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PDB: 51787 results

3WKI
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Crystal structure of cellobiose 2-epimerase in complex with cellobiitol
Descriptor: CHLORIDE ION, Cellobiose 2-epimerase, PHOSPHATE ION, ...
Authors:Fujiwara, T, Saburi, W, Tanaka, I, Yao, M.
Deposit date:2013-10-21
Release date:2013-12-25
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.191 Å)
Cite:Structural Insights into the Epimerization of beta-1,4-Linked Oligosaccharides Catalyzed by Cellobiose 2-Epimerase, the Sole Enzyme Epimerizing Non-anomeric Hydroxyl Groups of Unmodified Sugars
J.Biol.Chem., 289, 2014
7ZUS
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BU of 7zus by Molmil
Crystal structure of ternary complex of Pol theta polymerase domain
Descriptor: 2'-3'-DIDEOXYGUANOSINE-5'-TRIPHOSPHATE, DNA (5'-D(*GP*CP*GP*GP*CP*TP*GP*TP*CP*AP*TP*TP*(DDG))-3'), DNA (5'-D(P*TP*TP*CP*CP*AP*AP*TP*GP*AP*CP*AP*GP*CP*CP*GP*C)-3'), ...
Authors:Krajewski, W.W, Turnbull, A.P, Willis, S, Charles, M, Stockley, M, Heald, R.A.
Deposit date:2022-05-13
Release date:2022-10-12
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.26 Å)
Cite:Discovery, Characterization, and Structure-Based Optimization of Small-Molecule In Vitro and In Vivo Probes for Human DNA Polymerase Theta.
J.Med.Chem., 65, 2022
3WL4
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BU of 3wl4 by Molmil
N,N'-diacetylchitobiose deacetylase (Se-derivative) from Pyrococcus furiosus
Descriptor: CADMIUM ION, CALCIUM ION, CHLORIDE ION, ...
Authors:Nakamura, T, Niiyama, M, Hashimoto, W, Uegaki, K.
Deposit date:2013-11-07
Release date:2014-05-07
Last modified:2014-08-20
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:Expression from engineered Escherichia coli chromosome and crystallographic study of archaeal N,N'-diacetylchitobiose deacetylase
Febs J., 281, 2014
2L2A
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BU of 2l2a by Molmil
Mutated Domain 11 of the Cytoplasmic region of the Cation-independent mannose-6-phosphate receptor
Descriptor: Insulin-like growth factor 2 receptor variant
Authors:Williams, C, Hoppe, H, Rezgui, D, Strickland, M, Frago, S, Ellis, R.Z, Wattana-Amorn, P, Prince, S.N, Zaccheo, O.J, Forbes, B, Jones, E.Y, Crump, M.P, Hassan, A.B.
Deposit date:2010-08-13
Release date:2012-02-15
Last modified:2012-12-12
Method:SOLUTION NMR
Cite:An exon splice enhancer primes IGF2:IGF2R binding site structure and function evolution.
Science, 338, 2012
2P3U
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Crystal structure of human factor XA complexed with 3-chloro-N-(4-chloro-2-{[(5-chloropyridin-2-yl)amino]carbonyl}-6-methoxyphenyl)-4-[(1-methyl-1H-imidazol-2-yl)methyl]thiophene-2-carboxamide {Pfizer 320663}
Descriptor: 3-CHLORO-N-(4-CHLORO-2-{[(5-CHLOROPYRIDIN-2-YL)AMINO]CARBONYL}-6-METHOXYPHENYL)-4-[(1-METHYL-1H-IMIDAZOL-2-YL)METHYL]THIOPHENE-2-CARBOXAMIDE, CALCIUM ION, Coagulation factor X
Authors:Adler, M, Whitlow, M.
Deposit date:2007-03-09
Release date:2007-09-11
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.62 Å)
Cite:

2L6N
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NMR solution structure of the protein YP_001092504.1
Descriptor: uncharacterized protein YP_001092504.1
Authors:Mohanty, B, Serrano, P, Geralt, M, Horst, R, Wuthrich, K, Joint Center for Structural Genomics (JCSG)
Deposit date:2010-11-23
Release date:2011-01-19
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:NMR solution structure of the protein YP_001092504.1
To be Published
3WN6
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BU of 3wn6 by Molmil
Crystal structure of alpha-amylase AmyI-1 from Oryza sativa
Descriptor: Alpha-amylase, CALCIUM ION, D(-)-TARTARIC ACID, ...
Authors:Ochiai, A, Sugai, H, Harada, K, Tanaka, S, Ishiyama, Y, Ito, K, Tanaka, T, Uchiumi, T, Taniguchi, M, Mitsui, T.
Deposit date:2013-12-05
Release date:2014-09-10
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.16 Å)
Cite:Crystal structure of alpha-amylase from Oryza sativa: molecular insights into enzyme activity and thermostability
Biosci.Biotechnol.Biochem., 78, 2014
1UG7
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Solution structure of four helical up-and-down bundle domain of the hypothetical protein 2610208M17Rik similar to the protein FLJ12806
Descriptor: 2610208M17Rik protein
Authors:Li, H, Kigawa, T, Tomizawa, T, Koshiba, S, Inoue, M, Shirouzu, M, Terada, M, Yabuki, T, Aoki, M, Seki, E, Matsuda, T, Hirota, H, Yoshida, M, Tanaka, A, Osanai, T, Arakawa, T, Carninci, P, Kawai, J, Hayashizaki, Y, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-06-13
Release date:2004-08-17
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Solution structure of four helical up-and-down bundle domain of the hypothetical protein 2610208M17Rik similar to the protein FLJ12806
To be Published
3WO8
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BU of 3wo8 by Molmil
Crystal structure of the beta-N-acetylglucosaminidase from Thermotoga maritima
Descriptor: Beta-N-acetylglucosaminidase
Authors:Mine, S, Kado, Y, Watanabe, M, Inoue, T, Ishikawa, K.
Deposit date:2013-12-20
Release date:2014-12-24
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.43 Å)
Cite:The structure of hyperthermophilic beta-N-acetylglucosaminidase reveals a novel dimer architecture associated with the active site.
Febs J., 281, 2014
4EFM
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BU of 4efm by Molmil
Crystal structure of H-Ras G12V in complex with GppNHp (state 1)
Descriptor: GTPase HRas, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
Authors:Muraoka, S, Shima, F, Araki, M, Inoue, T, Yoshimoto, A, Ijiri, Y, Seki, N, Tamura, A, Kumasaka, T, Yamamoto, M, Kataoka, T.
Deposit date:2012-03-30
Release date:2012-05-16
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structures of the state 1 conformations of the GTP-bound H-Ras protein and its oncogenic G12V and Q61L mutants
Febs Lett., 586, 2012
3WQP
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Crystal structure of Rubisco T289D mutant from Thermococcus kodakarensis
Descriptor: 1,2-ETHANEDIOL, 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE, MAGNESIUM ION, ...
Authors:Fujihashi, M, Nishitani, Y, Kiriyama, T, Miki, K.
Deposit date:2014-01-29
Release date:2015-02-04
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Mutation design of thermophilic Rubisco based on the three-dimensional structure enhances its activity at ambient temperature
to be published
2LHN
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BU of 2lhn by Molmil
RNA-binding zinc finger protein
Descriptor: Nuclear polyadenylated RNA-binding protein NAB2, ZINC ION
Authors:Brockmann, C, Neuhaus, D, Stewart, M.
Deposit date:2011-08-12
Release date:2012-06-27
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Structural Basis for Polyadenosine-RNA Binding by Nab2 Zn Fingers and Its Function in mRNA Nuclear Export.
Structure, 20, 2012
3WT3
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BU of 3wt3 by Molmil
New crystal form of a hyperthermophilic endocellulase
Descriptor: CALCIUM ION, Endoglucanase A, GLYCEROL
Authors:Kataoka, M, Ishikawa, K.
Deposit date:2014-04-07
Release date:2015-04-29
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.68 Å)
Cite:A new crystal form of a hyperthermophilic endocellulase
To be Published
2LFP
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BU of 2lfp by Molmil
Structure of bacteriophage SPP1 gp17 protein
Descriptor: Bacteriophage SPP1 complete nucleotide sequence
Authors:Chagot, B, Auzat, I, Gallopin, M, Petitpas, I, Gilquin, B, Tavares, P, Zinn-Justin, S.
Deposit date:2011-07-07
Release date:2011-09-28
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Solution structure of gp17 from the Siphoviridae bacteriophage SPP1: Insights into its role in virion assembly.
Proteins, 80, 2012
3WQH
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BU of 3wqh by Molmil
Crystal Structure of human DPP-IV in complex with Anagliptin
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Dipeptidyl peptidase 4, N-[2-({2-[(2S)-2-cyanopyrrolidin-1-yl]-2-oxoethyl}amino)-2-methylpropyl]-2-methylpyrazolo[1,5-a]pyrimidine-6-carboxamide
Authors:Watanabe, Y.S, Okada, S, Motoyama, T, Takahashi, R, Adachi, H, Oka, M.
Deposit date:2014-01-27
Release date:2015-07-15
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Anagliptin, a potent dipeptidyl peptidase IV inhibitor: its single-crystal structure and enzyme interactions.
J Enzyme Inhib Med Chem, 30, 2015
2LJQ
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BU of 2ljq by Molmil
(C9S, C14S)-leucocin A
Descriptor: Bacteriocin leucocin-A
Authors:Sit, C.S, Lohans, C.T, van Belkum, M.J, Campbell, C.D, Miskolzie, M, Vederas, J.C.
Deposit date:2011-09-22
Release date:2012-01-18
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Substitution of a Conserved Disulfide in the Type IIa Bacteriocin, Leucocin A, with L-Leucine and L-Serine Residues: Effects on Activity and Three-Dimensional Structure.
Chembiochem, 13, 2012
1LZ5
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BU of 1lz5 by Molmil
STRUCTURAL AND FUNCTIONAL ANALYSES OF THE ARG-GLY-ASP SEQUENCE INTRODUCED INTO HUMAN LYSOZYME
Descriptor: CHLORIDE ION, HUMAN LYSOZYME
Authors:Matsushima, M, Inaka, K, Yamada, T, Sekiguchi, K, Kikuchi, M.
Deposit date:1993-02-03
Release date:1993-10-31
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural and functional analyses of the Arg-Gly-Asp sequence introduced into human lysozyme.
J.Biol.Chem., 268, 1993
2LNL
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BU of 2lnl by Molmil
Structure of human CXCR1 in phospholipid bilayers
Descriptor: C-X-C chemokine receptor type 1
Authors:Park, S, Das, B.B, Casagrande, F, Nothnagel, H, Chu, M, Kiefer, H, Maier, K, De Angelis, A, Marassi, F.M, Opella, S.J.
Deposit date:2011-12-31
Release date:2012-10-17
Last modified:2016-04-27
Method:SOLID-STATE NMR
Cite:Structure of the chemokine receptor CXCR1 in phospholipid bilayers.
Nature, 491, 2012
2LOD
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BU of 2lod by Molmil
Solution-state structure of an intramolecular G-quadruplex with propeller, diagonal and edgewise loops
Descriptor: DNA (5'-D(*GP*GP*GP*AP*TP*GP*GP*GP*AP*CP*AP*CP*AP*GP*GP*GP*GP*AP*CP*GP*GP*G)-3')
Authors:Marusic, M, Sket, P, Bauer, L, Viglasky, V, Plavec, J.
Deposit date:2012-01-23
Release date:2012-05-30
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Solution-state structure of an intramolecular G-quadruplex with propeller, diagonal and edgewise loops.
Nucleic Acids Res., 40, 2012
2LMS
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BU of 2lms by Molmil
A single GalNAc residue on Threonine-106 modifies the dynamics and the structure of Interferon alpha-2a around the glycosylation site
Descriptor: 2-acetamido-2-deoxy-alpha-D-galactopyranose, Interferon alpha-2
Authors:Ghasriani, H, Belcourt, P.J.F, Sauve, S, Hodgson, D.J, Gingras, G, Brochu, D, Gilbert, M, Aubin, Y.
Deposit date:2011-12-12
Release date:2012-12-05
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:A single N-acetylgalactosamine residue at threonine 106 modifies the dynamics and structure of interferon alpha2a around the glycosylation site.
J.Biol.Chem., 288, 2013
3WBJ
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BU of 3wbj by Molmil
Crystal structure analysis of eukaryotic translation initiation factor 5B structure II
Descriptor: Eukaryotic translation initiation factor 5B
Authors:Zheng, A, Yamamoto, R, Ose, T, Yu, J, Tanaka, I, Yao, M.
Deposit date:2013-05-20
Release date:2014-11-19
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.495 Å)
Cite:X-ray structures of eIF5B and the eIF5B-eIF1A complex: the conformational flexibility of eIF5B is restricted on the ribosome by interaction with eIF1A
Acta Crystallogr.,Sect.D, 70, 2014
3WC2
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BU of 3wc2 by Molmil
Crystal structure of C. albicans tRNA(His) guanylyltransferase (Thg1) with a tRNA(Phe)(GUG)
Descriptor: 76mer-tRNA, Likely histidyl tRNA-specific guanylyltransferase
Authors:Nakamura, A, Nemoto, T, Sonoda, T, Yamashita, K, Tanaka, I, Yao, M.
Deposit date:2013-05-24
Release date:2013-12-18
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.641 Å)
Cite:Structural basis of reverse nucleotide polymerization
Proc.Natl.Acad.Sci.USA, 110, 2013
3WWR
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BU of 3wwr by Molmil
Crystal structure of the human vitamin D receptor ligand binding domain complexed with 1-((((1S,2R,6R,Z)-2,6-dihydroxy-4-((E)-2-((1R,3aS,7aR)-1-((R)-6-hydroxy-6-methylheptan-2-yl)-7a-methylhexahydro-1H-inden-4(2H)-ylidene)ethylidene)-3-methylenecyclohexyl)oxy)methyl)cyclopropanecarbonitrile
Descriptor: 1-({[(1R,2S,3R,5Z,7E,14beta,17alpha)-1,3,25-trihydroxy-9,10-secocholesta-5,7,10-trien-2-yl]oxy}methyl)cyclopropanecarbonitrile, Vitamin D3 receptor
Authors:Kakuda, S, Takimoto-Kamimura, M.
Deposit date:2014-06-27
Release date:2014-12-31
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.18 Å)
Cite:Synthesis and biological activities of vitamin D3 derivatives with cyanoalkyl side chain at C-2 position.
J.Steroid Biochem.Mol.Biol., 148, 2015
2L3N
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BU of 2l3n by Molmil
Solution structure of Rap1-Taz1 fusion protein
Descriptor: DNA-binding protein rap1,Telomere length regulator taz1
Authors:Zhou, Z.R, Wang, F, Chen, Y, Lei, M, Hu, H.
Deposit date:2010-09-19
Release date:2011-01-12
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:A conserved motif within RAP1 has diversified roles in telomere protection and regulation in different organisms.
Nat.Struct.Mol.Biol., 18, 2011
2L41
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Nab3 RRM - UCUU complex
Descriptor: RNA (5'-R(P*UP*CP*UP*U)-3'), RRM domain from Nuclear polyadenylated RNA-binding protein 3
Authors:Stefl, R, Pergoli, R, Hobor, F, Kubicek, K, Zimmermann, M, Pasulka, J, Hofr, C.
Deposit date:2010-09-28
Release date:2010-11-17
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Recognition of transcription termination signal by the nuclear polyadenylated RNA-binding (NAB) 3 protein
J.Biol.Chem., 286, 2011

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