Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 51689 results

2MJN
DownloadVisualize
BU of 2mjn by Molmil
Structure, dynamics and RNA binding of the multi-domain splicing factor TIA-1
Descriptor: Nucleolysin TIA-1 isoform p40
Authors:Sattler, M, Wang, I.
Deposit date:2014-01-13
Release date:2014-04-09
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structure, dynamics and RNA binding of the multi-domain splicing factor TIA-1.
Nucleic Acids Res., 42, 2014
6ALK
DownloadVisualize
BU of 6alk by Molmil
NMR solution structure of the major beech pollen allergen Fag s 1
Descriptor: Fag s 1 pollen allergen
Authors:Moraes, A.H, Asam, A, Almeida, F.C.L, Wallner, M, Ferreira, F, Valente, A.P.
Deposit date:2017-08-08
Release date:2018-08-08
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structural basis for cross-reactivity and conformation fluctuation of the major beech pollen allergen Fag s 1.
Sci Rep, 8, 2018
2MH3
DownloadVisualize
BU of 2mh3 by Molmil
NMR structure of the basic helix-loop-helix region of the transcriptional repressor HES-1
Descriptor: Transcription factor HES-1
Authors:Wienk, H, Popovic, M, Coglievina, M, Boelens, R, Pongor, S, Pintar, A.
Deposit date:2013-11-15
Release date:2014-02-05
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:The basic helix-loop-helix region of the transcriptional repressor hairy and enhancer of split 1 is preorganized to bind DNA.
Proteins, 82, 2014
6RWQ
DownloadVisualize
BU of 6rwq by Molmil
Engineered beta-lactoglobulin: variant F105L in complex with myristic acid
Descriptor: 1,2-ETHANEDIOL, Beta-lactoglobulin, MYRISTIC ACID
Authors:Loch, J.I, Gotkowski, M, Lewinski, K.
Deposit date:2019-06-05
Release date:2019-06-19
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structure-based design approach to rational site-directed mutagenesis of beta-lactoglobulin.
J.Struct.Biol., 210, 2020
6RWR
DownloadVisualize
BU of 6rwr by Molmil
Engineered beta-lactoglobulin: variant M107L in complex with myristic acid
Descriptor: Beta-lactoglobulin, MYRISTIC ACID
Authors:Loch, J.I, Gotkowski, M, Lewinski, K.
Deposit date:2019-06-05
Release date:2019-06-19
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure-based design approach to rational site-directed mutagenesis of beta-lactoglobulin.
J.Struct.Biol., 210, 2020
6AWW
DownloadVisualize
BU of 6aww by Molmil
Structure of PR 10 Allergen Ara h 8.01 in complex with 3-Hydroxy-2-naphthoic acid
Descriptor: 3-hydroxynaphthalene-2-carboxylic acid, Ara h 8 allergen, SODIUM ION
Authors:Offermann, L.R, Yarbrough, J, McBride, J, Hurlburt, B.K, Maleki, S.J, Pote, S.S, Chruszcz, M.
Deposit date:2017-09-06
Release date:2018-09-12
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure of PR-10 Allergen Ara h 8.01.
To Be Published
5SF8
DownloadVisualize
BU of 5sf8 by Molmil
Crystal Structure of human phosphodiesterase 10 in complex with 4-(azetidine-1-carbonyl)-2-methyl-N-[2-(5-phenyl-2-pyridin-2-yl-1,2,4-triazol-3-yl)ethyl]pyrazole-3-carboxamide
Descriptor: 4-(azetidine-1-carbonyl)-1-methyl-N-{2-[3-phenyl-1-(pyridin-2-yl)-1H-1,2,4-triazol-5-yl]ethyl}-1H-pyrazole-5-carboxamide, MAGNESIUM ION, ZINC ION, ...
Authors:Joseph, C, Koerner, M, Benz, J, Schlatter, D, Rudolph, M.G.
Deposit date:2022-01-21
Release date:2022-10-12
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:A high quality, industrial data set for binding affinity prediction: performance comparison in different early drug discovery scenarios.
J.Comput.Aided Mol.Des., 36, 2022
1WCC
DownloadVisualize
BU of 1wcc by Molmil
Screening for fragment binding by X-ray crystallography
Descriptor: 2-AMINO-6-CHLOROPYRAZINE, CELL DIVISION PROTEIN KINASE 2
Authors:Cleasby, A, O'Reilly, M, Hartshorn, M.J, Murray, C.W, Tickle, I.J, Jhoti, H, Frederickson, M.
Deposit date:2004-11-12
Release date:2005-01-27
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Fragment-Based Lead Discovery Using X-Ray Crystallography
J.Med.Chem., 48, 2005
1J0T
DownloadVisualize
BU of 1j0t by Molmil
The solution structure of molt-inhibiting hormone from the kuruma prawn
Descriptor: MOLT-INHIBITING HORMONE
Authors:Katayama, H, Nagata, K, Ohira, T, Yumoto, F, Tanokura, M, Nagasawa, H.
Deposit date:2002-11-22
Release date:2002-12-11
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:The solution structure of molt-inhibiting hormone from the Kuruma prawn Marsupenaeus japonicus
J.Biol.Chem., 278, 2003
2M3Y
DownloadVisualize
BU of 2m3y by Molmil
DNA containing a cluster of 8-oxo-guanine and abasic site lesion: beta anomer
Descriptor: DNA (5'-D(*CP*GP*CP*TP*CP*(AAB)P*CP*AP*CP*GP*C)-3'), DNA (5'-D(*GP*CP*GP*TP*GP*GP*GP*AP*(8OG)P*CP*G)-3')
Authors:Zalesak, J, Jourdan, M, Constant, J, Lourdin, M.
Deposit date:2013-01-28
Release date:2014-01-08
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structure and dynamics of DNA duplexes containing a cluster of mutagenic 8-oxoguanine and abasic site lesions.
J.Mol.Biol., 426, 2014
2RKW
DownloadVisualize
BU of 2rkw by Molmil
Intermediate position of ATP on its trail to the binding pocket inside the subunit B mutant R416W of the energy converter A1Ao ATP synthase
Descriptor: V-type ATP synthase beta chain
Authors:Kumar, A, Manimekalai, M.S.S, Balakrishna, A.M, Hunke, C, Gruber, G.
Deposit date:2007-10-18
Release date:2008-09-09
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.81 Å)
Cite:Spectroscopic and crystallographic studies of the mutant R416W give insight into the nucleotide binding traits of subunit B of the A1Ao ATP synthase
Proteins, 75, 2009
6AVY
DownloadVisualize
BU of 6avy by Molmil
Crystal structure of Zea mays acyl-protein thioesterase 2
Descriptor: Acyl-protein thioesterase 2
Authors:Burger, M, Willige, B.C, Chory, J.
Deposit date:2017-09-04
Release date:2017-12-27
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.24 Å)
Cite:A hydrophobic anchor mechanism defines a deacetylase family that suppresses host response against YopJ effectors.
Nat Commun, 8, 2017
6AVV
DownloadVisualize
BU of 6avv by Molmil
Crystal structure of Arabidopsis thaliana SOBER1
Descriptor: Carboxylesterase SOBER1
Authors:Burger, M, Willige, B.C, Chory, J.
Deposit date:2017-09-04
Release date:2017-12-27
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.51003063 Å)
Cite:A hydrophobic anchor mechanism defines a deacetylase family that suppresses host response against YopJ effectors.
Nat Commun, 8, 2017
2MGY
DownloadVisualize
BU of 2mgy by Molmil
Solution structure of the mitochondrial translocator protein (TSPO) in complex with its high-affinity ligand PK11195
Descriptor: N-[(2R)-butan-2-yl]-1-(2-chlorophenyl)-N-methylisoquinoline-3-carboxamide, Translocator protein
Authors:Jaremko, M, Jaremko, L, Giller, K, Becker, S, Zweckstetter, M.
Deposit date:2013-11-11
Release date:2014-04-02
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structure of the mitochondrial translocator protein in complex with a diagnostic ligand.
Science, 343, 2014
5AD3
DownloadVisualize
BU of 5ad3 by Molmil
Bivalent binding to BET bromodomains
Descriptor: 3-methoxy-N-[2-[4-[1-(3-methoxy-[1,2,4]triazolo[4,3-b]pyridazin-6-yl)-4-piperidyl]phenoxy]ethyl]-N-methyl-[1,2,4]triazolo[4,3-b]pyridazin-6-amine, BROMODOMAIN-CONTAINING PROTEIN 4
Authors:Waring, M.J, Chen, H, Rabow, A.A, Walker, G, Bobby, R, Boiko, S, Bradbury, R.H, Callis, R, Dale, I, Daniels, D, Flavell, L, Holdgate, G, Jowitt, T.A, Kikhney, A, McAlister, M, Ogg, D, Patel, J, Petteruti, P, Robb, G.R, Robers, M, Stratton, N, Svergun, D.I, Wang, W, Whittaker, D.
Deposit date:2015-08-19
Release date:2016-09-28
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.49 Å)
Cite:Potent and Selective Bivalent Inhibitors of Bet Bromodomains
Nat.Chem.Biol., 12, 2016
6ANE
DownloadVisualize
BU of 6ane by Molmil
Crystal Structure of Ideonella sakaiensis PET Hydrolase
Descriptor: MAGNESIUM ION, Poly(ethylene terephthalate) hydrolase
Authors:Galaz-Davison, P, Sotomayor, M, Parra, L.P, Ramirez-Sarmiento, C.A.
Deposit date:2017-08-12
Release date:2018-04-18
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.02 Å)
Cite:Active Site Flexibility as a Hallmark for Efficient PET Degradation by I. sakaiensis PETase.
Biophys. J., 114, 2018
1WMP
DownloadVisualize
BU of 1wmp by Molmil
Crystal structure of amine oxidase complexed with cobalt ion
Descriptor: COBALT (II) ION, Phenylethylamine oxidase
Authors:Okajima, T, Kishishita, S, Chiu, Y.C, Murakawa, T, Kim, M, Yamaguchi, H, Hirota, S, Kuroda, S, Tanizawa, K.
Deposit date:2004-07-13
Release date:2005-08-02
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Reinvestigation of metal ion specificity for quinone cofactor biogenesis in bacterial copper amine oxidase
Biochemistry, 44, 2005
2M3X
DownloadVisualize
BU of 2m3x by Molmil
Solution structure of Ph1500: a homohexameric protein centered on a 12-bladed beta-propeller
Descriptor: PH1500
Authors:Varnay, I, Truffault, V, Kessler, H, Coles, M.
Deposit date:2013-01-28
Release date:2014-01-29
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Solution structure of Ph1500: a homohexameric protein centered on a 12-bladed beta-propeller
To be Published
1WTB
DownloadVisualize
BU of 1wtb by Molmil
Complex structure of the C-terminal RNA-binding domain of hnRNP D (AUF1) with telomere DNA
Descriptor: 5'-D(P*TP*AP*GP*G)-3', Heterogeneous nuclear ribonucleoprotein D0
Authors:Enokizono, Y, Konishi, Y, Nagata, K, Ouhashi, K, Uesugi, S, Ishikawa, F, Katahira, M.
Deposit date:2004-11-22
Release date:2005-04-05
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Structure of hnRNP D complexed with single-stranded telomere DNA and unfolding of the quadruplex by heterogeneous nuclear ribonucleoprotein D
J.Biol.Chem., 280, 2005
2MK4
DownloadVisualize
BU of 2mk4 by Molmil
Solution structure of ORF2
Descriptor: Open reading frame 2
Authors:Miyakawa, T, Kobayashi, H, Tashiro, M, Yamanaka, H, Tanokura, M.
Deposit date:2014-01-24
Release date:2015-03-25
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structural Basis for Action of the External Chaperone for a Propeptide-deficient Serine Protease from Aeromonas sobria.
J.Biol.Chem., 290, 2015
5EYR
DownloadVisualize
BU of 5eyr by Molmil
Structure of Transcriptional Regulatory Repressor Protein - EthR from Mycobacterium Tuberculosis in complex with compound 5 at 1.57A resolution
Descriptor: 3-[1-[4-(methylaminomethyl)phenyl]piperidin-4-yl]-1-pyrrolidin-1-yl-propan-1-one, EthR
Authors:Surade, S, Blaszczyk, M, Nikiforov, P.O, Abell, C, Blundell, T.L.
Deposit date:2015-11-25
Release date:2016-02-03
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.57 Å)
Cite:A fragment merging approach towards the development of small molecule inhibitors of Mycobacterium tuberculosis EthR for use as ethionamide boosters.
Org.Biomol.Chem., 14, 2016
1IVB
DownloadVisualize
BU of 1ivb by Molmil
STRUCTURES OF AROMATIC INHIBITORS OF INFLUENZA VIRUS NEURAMINIDASE
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 4-(ACETYLAMINO)-3-HYDROXY-5-NITROBENZOIC ACID, CALCIUM ION, ...
Authors:Jedrzejas, M.J, Luo, M.
Deposit date:1994-12-12
Release date:1995-03-31
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structures of aromatic inhibitors of influenza virus neuraminidase.
Biochemistry, 34, 1995
2M1W
DownloadVisualize
BU of 2m1w by Molmil
TICAM-2 TIR domain
Descriptor: TIR domain-containing adapter molecule 2
Authors:Enokizono, Y, Kumeta, H, Funami, K, Horiuchi, M, Sarmiento, J, Yamashita, K, Standley, D.M, Matsumoto, M, Seya, T, Inagaki, F.
Deposit date:2012-12-07
Release date:2014-01-15
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structures and interface mapping of the TIR domain-containing adaptor molecules involved in interferon signaling.
Proc.Natl.Acad.Sci.USA, 110, 2013
6EB2
DownloadVisualize
BU of 6eb2 by Molmil
HIV-1 Integrase Catalytic Core Domain Complexed with Allosteric Inhibitor (2S)-[1-(1-benzyl-1H-pyrazol-4-yl)-3-(3,4-dihydro-2H-1-benzopyran-6-yl)isoquinolin-4-yl](tert-butoxy)acetic acid
Descriptor: (2S)-[1-(1-benzyl-1H-pyrazol-4-yl)-3-(3,4-dihydro-2H-1-benzopyran-6-yl)isoquinolin-4-yl](tert-butoxy)acetic acid, Integrase
Authors:Lindenberger, J.J, Kobe, M, Kvaratskhelia, M.
Deposit date:2018-08-03
Release date:2019-03-06
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.493 Å)
Cite:An Isoquinoline Scaffold as a Novel Class of Allosteric HIV-1 Integrase Inhibitors.
ACS Med Chem Lett, 10, 2019
2M50
DownloadVisualize
BU of 2m50 by Molmil
Analysis of the structural and molecular basis of voltage-sensitive sodium channel inhibition by the spider toxin, Huwentoxin-IV (-TRTX-Hh2a).
Descriptor: Mu-theraphotoxin-Hh2a
Authors:Gibbs, A, Minassian, N, Flinspach, M, Wickenden, A.
Deposit date:2013-02-12
Release date:2013-06-19
Last modified:2023-11-29
Method:SOLUTION NMR
Cite:Analysis of the Structural and Molecular Basis of Voltage-sensitive Sodium Channel Inhibition by the Spider Toxin Huwentoxin-IV ( mu-TRTX-Hh2a).
J.Biol.Chem., 288, 2013

224572

PDB entries from 2024-09-04

PDB statisticsPDBj update infoContact PDBjnumon