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PDB: 52230 results

2RDL
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Hamster Chymase 2
Descriptor: Chymase 2, METHOXYSUCCINYL-ALA-ALA-PRO-ALA-CHLOROMETHYLKETONE INHIBITOR, SULFATE ION
Authors:Spurlino, J, Abad, M, Kervinen, J.
Deposit date:2007-09-24
Release date:2007-10-30
Last modified:2012-12-12
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural basis for elastolytic substrate specificity in rodent alpha-chymases.
J.Biol.Chem., 283, 2008
5W6S
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BU of 5w6s by Molmil
Crystal structure of Bacteriophage CBA120 tailspike protein 2 enzymatically active domain (TSP2dN, orf211) complex with Escherichia Coli O157-antigen
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, POTASSIUM ION, ...
Authors:Plattner, M, Shneider, M.M, Leiman, P.G.
Deposit date:2017-06-16
Release date:2018-10-24
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.263 Å)
Cite:Structure and Function of the Branched Receptor-Binding Complex of Bacteriophage CBA120.
J.Mol.Biol., 431, 2019
7RHC
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BU of 7rhc by Molmil
A new fluorescent protein darkmRuby at pH 9.0
Descriptor: 1,2-ETHANEDIOL, darkmRuby
Authors:Huang, M, Ng, H.L, Zhang, S, Deng, M, Chu, J.
Deposit date:2021-07-16
Release date:2022-07-27
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:A Long-range Interaction Affects Brightness and pH Stability of a Dark Fluorescent Protein
To Be Published
7RHD
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darkmRuby M94T/F96Y mutant at pH 7.5
Descriptor: 1,2-ETHANEDIOL, darkmRuby M94T/F96Y mutant
Authors:Huang, M, Ng, H.L, Zhang, S, Deng, M, Chu, J.
Deposit date:2021-07-16
Release date:2022-07-27
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:A Long-range Interaction Affects Brightness and pH Stability of a Dark Fluorescent Protein
To Be Published
6X8Z
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BU of 6x8z by Molmil
Crystal structure of N-truncated human B12 chaperone CblD(C262S)-thiolato-cob(III)alamin complex (108-296)
Descriptor: COBALAMIN, Methylmalonic aciduria and homocystinuria type D protein, mitochondrial
Authors:Mascarenhas, R, Li, Z, Koutmos, M, Banerjee, R.
Deposit date:2020-06-02
Release date:2020-09-16
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:An Interprotein Co-S Coordination Complex in the B 12 -Trafficking Pathway.
J.Am.Chem.Soc., 142, 2020
1HAK
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BU of 1hak by Molmil
CRYSTAL STRUCTURE OF RECOMBINANT HUMAN PLACENTAL ANNEXIN V COMPLEXED WITH K-201 AS A CALCIUM CHANNEL ACTIVITY INHIBITOR
Descriptor: 4-[3-{1-(4-BENZYL)PIPERODINYL}PROPIONYL]-7-METHOXY-2,3,4,5-TERTRAHYDRO-1,4-BENZOTHIAZEPINE, ANNEXIN V
Authors:Ago, H, Inagaki, E, Miyano, M.
Deposit date:1997-12-10
Release date:1999-02-16
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (3 Å)
Cite:Crystal structure of annexin V with its ligand K-201 as a calcium channel activity inhibitor.
J.Mol.Biol., 274, 1997
7R0T
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BU of 7r0t by Molmil
Crystal structure of exonuclease ExnV1
Descriptor: CHLORIDE ION, Exonuclease ExnV1, MAGNESIUM ION, ...
Authors:Welin, M, Svensson, A, Hakansson, M, Al-Karadaghi, S, Jasilionis, A, Linares-Pasten, J.A, Wang, L, Nordberg Karlsson, E, Ahlqvist, J.
Deposit date:2022-02-02
Release date:2022-11-02
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (2.194 Å)
Cite:Crystal structure of DNA polymerase I from Thermus phage G20c.
Acta Crystallogr D Struct Biol, 78, 2022
7R0K
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Crystal structure of Polymerase I from phage G20c
Descriptor: DNA polymerase I
Authors:Welin, M, Svensson, A, Hakansson, M, Al-Karadaghi, S, Linares-Pasten, J.A, Jasilionis, A, Nordberg Karlsson, E, Ahlqvist, J.
Deposit date:2022-02-02
Release date:2022-11-02
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.972 Å)
Cite:Crystal structure of DNA polymerase I from Thermus phage G20c.
Acta Crystallogr D Struct Biol, 78, 2022
6CP7
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BU of 6cp7 by Molmil
Monomer yeast ATP synthase Fo reconstituted in nanodisc generated from masked refinement.
Descriptor: ATP synthase protein 8, ATP synthase subunit 4, mitochondrial, ...
Authors:Srivastava, A.P, Luo, M, Symersky, J, Liao, M.F, Mueller, D.M.
Deposit date:2018-03-13
Release date:2018-04-11
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:High-resolution cryo-EM analysis of the yeast ATP synthase in a lipid membrane.
Science, 360, 2018
6GCA
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BU of 6gca by Molmil
Crystal structure of glutathione transferase Xi 3 from Trametes versicolor
Descriptor: Glutathione transferase Xi 3 from Trametes versicolor
Authors:Schwartz, M, Favier, F, Didierjean, C.
Deposit date:2018-04-17
Release date:2018-08-29
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.282 Å)
Cite:Trametes versicolor glutathione transferase Xi 3, a dual Cys-GST with catalytic specificities of both Xi and Omega classes.
FEBS Lett., 592, 2018
6SRX
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Structure of the arginase-2-inhibitory human antigen-binding fragment Fab C0021158
Descriptor: ACETATE ION, CHLORIDE ION, Fab C0021158 heavy chain (IgG1), ...
Authors:Burschowsky, D, Addyman, A, Fiedler, S, Groves, M, Haynes, S, Seewooruthun, C, Carr, M.
Deposit date:2019-09-06
Release date:2020-06-10
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural and functional characterization of C0021158, a high-affinity monoclonal antibody that inhibits Arginase 2 function via a novel non-competitive mechanism of action.
Mabs, 12
6Y39
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HapE-P88L mutant CCAAT-binding complex from Aspergillus nidulans with cycA DNA
Descriptor: CBFD_NFYB_HMF domain-containing protein, CHLORIDE ION, DNA (25 mer), ...
Authors:Groll, M, Huber, E.M.
Deposit date:2020-02-17
Release date:2020-05-27
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural basis of HapE P88L -linked antifungal triazole resistance in Aspergillus fumigatus .
Life Sci Alliance, 3, 2020
5DVH
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BU of 5dvh by Molmil
Structure of the Kunitz-type cysteine protease inhibitor PCPI-3 from potato
Descriptor: CHLORIDE ION, PCPI-3
Authors:Brynda, J, Mishra, M, Mares, M.
Deposit date:2015-09-21
Release date:2016-10-12
Last modified:2017-09-06
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure of the Kunitz-type cysteine protease inhibitor PCPI-3 from potato
To Be Published
5OJQ
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BU of 5ojq by Molmil
The modeled structure of of wild type extended type VI secretion system sheath/tube complex in vibrio cholerae based on cryo-EM reconstruction of the non-contractile sheath/tube complex
Descriptor: Haemolysin co-regulated protein, Type VI secretion protein, VipA
Authors:Wang, J, Brackmann, M, Castano-Diez, D, Kudryashev, M, Goldie, K, Maier, T, Stahlberg, H, Basler, M.
Deposit date:2017-07-22
Release date:2017-08-09
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Cryo-EM structure of the extended type VI secretion system sheath-tube complex.
Nat Microbiol, 2, 2017
2RNR
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BU of 2rnr by Molmil
Solution structure of the complex between TFIIE alpha C-terminal acidic domain and TFIIH p62 PH domain
Descriptor: TFIIH basal transcription factor complex p62 subunit, Transcription initiation factor IIE subunit alpha
Authors:Okuda, M, Nishimura, Y.
Deposit date:2008-01-31
Release date:2008-04-01
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Structural insight into the TFIIE-TFIIH interaction: TFIIE and p53 share the binding region on TFIIH
Embo J., 27, 2008
6XZO
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BU of 6xzo by Molmil
Crystal structure of human carbonic anhydrase I in complex with 4-(3-(2-((4-bromo-2-hydroxybenzyl)amino)ethyl)ureido) benzenesulfonamide
Descriptor: 1-[2-[(4-bromanyl-2-oxidanyl-phenyl)methylamino]ethyl]-3-(4-sulfamoylphenyl)urea, Carbonic anhydrase 1, ZINC ION
Authors:Zanotti, G, Majid, A, Bozdag, M, Angeli, A, Carta, F, Berto, P, Supuran, C.
Deposit date:2020-02-05
Release date:2020-09-23
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.44 Å)
Cite:Benzylaminoethyureido-Tailed Benzenesulfonamides: Design, Synthesis, Kinetic and X-ray Investigations on Human Carbonic Anhydrases.
Int J Mol Sci, 21, 2020
6SS6
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BU of 6ss6 by Molmil
Structure of arginase-2 in complex with the inhibitory human antigen-binding fragment Fab C0020187
Descriptor: Arginase-2, mitochondrial, Fab C0020187 heavy chain (IgG1), ...
Authors:Burschowsky, D, Addyman, A, Fiedler, S, Groves, M, Haynes, S, Seewooruthun, C, Carr, M.
Deposit date:2019-09-06
Release date:2020-06-10
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (3.25 Å)
Cite:Extensive sequence and structural evolution of Arginase 2 inhibitory antibodies enabled by an unbiased approach to affinity maturation.
Proc.Natl.Acad.Sci.USA, 117, 2020
2RQC
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BU of 2rqc by Molmil
Solution Structure of RNA-binding domain 3 of CUGBP1 in complex with RNA (UG)3
Descriptor: 5'-R(*UP*GP*UP*GP*UP*G)-3', CUG-BP- and ETR-3-like factor 1
Authors:Tsuda, K, Kuwasako, K, Takahashi, M, Someya, T, Muto, Y, Inoue, M, Kigawa, T, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2009-04-09
Release date:2009-08-04
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Structural basis for the sequence-specific RNA-recognition mechanism of human CUG-BP1 RRM3
Nucleic Acids Res., 37, 2009
2RRB
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BU of 2rrb by Molmil
Refinement of RNA binding domain in human Tra2 beta protein
Descriptor: cDNA FLJ40872 fis, clone TUTER2000283, highly similar to Homo sapiens transformer-2-beta (SFRS10) gene
Authors:Tsuda, K, Kuwasako, K, Takahashi, M, Someya, T, Inoue, M, Kigawa, T, Terada, T, Shirouzu, M, Sugano, S, Muto, Y, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2010-06-17
Release date:2011-04-27
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Structural basis for the dual RNA-recognition modes of human Tra2-beta RRM.
Nucleic Acids Res., 39, 2011
5W6F
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BU of 5w6f by Molmil
Crystal structure of Bacteriophage CBA120 tailspike protein 3 (TSP3, orf212)
Descriptor: CHLORIDE ION, tailspike protein 3
Authors:Plattner, M, Shneider, M.M, Leiman, P.G.
Deposit date:2017-06-16
Release date:2018-10-24
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.18 Å)
Cite:Structure and Function of the Branched Receptor-Binding Complex of Bacteriophage CBA120.
J.Mol.Biol., 431, 2019
7AQY
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BU of 7aqy by Molmil
Co-Crystal Structure of Variant Surface Glycoprotein VSG2 in complex with Nanobody VSG2(NB11)
Descriptor: Nanobody VSG2(NB11), Variant surface glycoprotein MITAT 1.2, beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Stebbins, C.E, Hempelmann, A, VanStraaten, M.
Deposit date:2020-10-23
Release date:2021-11-03
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Nanobody-mediated macromolecular crowding induces membrane fission and remodeling in the African trypanosome.
Cell Rep, 37, 2021
7AQZ
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BU of 7aqz by Molmil
Co-Crystal Structure of Variant Surface Glycoprotein VSG2 in complex with Nanobody VSG2(NB14)
Descriptor: CITRIC ACID, Nanobody VSG2(NB14), SODIUM ION, ...
Authors:Stebbins, C.E, Hempelmann, A, VanStraaten, M.
Deposit date:2020-10-23
Release date:2021-11-03
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Nanobody-mediated macromolecular crowding induces membrane fission and remodeling in the African trypanosome.
Cell Rep, 37, 2021
4IPS
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BU of 4ips by Molmil
Substrate and reaction specificity of Mycobacterium tuberculosis cytochrome P450 CYP121
Descriptor: (3S,6S)-3,6-bis(4-hydroxybenzyl)piperazin-2-one, Cytochrome P450 121, GLYCEROL, ...
Authors:Fonvielle, M, LeDu, M.H, Lequin, O, Lecoq, A, Jacquet, M, Thai, R, Dubois, S, Grach, G, Gondry, M, Belin, P.
Deposit date:2013-01-10
Release date:2013-05-01
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Substrate and Reaction Specificity of Mycobacterium tuberculosis Cytochrome P450 CYP121: INSIGHTS FROM BIOCHEMICAL STUDIES AND CRYSTAL STRUCTURES.
J.Biol.Chem., 288, 2013
1QB1
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Bovine Trypsin with 1-[2-[5-[amino(imino)methyl]-2-hydroxyphenoxy]-6-[3-(4,5-dihydro-1-methyl-1H-imidazol-2-yl)phenoxy]pyridin-4-yl]piperidine-3-carboxylic Acid (ZK-806974)
Descriptor: 1-[2-[5-[AMINO(IMINO)METHYL]-2-HYDROXYPHENOXY]-6-[3-(4,5-DIHYDRO-1-METHYL-1H-IMIDAZOL-2-YL)PHENOXY] PYRIDIN-4-YL]PIPERIDINE-3-CARBOXYLIC ACID, CALCIUM ION, PROTEIN (TRYPSIN)
Authors:Whitlow, M.
Deposit date:1999-04-28
Release date:2000-04-29
Last modified:2018-01-24
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystallographic analysis of potent and selective factor Xa inhibitors complexed to bovine trypsin.
Acta Crystallogr.,Sect.D, 55, 1999
6CCK
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BU of 6cck by Molmil
Crystal structure of E.coli Phosphopantetheine Adenylyltransferase (PPAT/CoaD) in complex with (R)-3-(3-chlorophenyl)-3-((5-methyl-7-oxo-4,7-dihydro-[1,2,4]triazolo[1,5-a]pyrimidin-2-yl)amino)propanenitrile
Descriptor: (3R)-3-(3-chlorophenyl)-3-[(5-methyl-7-oxo-6,7-dihydro[1,2,4]triazolo[1,5-a]pyrimidin-2-yl)amino]propanenitrile, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
Authors:Mamo, M, Appleton, B.A.
Deposit date:2018-02-07
Release date:2018-03-14
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.61 Å)
Cite:Fragment-Based Drug Discovery of Inhibitors of Phosphopantetheine Adenylyltransferase from Gram-Negative Bacteria.
J. Med. Chem., 61, 2018

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