Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 488 results

2ZCR
DownloadVisualize
BU of 2zcr by Molmil
Crystal structure of the C(30) carotenoid dehydrosqualene synthase from Staphylococcus aureus complexed with bisphosphonate BPH-698
Descriptor: Dehydrosqualene synthase, MAGNESIUM ION, tripotassium (1R)-4-(4'-butylbiphenyl-4-yl)-1-phosphonatobutane-1-sulfonate
Authors:Liu, C.I, Jeng, W.Y, Wang, A.H, Oldfield, E.
Deposit date:2007-11-11
Release date:2008-03-11
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:A cholesterol biosynthesis inhibitor blocks Staphylococcus aureus virulence.
Science, 319, 2008
2ZCQ
DownloadVisualize
BU of 2zcq by Molmil
Crystal structure of the C(30) carotenoid dehydrosqualene synthase from Staphylococcus aureus complexed with bisphosphonate BPH-652
Descriptor: (1R)-4-(3-phenoxyphenyl)-1-phosphonobutane-1-sulfonic acid, Dehydrosqualene synthase, MAGNESIUM ION
Authors:Liu, C.I, Jeng, W.Y, Wang, A.H, Oldfield, E.
Deposit date:2007-11-11
Release date:2008-03-11
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.38 Å)
Cite:A cholesterol biosynthesis inhibitor blocks Staphylococcus aureus virulence.
Science, 319, 2008
4J5H
DownloadVisualize
BU of 4j5h by Molmil
Crystal Structure of B. thuringiensis AiiA mutant F107W with N-decanoyl-L-homoserine bound at the active site
Descriptor: GLYCEROL, N-acyl homoserine lactonase, N-decanoyl-L-homoserine, ...
Authors:Liu, C.F, Liu, D, Momb, J, Thomas, P.W, Lajoie, A, Petsko, G.A, Fast, W, Ringe, D.
Deposit date:2013-02-08
Release date:2013-06-26
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:A phenylalanine clamp controls substrate specificity in the quorum-quenching metallo-gamma-lactonase from Bacillus thuringiensis.
Biochemistry, 52, 2013
3DEZ
DownloadVisualize
BU of 3dez by Molmil
Crystal structure of Orotate phosphoribosyltransferase from Streptococcus mutans
Descriptor: Orotate phosphoribosyltransferase, SULFATE ION
Authors:Liu, C.P, Gao, Z.Q, Hou, H.F, Li, L.F, Su, X.D, Dong, Y.H.
Deposit date:2008-06-11
Release date:2009-06-16
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structure of orotate phosphoribosyltransferase from the caries pathogen Streptococcus mutans
Acta Crystallogr.,Sect.F, 66, 2010
4J5F
DownloadVisualize
BU of 4j5f by Molmil
Crystal Structure of B. thuringiensis AiiA mutant F107W
Descriptor: GLYCEROL, N-acyl homoserine lactonase, ZINC ION
Authors:Liu, C.F, Liu, D, Momb, J, Thomas, P.W, Lajoie, A, Petsko, G.A, Fast, W, Ringe, D.
Deposit date:2013-02-08
Release date:2013-06-26
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.72 Å)
Cite:A phenylalanine clamp controls substrate specificity in the quorum-quenching metallo-gamma-lactonase from Bacillus thuringiensis.
Biochemistry, 52, 2013
6PQN
DownloadVisualize
BU of 6pqn by Molmil
Crystal structure of HzTransib transposase
Descriptor: GLYCEROL, PHOSPHATE ION, Putative DNA-mediated transposase, ...
Authors:Liu, C, Yang, Y, Schatz, D.G.
Deposit date:2019-07-09
Release date:2019-10-09
Last modified:2019-12-18
Method:X-RAY DIFFRACTION (3.01 Å)
Cite:Structures of a RAG-like transposase during cut-and-paste transposition.
Nature, 575, 2019
3VJE
DownloadVisualize
BU of 3vje by Molmil
Crystal structure of the Y248A mutant of C(30) carotenoid dehydrosqualene synthase from Staphylococcus aureus in complex with zaragozic acid A
Descriptor: Dehydrosqualene synthase, Zaragozic acid A
Authors:Liu, C.I, Jeng, W.Y, Chang, W.J, Wang, A.H.J.
Deposit date:2011-10-14
Release date:2012-04-11
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.12 Å)
Cite:Binding modes of zaragozic acid A to human squalene synthase and staphylococcal dehydrosqualene synthase
J.Biol.Chem., 287, 2012
3VJD
DownloadVisualize
BU of 3vjd by Molmil
Crystal structure of the Y248A mutant of C(30) carotenoid dehydrosqualene synthase from Staphylococcus aureus
Descriptor: Dehydrosqualene synthase, L(+)-TARTARIC ACID
Authors:Liu, C.I, Jeng, W.Y, Chang, W.J, Wang, A.H.J.
Deposit date:2011-10-14
Release date:2012-04-11
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.48 Å)
Cite:Binding modes of zaragozic acid A to human squalene synthase and staphylococcal dehydrosqualene synthase
J.Biol.Chem., 287, 2012
7JRE
DownloadVisualize
BU of 7jre by Molmil
Crystal structure of EV-D68 2A protease C107A mutant
Descriptor: Protease 2A, ZINC ION
Authors:Liu, C, Lee, M.-Y, Liu, W, Wang, J.
Deposit date:2020-08-12
Release date:2021-08-25
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of EV-D68 2A protease C107A mutant
To Be Published
6PQY
DownloadVisualize
BU of 6pqy by Molmil
Cryo-EM structure of HzTransib/TIR DNA transposon end complex (TEC)
Descriptor: DNA (5'-D(P*CP*AP*CP*GP*GP*TP*GP*GP*AP*TP*CP*GP*AP*AP*AP*A)-3'), DNA (5'-D(P*TP*TP*TP*TP*CP*GP*AP*TP*CP*CP*AP*CP*CP*GP*TP*G)-3'), Putative DNA-mediated transposase
Authors:Liu, C, Yang, Y, Schatz, D.G.
Deposit date:2019-07-10
Release date:2019-10-09
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (4.2 Å)
Cite:Structures of a RAG-like transposase during cut-and-paste transposition.
Nature, 575, 2019
6PR5
DownloadVisualize
BU of 6pr5 by Molmil
Cryo-EM structure of HzTransib strand transfer complex (STC)
Descriptor: DNA (30-MER), DNA (39-MER), DNA (5'-D(*GP*AP*TP*CP*TP*GP*GP*CP*CP*TP*AP*GP*AP*TP*CP*TP*CP*A)-3'), ...
Authors:Liu, C, Yang, Y, Schatz, D.G.
Deposit date:2019-07-10
Release date:2019-10-09
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Structures of a RAG-like transposase during cut-and-paste transposition.
Nature, 575, 2019
6PQU
DownloadVisualize
BU of 6pqu by Molmil
Cryo-EM structure of HzTransib/nicked TIR substrate DNA pre-reaction complex (PRC)
Descriptor: DNA (5'-D(P*AP*TP*CP*TP*GP*GP*CP*CP*TP*AP*GP*AP*TP*CP*T)-3'), DNA (5'-D(P*CP*AP*CP*GP*GP*TP*GP*GP*AP*TP*CP*GP*AP*AP*AP*A)-3'), DNA-mediated transposase, ...
Authors:Liu, C, Yang, Y, Schatz, D.G.
Deposit date:2019-07-10
Release date:2019-10-09
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Structures of a RAG-like transposase during cut-and-paste transposition.
Nature, 575, 2019
6PQX
DownloadVisualize
BU of 6pqx by Molmil
Cryo-EM structure of HzTransib/nicked TIR substrate DNA hairpin forming complex (HFC)
Descriptor: CALCIUM ION, DNA (5'-D(P*CP*AP*CP*GP*GP*TP*GP*GP*AP*TP*CP*GP*AP*AP*AP*A)-3'), DNA (5'-D(P*TP*CP*TP*GP*GP*CP*CP*TP*AP*GP*AP*TP*CP*T)-3'), ...
Authors:Liu, C, Yang, Y, Schatz, D.G.
Deposit date:2019-07-10
Release date:2019-10-09
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (4.6 Å)
Cite:Structures of a RAG-like transposase during cut-and-paste transposition.
Nature, 575, 2019
2RI1
DownloadVisualize
BU of 2ri1 by Molmil
Crystal Structure of glucosamine 6-phosphate deaminase (NagB) with GlcN6P from S. mutans
Descriptor: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 2-amino-2-deoxy-6-O-phosphono-alpha-D-glucopyranose, Glucosamine-6-phosphate deaminase
Authors:Liu, C, Li, D, Su, X.D.
Deposit date:2007-10-10
Release date:2008-03-25
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.03 Å)
Cite:Ring-opening mechanism revealed by crystal structures of NagB and its ES intermediate complex
J.Mol.Biol., 379, 2008
6PQR
DownloadVisualize
BU of 6pqr by Molmil
Cryo-EM structure of HzTransib/intact TIR substrate DNA pre-reaction complex (PRC)
Descriptor: DNA (5'-D(*CP*TP*AP*GP*AP*TP*CP*TP*CP*AP*CP*GP*GP*TP*GP*GP*AP*TP*CP*GP*AP*AP*AP*A)-3'), DNA (5'-D(P*TP*TP*TP*TP*CP*GP*AP*TP*CP*CP*AP*CP*CP*GP*TP*GP*AP*GP*AP*TP*CP*TP*AP*G)-3'), DNA-mediated transposase, ...
Authors:Liu, C, Yang, Y, Schatz, D.G.
Deposit date:2019-07-09
Release date:2019-10-09
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Structures of a RAG-like transposase during cut-and-paste transposition.
Nature, 575, 2019
3LOW
DownloadVisualize
BU of 3low by Molmil
Crystal structure of Beta 2 Microglobulin domain-swapped dimer
Descriptor: Beta-2-microglobulin, GLYCEROL
Authors:Liu, C, Eisenberg, D.
Deposit date:2010-02-04
Release date:2010-12-08
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Beta2-microglobulin forms three-dimensional domain-swapped amyloid fibrils with disulfide linkages.
Nat.Struct.Mol.Biol., 18, 2011
3LOZ
DownloadVisualize
BU of 3loz by Molmil
Crystal structure of Beta 2 Microglobulin amyloidogenic segment LSFSKD
Descriptor: Beta-2-microglobulin segment LSFSKD
Authors:Liu, C, Sawaya, M, Eisenberg, D.
Deposit date:2010-02-04
Release date:2010-12-08
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Beta2-microglobulin forms three-dimensional domain-swapped amyloid fibrils with disulfide linkages.
Nat.Struct.Mol.Biol., 18, 2011
8SM6
DownloadVisualize
BU of 8sm6 by Molmil
Aerobic, Diiron(III)-metalated SfbO
Descriptor: Amidohydrolase family protein, FE (III) ION, SULFATE ION
Authors:Liu, C, Powell, M.M, Rittle, J.
Deposit date:2023-04-25
Release date:2024-01-24
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.39 Å)
Cite:Bioinformatic Discovery of a Cambialistic Monooxygenase.
J.Am.Chem.Soc., 146, 2024
8SM7
DownloadVisualize
BU of 8sm7 by Molmil
Air-oxidized G. y4 TruffO expressed from M9 minimal medium supplemented with Fe
Descriptor: Amidohydrolase 2, FE (III) ION, SODIUM ION
Authors:Liu, C, Rittle, J.
Deposit date:2023-04-25
Release date:2024-03-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Bioinformatic Discovery of a Cambialistic Monooxygenase.
J.Am.Chem.Soc., 146, 2024
8SMA
DownloadVisualize
BU of 8sma by Molmil
SfbO with di-Manganese cofactor
Descriptor: Amidohydrolase family protein, MANGANESE (II) ION, SULFATE ION
Authors:Liu, C, Rittle, J.
Deposit date:2023-04-25
Release date:2024-03-13
Method:X-RAY DIFFRACTION (2.18 Å)
Cite:Bioinformatic Discovery of a Cambialistic Monooxygenase.
J.Am.Chem.Soc., 146, 2024
8SM8
DownloadVisualize
BU of 8sm8 by Molmil
Air-oxidized A. ca TruffO expressed from M9 minimal medium supplemented with Fe
Descriptor: FE (III) ION, MAGNESIUM ION, Putative amidohydrolase, ...
Authors:Liu, C, Rittle, J.
Deposit date:2023-04-25
Release date:2024-03-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Bioinformatic Discovery of a Cambialistic Monooxygenase.
J.Am.Chem.Soc., 146, 2024
8TXR
DownloadVisualize
BU of 8txr by Molmil
E. coli ExoVII(H238A)
Descriptor: Exodeoxyribonuclease 7 large subunit, Exodeoxyribonuclease 7 small subunit
Authors:Liu, C, Berger, J.M.
Deposit date:2023-08-24
Release date:2024-01-31
Last modified:2024-02-07
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Structure of Escherichia coli exonuclease VII.
Proc.Natl.Acad.Sci.USA, 121, 2024
8SM9
DownloadVisualize
BU of 8sm9 by Molmil
Air-oxidized C. fi TruffO expressed from M9 minimal medium supplemented with Fe
Descriptor: Amidohydrolase 2, FE (III) ION
Authors:Liu, C, Rittle, J.
Deposit date:2023-04-25
Release date:2024-03-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Bioinformatic Discovery of a Cambialistic Monooxygenase.
J.Am.Chem.Soc., 146, 2024
1ZG3
DownloadVisualize
BU of 1zg3 by Molmil
Crystal structure of the isoflavanone 4'-O-methyltransferase complexed with SAH and 2,7,4'-trihydroxyisoflavanone
Descriptor: (2S,3R)-2,7-DIHYDROXY-3-(4-HYDROXYPHENYL)-2,3-DIHYDRO-4H-CHROMEN-4-ONE, S-ADENOSYL-L-HOMOCYSTEINE, isoflavanone 4'-O-methyltransferase
Authors:Liu, C.-J, Deavours, B.E, Richard, S, Ferrer, J.-L, Dixon, R.A, Noel, J.P.
Deposit date:2005-04-20
Release date:2006-08-01
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Structural basis for dual functionality of isoflavonoid O-methyltransferases in the evolution of plant defense responses.
Plant Cell, 18, 2006
1ZHF
DownloadVisualize
BU of 1zhf by Molmil
Crystal structure of selenomethionine substituted isoflavanone 4'-O-methyltransferase
Descriptor: Isoflavanone 4'-O-methyltransferase, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Liu, C.-J, Deavours, B.E, Richard, S, Ferrer, J.-L, Dixon, R.A, Noel, J.P.
Deposit date:2005-04-25
Release date:2006-08-01
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural basis for dual functionality of isoflavonoid O-methyltransferases in the evolution of plant defense responses.
Plant Cell, 18, 2006

226707

PDB entries from 2024-10-30

PDB statisticsPDBj update infoContact PDBjnumon