of a novel type of odorant binding protein from Anopheles gambiae belonging to the c+ class
分子名称: Odorant binding protein (AGAP007287-PA)
著者Spinelli, S, Lagarde, A, Qiao, H, Tegoni, M, Pelosi, P, Cambillau, C.
登録日2010-11-16
公開日2011-05-25
最終更新日2018-06-13
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal structure of a novel type of odorant-binding protein from Anopheles gambiae, belonging to the C-plus class.
Biochem.J., 437, 2011
6ELS
DownloadVisualize
BU of 6els by Molmil
Structure of latent apple tyrosinase (MdPPO1)
分子名称: COPPER (II) ION, OXYGEN ATOM, Polyphenol oxidase, ...
著者Kampatsikas, I, Bijelic, A, Pretzler, M, Rompel, A.
登録日2017-09-29
公開日2019-03-20
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (1.346 Å)
主引用文献A Peptide-Induced Self-Cleavage Reaction Initiates the Activation of Tyrosinase.
Angew.Chem.Int.Ed.Engl., 58, 2019
3ED8
DownloadVisualize
BU of 3ed8 by Molmil
Application of the superfolder YFP bimolecular fluorescence complementation for studying protein-protein interactions in vitro
分子名称: yellow fluorescence protein
著者Ottmann, C, Weyand, M.
登録日2008-09-02
公開日2009-01-20
最終更新日2022-12-21
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Applicability of superfolder YFP bimolecular fluorescence complementation in vitro.
Biol.Chem., 390, 2009
6S6Q
DownloadVisualize
BU of 6s6q by Molmil
Crystal structure of the LRR ectodomain of the plant membrane receptor kinase GASSHO1/SCHENGEN3 from Arabidopsis thaliana in complex with CASPARIAN STRIP INTEGRITY FACTOR 2.
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, LRR receptor-like serine/threonine-protein kinase GSO1, ...
著者Okuda, S, Moretti, A, Hothorn, M.
登録日2019-07-03
公開日2020-01-29
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.95 Å)
主引用文献Molecular mechanism for the recognition of sequence-divergent CIF peptides by the plant receptor kinases GSO1/SGN3 and GSO2.
Proc.Natl.Acad.Sci.USA, 117, 2020
6J8M
DownloadVisualize
BU of 6j8m by Molmil
Low-dose structure of bovine heart cytochrome c oxidase in the fully oxidized state determined using 30 keV X-ray
分子名称: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE, (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE, (7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE, ...
著者Ueno, G, Shimada, A, Yamashita, E, Hasegawa, K, Kumasaka, T, Shinzawa-Itoh, K, Yoshikawa, S, Tsukihara, T, Yamamoto, M.
登録日2019-01-20
公開日2019-06-26
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Low-dose X-ray structure analysis of cytochrome c oxidase utilizing high-energy X-rays.
J.Synchrotron Radiat., 26, 2019
6S5J
DownloadVisualize
BU of 6s5j by Molmil
Strictosidine Synthase from Ophiorrhiza pumila in complex with (S)-1-Ethyl-2,3,4,9-tetrahydro-1H-beta-carboline
分子名称: (1~{S})-1-ethyl-2,3,4,9-tetrahydro-1~{H}-pyrido[3,4-b]indole, Strictosidine synthase
著者Eger, E, Sharma, M, Kroutil, W, Grogan, G.
登録日2019-07-01
公開日2020-04-08
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.42 Å)
主引用文献Inverted Binding of Non-natural Substrates in Strictosidine Synthase Leads to a Switch of Stereochemical Outcome in Enzyme-Catalyzed Pictet-Spengler Reactions.
J.Am.Chem.Soc., 142, 2020
4OYS
DownloadVisualize
BU of 4oys by Molmil
CRYSTAL STRUCTURE OF VPS34 IN COMPLEX WITH SAR405.
分子名称: (8S)-9-[(5-chloranylpyridin-3-yl)methyl]-2-[(3R)-3-methylmorpholin-4-yl]-8-(trifluoromethyl)-6,7,8,9a-tetrahydro-3H-pyrimido[1,2-a]pyrimidin-4-one, Phosphatidylinositol 3-kinase catalytic subunit type 3, SULFATE ION
著者Mathieu, M, Marquette, J.p.
登録日2014-02-13
公開日2014-10-22
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献A highly potent and selective Vps34 inhibitor alters vesicle trafficking and autophagy.
Nat.Chem.Biol., 10, 2014
6JAP
DownloadVisualize
BU of 6jap by Molmil
Crystal structure of ABC transporter alpha-glycoside-binding mutant protein R356A in complex with sucrose
分子名称: 1,2-ETHANEDIOL, ABC transporter, periplasmic substrate-binding protein, ...
著者Kanaujia, S.P, Chandravanshi, M, Gogoi, P.
登録日2019-01-24
公開日2019-10-30
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.77 Å)
主引用文献Structural and thermodynamic correlation illuminates the selective transport mechanism of disaccharide alpha-glycosides through ABC transporter.
Febs J., 287, 2020
6S5Q
DownloadVisualize
BU of 6s5q by Molmil
Strictosidine Synthase from Ophiorrhiza pumila in complex with (S)-1-isobutyl-2,3,4,9-tetrahydro-1H-beta-carboline
分子名称: (1~{S})-1-(2-methylpropyl)-2,3,4,9-tetrahydro-1~{H}-pyrido[3,4-b]indole, Strictosidine synthase
著者Eger, E, Sharma, M, Kroutil, W, Grogan, G.
登録日2019-07-02
公開日2020-04-08
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.01 Å)
主引用文献Inverted Binding of Non-natural Substrates in Strictosidine Synthase Leads to a Switch of Stereochemical Outcome in Enzyme-Catalyzed Pictet-Spengler Reactions.
J.Am.Chem.Soc., 142, 2020
6IZ3
DownloadVisualize
BU of 6iz3 by Molmil
Structural basis for activity of TRIC counter-ion channels in calcium release
分子名称: Trimeric intracellular cation channel type B-B
著者Zeng, Y, Wang, X.H, Su, M, Chen, Y.H.
登録日2018-12-18
公開日2019-05-01
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (3.791 Å)
主引用文献Structural basis for activity of TRIC counter-ion channels in calcium release.
Proc.Natl.Acad.Sci.USA, 116, 2019
4IGY
DownloadVisualize
BU of 4igy by Molmil
Crystal structure of kirola (Act d 11) - triclinic form
分子名称: CHLORIDE ION, Kirola, UNKNOWN LIGAND
著者Chruszcz, M, Ciardiello, M.A, Giangrieco, I, Osinski, T, Minor, W.
登録日2012-12-18
公開日2013-09-04
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.92 Å)
主引用文献Structural and bioinformatic analysis of the kiwifruit allergen Act d 11, a member of the family of ripening-related proteins.
Mol.Immunol., 56, 2013
4EE9
DownloadVisualize
BU of 4ee9 by Molmil
Crystal structure of the RBcel1 endo-1,4-glucanase
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Endoglucanase
著者Delsaute, M, Berlemont, R, Van Elder, D, Galleni, M, Bauvois, C.
登録日2012-03-28
公開日2013-04-03
最終更新日2013-08-14
実験手法X-RAY DIFFRACTION (1.381 Å)
主引用文献Three-dimensional structure of RBcel1, a metagenome-derived psychrotolerant family GH5 endoglucanase.
Acta Crystallogr.,Sect.F, 69, 2013
6S5U
DownloadVisualize
BU of 6s5u by Molmil
Strictosidine Synthase from Ophiorrhiza pumila in complex with N-[2-(1H-Indol-3-yl)ethyl]-3-methyl-1-butanamine
分子名称: Strictosidine synthase, ~{N}-[2-(1~{H}-indol-3-yl)ethyl]-3-methyl-butan-1-amine
著者Eger, E, Sharma, M, Kroutil, W, Grogan, G.
登録日2019-07-02
公開日2020-04-08
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.03 Å)
主引用文献Inverted Binding of Non-natural Substrates in Strictosidine Synthase Leads to a Switch of Stereochemical Outcome in Enzyme-Catalyzed Pictet-Spengler Reactions.
J.Am.Chem.Soc., 142, 2020
1J4T
DownloadVisualize
BU of 1j4t by Molmil
Structure of Artocarpin: a Lectin with Mannose Specificity (Form 2)
分子名称: Artocarpin
著者Pratap, J.V, Jeyaprakash, A.A, Rani, P.G, Sekar, K, Surolia, A, Vijayan, M.
登録日2001-10-30
公開日2002-03-27
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Crystal structures of artocarpin, a Moraceae lectin with mannose specificity, and its complex with methyl-alpha-D-mannose: implications to the generation of carbohydrate specificity.
J.Mol.Biol., 317, 2002
3EF7
DownloadVisualize
BU of 3ef7 by Molmil
ZP-N domain of mammalian sperm receptor ZP3 (crystal form III)
分子名称: CALCIUM ION, Maltose-binding periplasmic protein, LINKER, ...
著者Monne, M, Jovine, L.
登録日2008-09-08
公開日2008-12-02
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献Crystal structure of the ZP-N domain of ZP3 reveals the core fold of animal egg coats
Nature, 456, 2008

225946

件を2024-10-09に公開中

PDB statisticsPDBj update infoContact PDBjnumon