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PDB: 51630 results

6Q4M
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Crystal structure of the O-GlcNAc transferase Asn648Tyr mutation
Descriptor: (2S,3R,4R,5S,6R)-3-(acetylamino)-4,5-dihydroxy-6-(hydroxymethyl)tetrahydro-2H-thiopyran-2-yl [(2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl dihydrogen diphosphate, PHOSPHATE ION, UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit
Authors:Gundogdu, M, van Aalten, D.M.F.
Deposit date:2018-12-06
Release date:2019-12-25
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of the O-GlcNAc transferase Asn648Tyr mutation
To Be Published
6Q56
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Crystal structure of the B. subtilis M1A22 tRNA methyltransferase TrmK
Descriptor: NICKEL (II) ION, tRNA (adenine(22)-N(1))-methyltransferase
Authors:Degut, C, Roovers, M, Barraud, P, Brachet, F, Feller, A, Larue, V, Al Refaii, A, Caillet, J, Droogmans, L, Tisne, C.
Deposit date:2018-12-07
Release date:2019-03-27
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural characterization of B. subtilis m1A22 tRNA methyltransferase TrmK: insights into tRNA recognition.
Nucleic Acids Res., 47, 2019
5ZRS
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Crystal structure of PET-degrading cutinase Cut190 S176A/S226P/R228S mutant in monoethyl adipate bound state
Descriptor: 6-ethoxy-6-oxohexanoic acid, Alpha/beta hydrolase family protein, CALCIUM ION, ...
Authors:Numoto, N, Kamiya, N, Bekker, G.J, Yamagami, Y, Inaba, S, Ishii, K, Uchiyama, S, Kawai, F, Ito, N, Oda, M.
Deposit date:2018-04-25
Release date:2018-09-12
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Structural Dynamics of the PET-Degrading Cutinase-like Enzyme from Saccharomonospora viridis AHK190 in Substrate-Bound States Elucidates the Ca2+-Driven Catalytic Cycle.
Biochemistry, 57, 2018
6Q6U
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BU of 6q6u by Molmil
Crystal structure of C39S mutant of thioredoxin h1 from Chlamydomonas reinhardtii
Descriptor: Thioredoxin H-type
Authors:Fermani, S, Zaffagnini, M, Lemaire, S.D.
Deposit date:2018-12-11
Release date:2019-01-16
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:Structural and Biochemical Insights into the Reactivity of Thioredoxin h1 fromChlamydomonas reinhardtii.
Antioxidants (Basel), 8, 2019
6Q6Z
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Structure of the plant immune signaling node EDS1 (enhanced disease susceptibility 1) in complex with nanobody ENB21
Descriptor: EDS1-SPECIFIC NANOBODY, Protein EDS1L
Authors:Niefind, K, Voss, M, Toelzer, C.
Deposit date:2018-12-12
Release date:2019-10-02
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (3.476 Å)
Cite:Arabidopsis immunity regulator EDS1 in a PAD4/SAG101-unbound form is a monomer with an inherently inactive conformation.
J.Struct.Biol., 208, 2019
6Q4R
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High-resolution crystal structure of ERAP1 with bound phosphinic transition-state analogue inhibitor
Descriptor: 1,2-ETHANEDIOL, 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Giastas, P, Neu, M, Rowland, P, Stratikos, E.
Deposit date:2018-12-06
Release date:2019-04-10
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:High-Resolution Crystal Structure of Endoplasmic Reticulum Aminopeptidase 1 with Bound Phosphinic Transition-State Analogue Inhibitor.
Acs Med.Chem.Lett., 10, 2019
6Q82
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Crystal structure of the biportin Pdr6 in complex with RanGTP
Descriptor: GTP-binding nuclear protein Ran, GUANOSINE-5'-TRIPHOSPHATE, Importin beta-like protein KAP122, ...
Authors:Aksu, M, Vera-Rodriguez, A, Trakhanov, S, Gorlich, D.
Deposit date:2018-12-14
Release date:2019-05-01
Last modified:2019-06-12
Method:X-RAY DIFFRACTION (2.994 Å)
Cite:Structural basis for the nuclear import and export functions of the biportin Pdr6/Kap122.
J.Cell Biol., 218, 2019
8QLH
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Crystal structure of the pneumococcal Substrate-binding protein AliC as a domain-swapped dimer
Descriptor: AliC
Authors:Alcorlo, M, Abdullah, M.R, Hammerschmidt, S, Hermoso, J.
Deposit date:2023-09-19
Release date:2024-05-22
Last modified:2024-07-03
Method:X-RAY DIFFRACTION (2.38 Å)
Cite:Molecular and structural basis of oligopeptide recognition by the Ami transporter system in pneumococci.
Plos Pathog., 20, 2024
8QLK
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Crystal structure of the pneumococcal Substrate-binding protein AliB in complex with Peptide 2
Descriptor: ALA-ILE-GLN-SER-GLU-LYS-ALA-ARG-LYS-HIS-ASN, Oligopeptide-binding protein AliB
Authors:Alcorlo, M, Abdullah, M.R, Hammerschmidt, S, Hermoso, J.
Deposit date:2023-09-20
Release date:2024-05-22
Last modified:2024-07-03
Method:X-RAY DIFFRACTION (2.29 Å)
Cite:Molecular and structural basis of oligopeptide recognition by the Ami transporter system in pneumococci.
Plos Pathog., 20, 2024
5ZT6
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Crystal structure of H255A mutant of phosphomannose isomerase from Salmonella typhimurium
Descriptor: 1,2-ETHANEDIOL, Mannose-6-phosphate isomerase
Authors:Bangera, M, Murthy, M.R.N.
Deposit date:2018-05-02
Release date:2019-05-01
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural and functional insights into phosphomannose isomerase: the role of zinc and catalytic residues.
Acta Crystallogr D Struct Biol, 75, 2019
8QQ5
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Structure of WT SpNox DH domain: a bacterial NADPH oxidase.
Descriptor: CHLORIDE ION, FLAVIN-ADENINE DINUCLEOTIDE, Oxidoreductase
Authors:Thepaut, M, Petit-Hartlein, I, Vermot, A, Humm, A.S, Dupeux, F, Marquez, J.A, Smith, S, Fieschi, F.
Deposit date:2023-10-03
Release date:2024-05-08
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:X-ray structure and enzymatic study of a bacterial NADPH oxidase highlight the activation mechanism of eukaryotic NOX.
Elife, 13, 2024
8QLJ
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Crystal structure of the pneumococcal Substrate-binding protein AliB in complex with an unknown peptide
Descriptor: ALA-ALA-ALA-ALA-ALA-ALA-ALA-ALA-ALA, Oligopeptide-binding protein AliB
Authors:Alcorlo, M, Abdullah, M.R, Hammerschmidt, S, Hermoso, J.
Deposit date:2023-09-20
Release date:2024-05-22
Last modified:2024-07-03
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Molecular and structural basis of oligopeptide recognition by the Ami transporter system in pneumococci.
Plos Pathog., 20, 2024
6Q6C
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Pore-modulating toxins exploit inherent slow inactivation to block K+ channels
Descriptor: 1,2-ETHANEDIOL, Kunitz-type conkunitzin-S1, NITRATE ION, ...
Authors:Karbat, I, Gueta, H, Fine, S, Szanto, T, Hamer-Rogotner, S, Dym, O, Frolow, F, Gordon, D, Panyi, G, Gurevitz, M, Reuveny, E.
Deposit date:2018-12-10
Release date:2019-08-21
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Pore-modulating toxins exploit inherent slow inactivation to block K+channels.
Proc.Natl.Acad.Sci.USA, 116, 2019
8QLC
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Crystal structure of the pneumococcal Substrate-binding protein AliD in open conformation
Descriptor: AliD, MAGNESIUM ION
Authors:Alcorlo, M, Abdullah, M.R, Hammerschmidt, S, Hermoso, J.
Deposit date:2023-09-19
Release date:2024-05-22
Last modified:2024-07-03
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Molecular and structural basis of oligopeptide recognition by the Ami transporter system in pneumococci.
Plos Pathog., 20, 2024
8QPJ
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FAD-independent Methylene-Tetrahydrofolate Reductase Mutant E9Q from Mycobacterium hassiacum
Descriptor: Methylenetetrahydrofolate reductase (NAD(P)H)
Authors:Gehl, M, Demmer, U, Ermler, U, Shima, S.
Deposit date:2023-10-02
Release date:2024-05-29
Last modified:2024-06-12
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Mutational and structural studies of ( beta alpha ) 8 -barrel fold methylene-tetrahydropterin reductases utilizing a common catalytic mechanism.
Protein Sci., 33, 2024
6QGA
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Crystal structure of Ideonella sakaiensis MHETase bound to the non-hydrolyzable ligand MHETA
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 4-(2-hydroxyethylcarbamoyl)benzoic acid, CALCIUM ION, ...
Authors:Palm, G.J, Reisky, L, Boettcher, D, Mueller, H, Michels, E.A.P, Walczak, C, Berndt, L, Weiss, M.S, Bornscheuer, U.T, Weber, G.
Deposit date:2019-01-10
Release date:2019-04-03
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure of the plastic-degrading Ideonella sakaiensis MHETase bound to a substrate.
Nat Commun, 10, 2019
8QLM
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Crystal structure of the pneumococcal Substrate-binding protein AliB in complex with Peptide 3
Descriptor: Oligopeptide-binding protein AliB, PRO-ILE-VAL-GLY-GLY-HIS-GLU-GLY-ALA-GLY-VAL
Authors:Alcorlo, M, Abdullah, M.R, Hammerschmidt, S, Hermoso, J.
Deposit date:2023-09-20
Release date:2024-05-22
Last modified:2024-07-03
Method:X-RAY DIFFRACTION (1.66 Å)
Cite:Molecular and structural basis of oligopeptide recognition by the Ami transporter system in pneumococci.
Plos Pathog., 20, 2024
8QPL
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F420-Dependent Methylene-Tetrahydromethanopterin Reductase with F420 from Methanocaldococcus jannaschii
Descriptor: 5,10-methylenetetrahydromethanopterin reductase, COENZYME F420
Authors:Gehl, M, Demmer, U, Ermler, U, Shima, S.
Deposit date:2023-10-02
Release date:2024-05-29
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Mutational and structural studies of ( beta alpha ) 8 -barrel fold methylene-tetrahydropterin reductases utilizing a common catalytic mechanism.
Protein Sci., 33, 2024
8QQ8
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Crystal Structure of F420-dependent Methylene-Tetrahydromethanopterin Reductase Mutant E6Q from Methanocaldococcus Jannaschii
Descriptor: 5,10-methylenetetrahydromethanopterin reductase
Authors:Gehl, M, Demmer, U, Ermler, U, Shima, S.
Deposit date:2023-10-04
Release date:2024-05-29
Method:X-RAY DIFFRACTION (2 Å)
Cite:Mutational and structural studies of ( beta alpha ) 8 -barrel fold methylene-tetrahydropterin reductases utilizing a common catalytic mechanism.
Protein Sci., 33, 2024
1AC9
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BU of 1ac9 by Molmil
SOLUTION STRUCTURE OF A DNA DECAMER CONTAINING THE ANTIVIRAL DRUG GANCICLOVIR: COMBINED USE OF NMR, RESTRAINED MOLECULAR DYNAMICS, AND FULL RELAXATION REFINEMENT, 6 STRUCTURES
Descriptor: DNA
Authors:Foti, M, Marshalko, S, Schurter, E, Kumar, S, Beardsley, G.P, Schweitzer, B.I.
Deposit date:1997-02-17
Release date:1997-07-07
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution structure of a DNA decamer containing the antiviral drug ganciclovir: combined use of NMR, restrained molecular dynamics, and full relaxation matrix refinement.
Biochemistry, 36, 1997
6QD4
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BU of 6qd4 by Molmil
MloK1 model from single particle analysis of 2D crystals, class 8 (intermediate conformation)
Descriptor: Cyclic nucleotide-gated potassium channel mll3241, POTASSIUM ION
Authors:Righetto, R, Biyani, N, Kowal, J, Chami, M, Stahlberg, H.
Deposit date:2018-12-31
Release date:2019-04-24
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (5.6 Å)
Cite:Retrieving high-resolution information from disordered 2D crystals by single-particle cryo-EM.
Nat Commun, 10, 2019
1A4P
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P11 (S100A10), LIGAND OF ANNEXIN II
Descriptor: S100A10
Authors:Rety, S, Sopkova, J, Renouard, M, Osterloh, D, Gerke, V, Russo-Marie, F, Lewit-Bentley, A.
Deposit date:1998-01-30
Release date:1998-05-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:The crystal structure of a complex of p11 with the annexin II N-terminal peptide.
Nat.Struct.Biol., 6, 1999
6QBP
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structure of the core domaine of Knr4, an intrinsically disordered protein from Saccharomyces cerevisiae - mutant S203D
Descriptor: Cell wall assembly regulator SMI1
Authors:Ramos, N, Batista, M, Francois, J.M, Mourey, L, Maveyraud, L, Zerbib, D.
Deposit date:2018-12-21
Release date:2020-01-29
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:structure of the core domaine of Knr4, an intrinsically disordered protein from Saccharomyces cerevisiae - mutant S203D
To Be Published
6QEN
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Crystal structure of Porcine Pancreatic Elastase (PPE) in complex with the 3-Oxo-beta-Sultam inhibitor LMC240
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 1-[[1-[(4-bromophenyl)methyl]-1,2,3-triazol-4-yl]methylamino]-2-methyl-1-oxidanylidene-propane-2-sulfonic acid, Chymotrypsin-like elastase family member 1, ...
Authors:Brito, J.A, Almeida, V.T, Carvalho, L.M, Moreira, R, Archer, M.
Deposit date:2019-01-08
Release date:2020-03-25
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.195 Å)
Cite:3-Oxo-beta-sultam as a Sulfonylating Chemotype for Inhibition of Serine Hydrolases and Activity-Based Protein Profiling.
Acs Chem.Biol., 15, 2020
6AAO
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Crystal structure of Methanosarcina mazei PylRS(Y306A/Y384F) complexed with TCO*Lys
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, DI(HYDROXYETHYL)ETHER, MAGNESIUM ION, ...
Authors:Yanagisawa, T, Kuratani, M, Yokoyama, S.
Deposit date:2018-07-18
Release date:2019-04-17
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.403 Å)
Cite:Structural Basis for Genetic-Code Expansion with Bulky Lysine Derivatives by an Engineered Pyrrolysyl-tRNA Synthetase.
Cell Chem Biol, 26, 2019

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