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PDB: 1127 results

1JCC
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Crystal Structure of a Novel Alanine-Zipper Trimer at 1.7 A Resolution, V13A,L16A,V20A,L23A,V27A,M30A,V34A mutations
Descriptor: MAJOR OUTER MEMBRANE LIPOPROTEIN, ZINC ION
Authors:Liu, J, Dai, J, Lu, M.
Deposit date:2001-06-08
Release date:2003-06-17
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Zinc-Mediated Helix Capping in A Triple-Helical Protein
Biochemistry, 42, 2003
1JPX
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Mutation that destabilize the gp41 core: determinants for stabilizing the SIV/CPmac envelope glycoprotein complex. Wild type.
Descriptor: gp41 envelope protein
Authors:Liu, J, Wang, S, LaBranche, C.C, Hoxie, J.A, Lu, M.
Deposit date:2001-08-03
Release date:2002-04-24
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Mutations that destabilize the gp41 core are determinants for stabilizing the simian immunodeficiency virus-CPmac envelope glycoprotein complex.
J.Biol.Chem., 277, 2002
4U1Q
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BU of 4u1q by Molmil
Crystal structure of S-adenosylmethionine-dependent methyltransferase SibL in complex with 3HK and SAH
Descriptor: (2S)-2-amino-4-(2-amino-3-hydroxyphenyl)-4-oxobutanoic acid, S-ADENOSYL-L-HOMOCYSTEINE, SibL
Authors:liu, J.S, Chen, S.C, Yang, C.S, Huang, C.H, Chen, Y.
Deposit date:2014-07-16
Release date:2015-08-05
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.085 Å)
Cite:Crystal structure of S-adenosylmethionine-dependent methyltransferase SibL in complex with 3HK and SAH
To Be Published
3I6L
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Newly identified epitope N1 derived from SARS-CoV N protein complexed with HLA-A*2402
Descriptor: Beta-2-microglobulin, HLA class I histocompatibility antigen, A-24 alpha chain, ...
Authors:Liu, J.W.
Deposit date:2009-07-07
Release date:2010-07-14
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Novel immunodominant peptide presentation strategy: a featured HLA-A*2402-restricted cytotoxic T-lymphocyte epitope stabilized by intrachain hydrogen bonds from severe acute respiratory syndrome coronavirus nucleocapsid protein
J.Virol., 84, 2010
1JCD
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BU of 1jcd by Molmil
Crystal Structure of a Novel Alanine-Zipper Trimer at 1.3 A Resolution, I6A,L9A,V13A,L16A,V20A,L23A,V27A,M30A,V34A,L48A,M51A mutations
Descriptor: MAJOR OUTER MEMBRANE LIPOPROTEIN
Authors:Liu, J, Lu, M.
Deposit date:2001-06-08
Release date:2003-06-17
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:An Alanine-Zipper Structure Determined by Long Range Intermolecular Interactions
J.Biol.Chem., 277, 2002
1I5X
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HIV-1 GP41 CORE
Descriptor: SULFATE ION, TRANSMEMBRANE GLYCOPROTEIN (GP41)
Authors:Liu, J, Lu, M.
Deposit date:2001-03-01
Release date:2002-09-10
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural and functional analysis of interhelical interactions in the human immunodeficiency virus type 1 gp41 envelope glycoprotein by alanine-scanning mutagenesis.
J.Virol., 75, 2001
1KFN
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BU of 1kfn by Molmil
Core side-chain packing and backbone conformation in Lpp-56 coiled-coil mutants
Descriptor: MAJOR OUTER MEMBRANE LIPOPROTEIN
Authors:Liu, J, Cao, W, Lu, M.
Deposit date:2001-11-21
Release date:2002-06-28
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Core side-chain packing and backbone conformation in Lpp-56 coiled-coil mutants.
J.Mol.Biol., 318, 2002
1JQ0
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Mutation that destabilize the gp41 core: determinants for stabilizing the SIV/CPmac envelope glycoprotein complex. Mutant structure.
Descriptor: gp41 envelope protein
Authors:Liu, J, Wang, S, LaBranche, C.C, Hoxie, J.A, Lu, M.
Deposit date:2001-08-03
Release date:2002-04-24
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Mutations that destabilize the gp41 core are determinants for stabilizing the simian immunodeficiency virus-CPmac envelope glycoprotein complex.
J.Biol.Chem., 277, 2002
1KFM
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BU of 1kfm by Molmil
Core side-chain packing and backbone conformation in Lpp-56 coiled-coil mutants
Descriptor: MAJOR OUTER MEMBRANE LIPOPROTEIN
Authors:Liu, J, Cao, W, Lu, M.
Deposit date:2001-11-21
Release date:2002-06-28
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2 Å)
Cite:Core side-chain packing and backbone conformation in Lpp-56 coiled-coil mutants.
J.Mol.Biol., 318, 2002
6U49
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BU of 6u49 by Molmil
Structure-based discovery of a novel small-molecule inhibitor of methicillin-resistant S. aureus
Descriptor: Alpha-hemolysin, SULFATE ION, fos-choline-14
Authors:Liu, J, Kozhaya, L, Torres, V.J, Unutmaz, D, Lu, M.
Deposit date:2019-08-23
Release date:2020-03-25
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Structure-based discovery of a small-molecule inhibitor of methicillin-resistantStaphylococcus aureusvirulence.
J.Biol.Chem., 295, 2020
1FNN
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BU of 1fnn by Molmil
CRYSTAL STRUCTURE OF CDC6P FROM PYROBACULUM AEROPHILUM
Descriptor: ADENOSINE-5'-DIPHOSPHATE, CELL DIVISION CONTROL PROTEIN 6, MAGNESIUM ION
Authors:Liu, J, Smith, C.L, DeRyckere, D, DeAngelis, K, Martin, G.S, Berger, J.M.
Deposit date:2000-08-22
Release date:2000-10-04
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure and function of Cdc6/Cdc18: implications for origin recognition and checkpoint control.
Mol.Cell, 6, 2000
5L0O
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BU of 5l0o by Molmil
IQGAP1 calponin homology domain fragment (CHDF) mutant K161C under oxidizing conditions
Descriptor: Ras GTPase-activating-like protein IQGAP1
Authors:Liu, J, Worthylake, D.
Deposit date:2016-07-27
Release date:2016-09-28
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.36 Å)
Cite:The IQGAP1 N-Terminus Forms Dimers, and the Dimer Interface Is Required for Binding F-Actin and Calcium-Bound Calmodulin.
Biochemistry, 55, 2016
4U88
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BU of 4u88 by Molmil
Structure of the DNA-Binding Domain of the Response Regulator SaeR from Staphylococcus aureus
Descriptor: Transcriptional regulator SaeR
Authors:Liu, J.S, Huang, C.H, Yang, C.S, Chen, S.C, Chen, Y.
Deposit date:2014-08-01
Release date:2015-08-12
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.355 Å)
Cite:Structure of the DNA-Binding Domain of the Response Regulator SaeR from Staphylococcus aureus
To Be Published
1F23
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BU of 1f23 by Molmil
CONTRIBUTION OF A BURIED HYDROGEN BOND TO HIV-1 ENVELOPE GLYCOPROTEIN STRUCTURE AND FUNCTION
Descriptor: TRANSMEMBRANE GLYCOPROTEIN
Authors:Liu, J, Shu, W, Fagan, M, Nunberg, J.H, Lu, M.
Deposit date:2000-05-23
Release date:2001-06-20
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural and functional analysis of the HIV gp41 core containing an Ile573 to Thr substitution: implications for membrane fusion.
Biochemistry, 40, 2001
6V51
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BU of 6v51 by Molmil
Spin-labeled T4 Lysozyme (9/131FnbY)-(4-Amino-TEMPO)
Descriptor: 4-amino-2,2,6,6-tetramethylpiperidin-1-ol, Endolysin
Authors:Liu, J, Morizumi, T, Ou, W.L, Wang, L, Ernst, O.P.
Deposit date:2019-12-02
Release date:2020-10-07
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Genetically Encoded Quinone Methides Enabling Rapid, Site-Specific, and Photocontrolled Protein Modification with Amine Reagents.
J.Am.Chem.Soc., 142, 2020
2DFS
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BU of 2dfs by Molmil
3-D structure of Myosin-V inhibited state
Descriptor: Calmodulin, Myosin-5A
Authors:Liu, J, Taylor, D.W, Krementsova, E.B, Trybus, K.M, Taylor, K.A.
Deposit date:2006-03-03
Release date:2006-04-25
Last modified:2024-03-13
Method:ELECTRON CRYSTALLOGRAPHY (24 Å)
Cite:Three-dimensional structure of the myosin V inhibited state by cryoelectron tomography
Nature, 442, 2006
7SO7
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BU of 7so7 by Molmil
Novel structural insights for a pair of monoclonal antibodies recognizing non-overlapping epitopes of the glucosyltransferase domain of Clostridium difficile toxin B
Descriptor: FAB B1 LC, Fab B1 HC, Toxin B
Authors:Liu, J.
Deposit date:2021-10-29
Release date:2022-05-11
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3.59 Å)
Cite:Novel structural insights for a pair of monoclonal antibodies recognizing non-overlapping epitopes of the glucosyltransferase domain of Clostridium difficile toxin B.
Curr Res Struct Biol, 4, 2022
7SO5
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BU of 7so5 by Molmil
Novel structural insights for a pair of monoclonal antibodies recognizing non-overlapping epitopes of the glucosyltransferase domain of Clostridium difficile toxin B
Descriptor: Fab B2 HC, Fab B2 LC, Toxin B
Authors:Liu, J.
Deposit date:2021-10-29
Release date:2022-05-11
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.797 Å)
Cite:Novel structural insights for a pair of monoclonal antibodies recognizing non-overlapping epitopes of the glucosyltransferase domain of Clostridium difficile toxin B.
Curr Res Struct Biol, 4, 2022
6WW4
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BU of 6ww4 by Molmil
Crystal structure of HERC2 ZZ domain in complex with histone H3 tail
Descriptor: GLYCEROL, Histone H3.1,E3 ubiquitin-protein ligase HERC2, ZINC ION
Authors:Liu, J, Vann, K.R, Kutateladze, T.G.
Deposit date:2020-05-07
Release date:2020-08-05
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.252 Å)
Cite:Structural Insight into Binding of the ZZ Domain of HERC2 to Histone H3 and SUMO1.
Structure, 28, 2020
2F17
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BU of 2f17 by Molmil
Mouse Thiamin Pyrophosphokinase in a Ternary Complex with Pyrithiamin Pyrophosphate and AMP at 2.5 angstrom
Descriptor: 1-[(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL]-3-(2-{[HYDROXY(PHOSPHONOOXY)PHOSPHORYL]OXY}ETHYL)-2-METHYLPYRIDINIUM, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ADENOSINE MONOPHOSPHATE, ...
Authors:Liu, J.Y, Timm, D.E, Hurley, T.D.
Deposit date:2005-11-14
Release date:2005-11-29
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Pyrithiamine as a substrate for thiamine pyrophosphokinase
J.Biol.Chem., 281, 2006
8HOG
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BU of 8hog by Molmil
Crystal structure of Bcl-2 in complex with sonrotoclax
Descriptor: Apoptosis regulator Bcl-2, ~{N}-[4-[(4-methyl-4-oxidanyl-cyclohexyl)methylamino]-3-nitro-phenyl]sulfonyl-4-[2-[(2~{S})-2-(2-propan-2-ylphenyl)pyrrolidin-1-yl]-7-azaspiro[3.5]nonan-7-yl]-2-(1~{H}-pyrrolo[2,3-b]pyridin-5-yloxy)benzamide
Authors:Liu, J, Xu, M, Feng, Y, Hong, Y, Liu, Y.
Deposit date:2022-12-10
Release date:2024-01-17
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Sonrotoclax overcomes BCL2 G101V mutation-induced venetoclax resistance in preclinical models of hematologic malignancy.
Blood, 143, 2024
8HOH
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Crystal structure of Bcl-2 G101V in complex with sonrotoclax
Descriptor: Apoptosis regulator Bcl-2, ~{N}-[4-[(4-methyl-4-oxidanyl-cyclohexyl)methylamino]-3-nitro-phenyl]sulfonyl-4-[2-[(2~{S})-2-(2-propan-2-ylphenyl)pyrrolidin-1-yl]-7-azaspiro[3.5]nonan-7-yl]-2-(1~{H}-pyrrolo[2,3-b]pyridin-5-yloxy)benzamide
Authors:Liu, J, Xu, M, Feng, Y, Hong, Y, Liu, Y.
Deposit date:2022-12-10
Release date:2024-01-17
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Sonrotoclax overcomes BCL2 G101V mutation-induced venetoclax resistance in preclinical models of hematologic malignancy.
Blood, 143, 2024
8HOI
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Crystal structure of Bcl-2 D103Y in complex with sonrotoclax
Descriptor: Apoptosis regulator Bcl-2, FORMIC ACID, ~{N}-[4-[(4-methyl-4-oxidanyl-cyclohexyl)methylamino]-3-nitro-phenyl]sulfonyl-4-[2-[(2~{S})-2-(2-propan-2-ylphenyl)pyrrolidin-1-yl]-7-azaspiro[3.5]nonan-7-yl]-2-(1~{H}-pyrrolo[2,3-b]pyridin-5-yloxy)benzamide
Authors:Liu, J, Xu, M, Feng, Y, Hong, Y, Liu, Y.
Deposit date:2022-12-10
Release date:2024-01-17
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Sonrotoclax overcomes BCL2 G101V mutation-induced venetoclax resistance in preclinical models of hematologic malignancy.
Blood, 143, 2024
8HTR
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BU of 8htr by Molmil
Crystal structure of Bcl2 in complex with S-9c
Descriptor: 4-[4-[(2~{S})-2-(2-chlorophenyl)pyrrolidin-1-yl]phenyl]-~{N}-[3-nitro-4-(oxan-4-ylmethylamino)phenyl]sulfonyl-2-(1~{H}-pyrrolo[2,3-b]pyridin-5-yloxy)benzamide, Apoptosis regulator Bcl-2
Authors:Liu, J, Xu, M, Feng, Y, Liu, Y.
Deposit date:2022-12-21
Release date:2024-05-15
Last modified:2024-06-05
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Discovery of the Clinical Candidate Sonrotoclax (BGB-11417), a Highly Potent and Selective Inhibitor for Both WT and G101V Mutant Bcl-2.
J.Med.Chem., 67, 2024
8HTS
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Crystal structure of Bcl2 in complex with S-10r
Descriptor: 4-[2-[(2~{S})-2-(2-cyclopropylphenyl)pyrrolidin-1-yl]-7-azaspiro[3.5]nonan-7-yl]-~{N}-[3-nitro-4-(oxan-4-ylmethylamino)phenyl]sulfonyl-2-(1~{H}-pyrrolo[2,3-b]pyridin-5-yloxy)benzamide, Apoptosis regulator Bcl-2
Authors:Liu, J, Xu, M, Feng, Y, Liu, Y.
Deposit date:2022-12-21
Release date:2024-05-15
Last modified:2024-06-05
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Discovery of the Clinical Candidate Sonrotoclax (BGB-11417), a Highly Potent and Selective Inhibitor for Both WT and G101V Mutant Bcl-2.
J.Med.Chem., 67, 2024

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