3LOZ
Crystal structure of Beta 2 Microglobulin amyloidogenic segment LSFSKD
Summary for 3LOZ
| Entry DOI | 10.2210/pdb3loz/pdb |
| Related | 3LOW |
| Descriptor | Beta-2-microglobulin segment LSFSKD (2 entities in total) |
| Functional Keywords | steric zipper, beta spine, beta 2 microglobulin, protein fibril |
| Cellular location | Secreted . Note=(Microbial infection) In the presence of M: P61769 |
| Total number of polymer chains | 4 |
| Total formula weight | 2787.08 |
| Authors | Liu, C.,Sawaya, M.,Eisenberg, D. (deposition date: 2010-02-04, release date: 2010-12-08, Last modification date: 2024-02-21) |
| Primary citation | Liu, C.,Sawaya, M.R.,Eisenberg, D. Beta2-microglobulin forms three-dimensional domain-swapped amyloid fibrils with disulfide linkages. Nat.Struct.Mol.Biol., 18:49-55, 2011 Cited by PubMed Abstract: β₂-microglobulin (β₂m) is the light chain of the type I major histocompatibility complex. It deposits as amyloid fibrils within joints during long-term hemodialysis treatment. Despite the devastating effects of dialysis-related amyloidosis, full understanding of how fibrils form from soluble β₂m remains elusive. Here we show that β₂m can oligomerize and fibrillize via three-dimensional domain swapping. Isolating a covalently bound, domain-swapped dimer from β₂m oligomers on the pathway to fibrils, we were able to determine its crystal structure. The hinge loop that connects the swapped domain to the core domain includes the fibrillizing segment LSFSKD, whose atomic structure we also determined. The LSFSKD structure reveals a class 5 steric zipper, akin to other amyloid spines. The structures of the dimer and the zipper spine fit well into an atomic model for this fibrillar form of β₂m, which assembles slowly under physiological conditions. PubMed: 21131979DOI: 10.1038/nsmb.1948 PDB entries with the same primary citation |
| Experimental method | X-RAY DIFFRACTION (1.8 Å) |
Structure validation
Download full validation report
