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PDB: 845 results

9G5Z
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Nanobody-mediated activation and inhibition of Staphylococcus aureus MazF
Descriptor: CHLORIDE ION, Endoribonuclease MazF, GLYCEROL, ...
Authors:Prolic-Kalinsek, M, Haesaerts, S, Loris, R.
Deposit date:2024-07-17
Release date:2024-07-24
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (3.42909384 Å)
Cite:Staphylococcus aureus MazF in complex with Nanobody 11
To Be Published
9G2G
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Staphylococcus aureus MazF in complex with nanobody 5
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Endoribonuclease MazF, Nanobody 5
Authors:Prolic-Kalinsek, M, Zorzini, V, Haesaerts, S, Loris, R.
Deposit date:2024-07-10
Release date:2024-07-24
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.80048239 Å)
Cite:Nanobody-mediated activation and inhibition of Staphylococcus aureus MazF
To Be Published
9G5L
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Stapylococcus aureus MazF in complex with nanobody 10
Descriptor: CHLORIDE ION, Endoribonuclease MazF, Nanobody 10
Authors:Prolic-Kalinsek, M, Haesaerts, S, Loris, R.
Deposit date:2024-07-17
Release date:2024-07-24
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.82220376 Å)
Cite:Nanobody-mediated activation and inhibition of Staphylococcus aureus MazF
To Be Published
1KS0
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The First Fibronectin Type II Module from Human Matrix Metalloproteinase 2
Descriptor: Matrix Metalloproteinase 2
Authors:Gehrmann, M, Briknarova, K, Banyai, L, Patthy, L, Llinas, M.
Deposit date:2002-01-10
Release date:2002-02-20
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:The col-1 module of human matrix metalloproteinase-2 (MMP-2): structural/functional relatedness between gelatin-binding fibronectin type II modules and lysine-binding kringle domains.
Biol.Chem., 383, 2002
6EXM
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BU of 6exm by Molmil
The Transcriptional Regulator PrfA from Listeria Monocytogenes in complex with a ring-fused 2-pyridone (MK202)
Descriptor: ISOPROPYL ALCOHOL, Listeriolysin positive regulatory factor A, SODIUM ION, ...
Authors:Grundstrom, C, Begum, A, Hall, M, Kulen, M, Lindgren, M, Johansson, J, Almqvist, F, Sauer, U.H, Sauer-Eriksson, A.E.
Deposit date:2017-11-08
Release date:2018-05-02
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structure-Based Design of Inhibitors Targeting PrfA, the Master Virulence Regulator of Listeria monocytogenes.
J. Med. Chem., 61, 2018
6EUT
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The Transcriptional Regulator PrfA from Listeria Monocytogenes in complex with a ring-fused 2-pyridone (KSK67)
Descriptor: (3~{R})-8-cyclopropyl-7-[(4-methylnaphthalen-1-yl)methyl]-5-oxidanylidene-2,3-dihydro-[1,3]thiazolo[3,2-a]pyridine-3-carboxylic acid, GLYCEROL, ISOPROPYL ALCOHOL, ...
Authors:Begum, A, Hall, M, Grundstrom, C, Kulen, M, Lindgren, M, Johansson, J, Almqvist, F, Sauer, U.H, Sauer-Eriksson, A.E.
Deposit date:2017-10-31
Release date:2018-05-02
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure-Based Design of Inhibitors Targeting PrfA, the Master Virulence Regulator of Listeria monocytogenes.
J. Med. Chem., 61, 2018
6EUZ
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The Transcriptional Regulator PrfA from Listeria Monocytogenes in complex with a ring-fused 2-pyridone (MK37)
Descriptor: (3~{R})-8-methoxy-7-(naphthalen-1-ylmethyl)-5-oxidanylidene-2,3-dihydro-[1,3]thiazolo[3,2-a]pyridine-3-carboxylic acid, ISOPROPYL ALCOHOL, Listeriolysin positive regulatory factor A, ...
Authors:Begum, A, Hall, M, Grundstrom, C, Kulen, M, Lindgren, M, Johansson, J, Almqvist, F, Sauer, U.H, Sauer-Eriksson, A.E.
Deposit date:2017-10-31
Release date:2018-05-02
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structure-Based Design of Inhibitors Targeting PrfA, the Master Virulence Regulator of Listeria monocytogenes.
J. Med. Chem., 61, 2018
6EXL
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The Transcriptional Regulator PrfA from Listeria Monocytogenes in complex with a ring-fused 2-pyridone (MK206) - folded HTH motif
Descriptor: ISOPROPYL ALCOHOL, Listeriolysin positive regulatory factor A, SODIUM ION, ...
Authors:Hall, M, Grundstrom, C, Begum, A, Kulen, M, Lindgren, M, Johansson, J, Almqvist, F, Sauer, U.H, Sauer-Eriksson, A.E.
Deposit date:2017-11-08
Release date:2018-05-02
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure-Based Design of Inhibitors Targeting PrfA, the Master Virulence Regulator of Listeria monocytogenes.
J. Med. Chem., 61, 2018
4CXN
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Crystal structure of human insulin analogue (NMe-AlaB8)-insulin crystal form I
Descriptor: INSULIN A CHAIN, INSULIN B CHAIN
Authors:Kosinova, L, Veverka, V, Novotna, P, Collinsova, M, Urbanova, M, Jiracek, J, Moody, N.R, Turkenburg, J.P, Brzozowski, A.M, Zakova, L.
Deposit date:2014-04-07
Release date:2014-05-28
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:An Insight Into Structural and Biological Relevance of the T/R Transition of the B-Chain N-Terminus in Human Insulin.
Biochemistry, 53, 2014
304D
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BU of 304d by Molmil
SIDE-BY-SIDE BINDING OF DISTAMYCIN MOLECULES TO D(ICATATIC) IN THE MONOCLINIC FORM
Descriptor: DISTAMYCIN A, DNA (5'-D(*IP*CP*AP*TP*AP*TP*IP*C)-3')
Authors:Chen, X, Ramakrishnan, B, Sundaralingam, M.
Deposit date:1997-01-03
Release date:1997-09-25
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structures of the side-by-side binding of distamycin to AT-containing DNA octamers d(ICITACIC) and d(ICATATIC).
J.Mol.Biol., 267, 1997
4CY7
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Crystal structure of human insulin analogue (NMe-AlaB8)-insulin crystal form II
Descriptor: ACETATE ION, INSULIN A CHAIN, INSULIN B CHAIN, ...
Authors:Kosinova, L, Veverka, V, Novotna, P, Collinsova, M, Urbanova, M, Jiracek, J, Moody, N.R, Turkenburg, J.P, Brzozowski, A.M, Zakova, L.
Deposit date:2014-04-10
Release date:2014-05-28
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:An Insight Into Structural and Biological Relevance of the T/R Transition of the B-Chain N-Terminus in Human Insulin.
Biochemistry, 53, 2014
1TRA
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BU of 1tra by Molmil
RESTRAINED REFINEMENT OF THE MONOCLINIC FORM OF YEAST PHENYLALANINE TRANSFER RNA. TEMPERATURE FACTORS AND DYNAMICS, COORDINATED WATERS, AND BASE-PAIR PROPELLER TWIST ANGLES
Descriptor: MAGNESIUM ION, TRNAPHE
Authors:Westhof, E, Sundaralingam, M.
Deposit date:1986-05-16
Release date:1986-07-14
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (3 Å)
Cite:Restrained refinement of the monoclinic form of yeast phenylalanine transfer RNA. Temperature factors and dynamics, coordinated waters, and base-pair propeller twist angles.
Biochemistry, 25, 1986
6EFK
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Crystal structure of the human CHIP TPR domain in complex with a 5mer acetylated HSP70 peptide
Descriptor: ACE-ILE-GLU-GLU-VAL-ASP, E3 ubiquitin-protein ligase CHIP, SODIUM ION
Authors:Basu, K, Ravalin, M, Bohn, M.-F, Craik, C.S, Gestwicki, J.E.
Deposit date:2018-08-16
Release date:2019-07-31
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Specificity for latent C termini links the E3 ubiquitin ligase CHIP to caspases.
Nat.Chem.Biol., 15, 2019
6ZA6
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M. tuberculosis salicylate synthase MbtI in complex with Ba2+
Descriptor: BARIUM ION, CHLORIDE ION, GLYCEROL, ...
Authors:Mori, M, Villa, S, Meneghetti, F, Bellinzoni, M.
Deposit date:2020-06-04
Release date:2020-07-01
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.804 Å)
Cite:Shedding X-ray Light on the Role of Magnesium in the Activity ofMycobacterium tuberculosisSalicylate Synthase (MbtI) for Drug Design.
J.Med.Chem., 63, 2020
6ZA5
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BU of 6za5 by Molmil
M. tuberculosis salicylate synthase MbtI in complex with salicylate and Mg2+
Descriptor: 2-HYDROXYBENZOIC ACID, ACETATE ION, MAGNESIUM ION, ...
Authors:Mori, M, Villa, S, Meneghetti, F, Bellinzoni, M.
Deposit date:2020-06-04
Release date:2020-07-15
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.109 Å)
Cite:Shedding X-ray Light on the Role of Magnesium in the Activity ofMycobacterium tuberculosisSalicylate Synthase (MbtI) for Drug Design.
J.Med.Chem., 63, 2020
6ZBA
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Crystal structure of PDE4D2 in complex with inhibitor LEO39652
Descriptor: 1,2-ETHANEDIOL, 2-methylpropyl 1-[8-methoxy-5-(1-oxidanylidene-3~{H}-2-benzofuran-5-yl)-[1,2,4]triazolo[1,5-a]pyridin-2-yl]cyclopropane-1-carboxylate, DIMETHYL SULFOXIDE, ...
Authors:Akutsu, M, Hakansson, M, Welin, M, Svensson, A, Logan, D.T, Sorensen, M.D.
Deposit date:2020-06-08
Release date:2020-09-23
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Discovery and Early Clinical Development of Isobutyl 1-[8-Methoxy-5-(1-oxo-3 H -isobenzofuran-5-yl)-[1,2,4]triazolo[1,5- a ]pyridin-2-yl]cyclopropanecarboxylate (LEO 39652), a Novel "Dual-Soft" PDE4 Inhibitor for Topical Treatment of Atopic Dermatitis.
J.Med.Chem., 63, 2020
323D
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CRYSTAL STRUCTURES OF D(CCGGGCCM5CGG)-ORTHOGONAL FORM
Descriptor: DNA (5'-D(*CP*CP*GP*GP*GP*CP*CP*(5CM)P*GP*G)-3'), SPERMINE
Authors:Tippin, D.B, Sundaralingam, M.
Deposit date:1997-03-17
Release date:1997-05-22
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Nine polymorphic crystal structures of d(CCGGGCCCGG), d(CCGGGCCm5CGG), d(Cm5CGGGCCm5CGG) and d(CCGGGCC(Br)5CGG) in three different conformations: effects of spermine binding and methylation on the bending and condensation of A-DNA.
J.Mol.Biol., 267, 1997
395D
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CRYSTAL STRUCTURES OF TWO ISOMORPHOUS A-DNA DECAMERS D(GTACGCGTAC) AND D(GGCCGCGGCC)
Descriptor: DNA (5'-D(*GP*TP*AP*CP*GP*CP*GP*TP*AP*C)-3')
Authors:Ban, C, Sundaralingam, M.
Deposit date:1998-04-29
Release date:1998-05-01
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal Structures of Two Isomorphous A-DNA Decamers d(GTACGCGTAC) and d(GGCCGCGGCC)
To be Published
315D
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BU of 315d by Molmil
CRYSTAL STRUCTURE OF AN ALTERNATING OCTAMER R(GUAUGUA)D(C) WITH ADJACENT G-U WOBBLE PAIRS
Descriptor: DNA/RNA (5'-R(*GP*UP*AP*UP*GP*UP*AP*)-D(*C)-3')
Authors:Biswas, R, Wahl, M.C, Ban, C, Sundaralingam, M.
Deposit date:1997-02-26
Release date:1997-09-23
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.38 Å)
Cite:Crystal structure of an alternating octamer r(GUAUGUA)dC with adjacent G x U wobble pairs
J.Mol.Biol., 267, 1997
325D
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CRYSTAL STRUCTURES OF D(CM5CGGGCCM5CGG)-HEXAGONAL FORM
Descriptor: DNA (5'-D(*CP*(5CM)P*GP*GP*GP*CP*CP*(5CM)P*GP*G)-3')
Authors:Tippin, D.B, Sundaralingam, M.
Deposit date:1997-03-17
Release date:1997-05-22
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Nine polymorphic crystal structures of d(CCGGGCCCGG), d(CCGGGCCm5CGG), d(Cm5CGGGCCm5CGG) and d(CCGGGCC(Br)5CGG) in three different conformations: effects of spermine binding and methylation on the bending and condensation of A-DNA.
J.Mol.Biol., 267, 1997
375D
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A NOVEL END-TO-END BINDING OF TWO NETROPSINS TO THE DNA DECAMER D(CCCCCIIIII)2
Descriptor: DNA (5'-D(*CP*CP*CP*CP*CP*IP*IP*IP*IP*I)-3'), NETROPSIN
Authors:Chen, X, Rao, S.T, Sekar, K, Sundaralingam, M.
Deposit date:1998-01-14
Release date:1998-12-02
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:A Novel End-to-End Binding of Two Netropsins to the DNA Decamers d(CCCCCIIIII) 2, d(CCCBr5CCIIIII)2, d(CBr5CCCCIIIII)2
Nucleic Acids Res., 26, 1998
9EV4
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Pyruvate:quinone oxidoreductase (PQO) from Corynebacterium glutamicum CS176
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (Cytochrome), ...
Authors:Da Silva Lameira, C, Muenssinger, S, Yang, L, Eikmanns, B.J, Bellinzoni, M.
Deposit date:2024-03-28
Release date:2024-08-07
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.474 Å)
Cite:Corynebacterium glutamicum pyruvate:quinone oxidoreductase: an enigmatic metabolic enzyme with unusual structural features.
Febs J., 291, 2024
9EV6
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BU of 9ev6 by Molmil
Corynebacterium glutamicum pyruvate:quinone oxidoreductase (PQO), C-terminal truncated construct
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, MAGNESIUM ION, THIAMINE DIPHOSPHATE, ...
Authors:Da Silva Lameira, C, Muenssinger, S, Yang, L, Eikmanns, B.J, Bellinzoni, M.
Deposit date:2024-03-28
Release date:2024-08-07
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.891 Å)
Cite:Corynebacterium glutamicum pyruvate:quinone oxidoreductase: an enigmatic metabolic enzyme with unusual structural features.
Febs J., 291, 2024
9EV5
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Corynebacterium glutamicum CS176 pyruvate:quinone oxidoreductase (PQO) in complex with FAD and thiamine diphosphate-magnesium ion
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, MAGNESIUM ION, THIAMINE DIPHOSPHATE, ...
Authors:Da Silva Lameira, C, Muenssinger, S, Yang, L, Eikmanns, B.J, Bellinzoni, M.
Deposit date:2024-03-28
Release date:2024-08-07
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.863 Å)
Cite:Corynebacterium glutamicum pyruvate:quinone oxidoreductase: an enigmatic metabolic enzyme with unusual structural features.
Febs J., 291, 2024
9EV3
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Corynebacterium glutamicum pyruvate:quinone oxidoreductase (PQO) purified from bacteria grown in acetate minimal medium
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, MAGNESIUM ION, THIAMINE DIPHOSPHATE, ...
Authors:Da Silva Lameira, C, Muenssinger, S, Yang, L, Eikmanns, B.J, Bellinzoni, M.
Deposit date:2024-03-28
Release date:2024-08-07
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.219 Å)
Cite:Corynebacterium glutamicum pyruvate:quinone oxidoreductase: an enigmatic metabolic enzyme with unusual structural features.
Febs J., 291, 2024

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