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PDB: 58 results

5YL1
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T=1 subviral particle of Penaeus vannamei nodavirus capsid protein deletion mutant (delta 1-37 & 251-368)
Descriptor: CALCIUM ION, Capsid protein
Authors:Chen, N.C, Yoshimura, M, Lin, C.C, Guan, H.H, Chuankhayan, P, Chen, C.J.
Deposit date:2017-10-16
Release date:2018-12-12
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (3.12 Å)
Cite:The atomic structures of shrimp nodaviruses reveal new dimeric spike structures and particle polymorphism.
Commun Biol, 2, 2019
6AB5
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BU of 6ab5 by Molmil
Cryo-EM structure of T=1 Penaeus vannamei nodavirus
Descriptor: Capsid protein
Authors:Chen, N.C, Miyazaki, N, Yoshimura, M, Guan, H.H, Lin, C.C, Iwasaki, K, Chen, C.J.
Deposit date:2018-07-20
Release date:2019-03-20
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:The atomic structures of shrimp nodaviruses reveal new dimeric spike structures and particle polymorphism.
Commun Biol, 2, 2019
6AB6
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Cryo-EM structure of T=3 Penaeus vannamei nodavirus
Descriptor: CALCIUM ION, Capsid protein
Authors:Chen, N.C, Miyazaki, N, Yoshimura, M, Guan, H.H, Lin, C.C, Iwasaki, K, Chen, C.J.
Deposit date:2018-07-20
Release date:2019-03-20
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:The atomic structures of shrimp nodaviruses reveal new dimeric spike structures and particle polymorphism.
Commun Biol, 2, 2019
8W4M
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Crystal structure of open conformation of human immunoglobulin Fc in presence of EndoSz
Descriptor: Immunoglobulin gamma-1 heavy chain, ZINC ION, beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Guan, H.H, Lin, C.C, Hsieh, Y.C, Chen, C.J.
Deposit date:2023-08-24
Release date:2024-07-03
Last modified:2024-07-10
Method:X-RAY DIFFRACTION (2.18 Å)
Cite:Structure-Based High-Efficiency Homogeneous Antibody Platform by Endoglycosidase Sz Provides Insights into Its Transglycosylation Mechanism.
Jacs Au, 4, 2024
8W4L
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Crystal structure of closed conformation of human immunoglobulin Fc in presence of EndoSz
Descriptor: CHLORIDE ION, Immunoglobulin gamma-1 heavy chain, N-acetyl-alpha-neuraminic acid-(2-6)-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Guan, H.H, Lin, C.C, Hsieh, Y.C, Chen, C.J.
Deposit date:2023-08-24
Release date:2024-07-03
Last modified:2024-07-10
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structure-Based High-Efficiency Homogeneous Antibody Platform by Endoglycosidase Sz Provides Insights into Its Transglycosylation Mechanism.
Jacs Au, 4, 2024
8W4G
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BU of 8w4g by Molmil
Crystal structure of EndoSz mutant D234M, from Streptococcus equi subsp. Zooepidemicus Sz105
Descriptor: CALCIUM ION, glycoside hydrolase
Authors:Guan, H.H, Lin, C.C, Hsieh, Y.C, Chen, C.J.
Deposit date:2023-08-24
Release date:2024-07-03
Last modified:2024-07-10
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Structure-Based High-Efficiency Homogeneous Antibody Platform by Endoglycosidase Sz Provides Insights into Its Transglycosylation Mechanism.
Jacs Au, 4, 2024
8W4N
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Crystal structure of EndoSz mutant D234M, in space group P21, in complex with oligosaccharide G2S1
Descriptor: CALCIUM ION, Glycoside hydrolase, N-acetyl-alpha-neuraminic acid-(2-6)-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Guan, H.H, Lin, C.C, Hsieh, Y.C, Chen, C.J.
Deposit date:2023-08-24
Release date:2024-07-03
Last modified:2024-07-10
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structure-Based High-Efficiency Homogeneous Antibody Platform by Endoglycosidase Sz Provides Insights into Its Transglycosylation Mechanism.
Jacs Au, 4, 2024
8W4I
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BU of 8w4i by Molmil
Crystal structure of EndoSz mutant D234M in space group P21
Descriptor: CALCIUM ION, glycoside hydrolase
Authors:Guan, H.H, Lin, C.C, Hsieh, Y.C, Chen, C.J.
Deposit date:2023-08-24
Release date:2024-07-03
Last modified:2024-07-10
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structure-Based High-Efficiency Homogeneous Antibody Platform by Endoglycosidase Sz Provides Insights into Its Transglycosylation Mechanism.
Jacs Au, 4, 2024
8X8G
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Crystal structure of EndoSz mutant D234M, from Streptococcus equi subsp. Zooepidemicus Sz105, in complex with oligosaccharide G2S2-oxazoline
Descriptor: 2-METHYL-4,5-DIHYDRO-(1,2-DIDEOXY-ALPHA-D-GLUCOPYRANOSO)[2,1-D]-1,3-OXAZOLE, CALCIUM ION, N-acetyl-alpha-neuraminic acid-(2-6)-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[N-acetyl-alpha-neuraminic acid-(2-6)-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose, ...
Authors:Guan, H.H, Lin, C.C, Hsieh, Y.C, Chen, C.J.
Deposit date:2023-11-27
Release date:2024-07-03
Last modified:2024-07-10
Method:X-RAY DIFFRACTION (2.27 Å)
Cite:Structure-Based High-Efficiency Homogeneous Antibody Platform by Endoglycosidase Sz Provides Insights into Its Transglycosylation Mechanism.
Jacs Au, 4, 2024
4HO5
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BU of 4ho5 by Molmil
Crystal structure of glucose 1-phosphate thymidylyltransferase from Aneurinibacillus thermoaerophilus complexed with TDP-glucose
Descriptor: 2'DEOXY-THYMIDINE-5'-DIPHOSPHO-ALPHA-D-GLUCOSE, Glucose-1-phosphate thymidylyltransferase, SULFATE ION
Authors:Chen, T.J, Chien, W.T, Lin, C.C, Wang, W.C.
Deposit date:2012-10-22
Release date:2013-10-23
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of glucose 1-phosphate thymidylyltransferase from Aneurinibacillus thermoaerophilus complexed with TDP-glucose
TO BE PUBLISHED
4HO3
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BU of 4ho3 by Molmil
Crystal structure of glucose 1-phosphate thymidylyltransferase from Aneurinibacillus thermoaerophilus complexed with thymidine triphosphate
Descriptor: Glucose-1-phosphate thymidylyltransferase, SULFATE ION, THYMIDINE-5'-TRIPHOSPHATE
Authors:Chen, T.J, Chien, W.T, Lin, C.C, Wang, W.C.
Deposit date:2012-10-22
Release date:2013-10-23
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of glucose 1-phosphate thymidylyltransferase from Aneurinibacillus thermoaerophilus complexed with thymidine triphosphate
TO BE PUBLISHED
4HO8
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BU of 4ho8 by Molmil
Crystal structure of glucose 1-phosphate thymidylyltransferase from Aneurinibacillus thermoaerophilus complexed with UDP-glucose and thymidine
Descriptor: Glucose-1-phosphate thymidylyltransferase, SULFATE ION, THYMIDINE, ...
Authors:Chen, T.J, Chien, W.T, Lin, C.C, Wang, W.C.
Deposit date:2012-10-22
Release date:2013-10-23
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal structure of glucose 1-phosphate thymidylyltransferase from Aneurinibacillus thermoaerophilus complexed with UDP-glucose and thymidine
TO BE PUBLISHED
4HO6
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Crystal structure of glucose 1-phosphate thymidylyltransferase from Aneurinibacillus thermoaerophilus complexed with UDP-glucose and UTP
Descriptor: Glucose-1-phosphate thymidylyltransferase, SULFATE ION, URIDINE 5'-TRIPHOSPHATE, ...
Authors:Chen, T.J, Chien, W.T, Lin, C.C, Wang, W.C.
Deposit date:2012-10-22
Release date:2013-10-23
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:Crystal structure of glucose 1-phosphate thymidylyltransferase from Aneurinibacillus thermoaerophilus complexed with UDP-glucose and UTP
TO BE PUBLISHED
4HOC
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BU of 4hoc by Molmil
Crystal structure of glucose 1-phosphate thymidylyltransferase from Aneurinibacillus thermoaerophilus complexed with UDP-N-acetylglucosamine
Descriptor: Glucose-1-phosphate thymidylyltransferase, SULFATE ION, URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE
Authors:Chen, T.J, Chien, W.T, Lin, C.C, Wang, W.C.
Deposit date:2012-10-22
Release date:2013-10-23
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of glucose 1-phosphate thymidylyltransferase from Aneurinibacillus thermoaerophilus complexed with UDP-N-acetylglucosamine
TO BE PUBLISHED
4HO2
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BU of 4ho2 by Molmil
Crystal structure of glucose 1-phosphate thymidylyltransferase from Aneurinibacillus thermoaerophilus complexed with thymidine
Descriptor: Glucose-1-phosphate thymidylyltransferase, SULFATE ION, THYMIDINE
Authors:Chen, T.J, Chien, W.T, Lin, C.C, Wang, W.C.
Deposit date:2012-10-22
Release date:2013-10-23
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:Crystal structure of glucose 1-phosphate thymidylyltransferase from Aneurinibacillus thermoaerophilus complexed with thymidine
TO BE PUBLISHED
4HO0
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BU of 4ho0 by Molmil
Crystal structure of glucose 1-phosphate thymidylyltransferase from Aneurinibacillus thermoaerophilus
Descriptor: Glucose-1-phosphate thymidylyltransferase, SULFATE ION
Authors:Chen, T.J, Chien, W.T, Lin, C.C, Wang, W.C.
Deposit date:2012-10-22
Release date:2013-10-23
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of glucose 1-phosphate thymidylyltransferase from Aneurinibacillus thermoaerophilus
TO BE PUBLISHED
4HO4
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BU of 4ho4 by Molmil
Crystal structure of glucose 1-phosphate thymidylyltransferase from Aneurinibacillus thermoaerophilus complexed with thymidine and glucose-1-phosphate
Descriptor: 1-O-phosphono-alpha-D-glucopyranose, Glucose-1-phosphate thymidylyltransferase, SULFATE ION, ...
Authors:Chen, T.J, Chien, W.T, Lin, C.C, Wang, W.C.
Deposit date:2012-10-22
Release date:2013-10-23
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.64 Å)
Cite:Crystal structure of glucose 1-phosphate thymidylyltransferase from Aneurinibacillus thermoaerophilus complexed with thymidine and glucose-1-phosphate
TO BE PUBLISHED
4HO9
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BU of 4ho9 by Molmil
Crystal structure of glucose 1-phosphate thymidylyltransferase from Aneurinibacillus thermoaerophilus complexed with UDP-galactose and UTP
Descriptor: GALACTOSE-URIDINE-5'-DIPHOSPHATE, Glucose-1-phosphate thymidylyltransferase, SULFATE ION, ...
Authors:Chen, T.J, Chien, W.T, Lin, C.C, Wang, W.C.
Deposit date:2012-10-22
Release date:2013-10-23
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of glucose 1-phosphate thymidylyltransferase from Aneurinibacillus thermoaerophilus complexed with UDP-galactose and UTP
TO BE PUBLISHED
7XPG
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BU of 7xpg by Molmil
Cryo-EM structure of the T=3 lake sinai virus 1 (delta-N48) virus-like capsid at pH 6.5
Descriptor: Capsid protein alpha, RNA (5'-R(P*UP*G)-3')
Authors:Chen, N.C, Wang, C.H, Chen, C.J, Yoshimura, M, Guan, H.H, Chuankhayan, P, Lin, C.C.
Deposit date:2022-05-04
Release date:2023-02-08
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (3.51 Å)
Cite:Structures of honeybee-infecting Lake Sinai virus reveal domain functions and capsid assembly with dynamic motions.
Nat Commun, 14, 2023
7XPE
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BU of 7xpe by Molmil
Cryo-EM structure of the T=4 lake sinai virus 2 virus-like capsid at pH 8.5
Descriptor: Capsid protein alpha
Authors:Chen, N.C, Wang, C.H, Chen, C.J, Yoshimura, M, Guan, H.H, Chuankhayan, P, Lin, C.C.
Deposit date:2022-05-04
Release date:2023-02-08
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (3.32 Å)
Cite:Structures of honeybee-infecting Lake Sinai virus reveal domain functions and capsid assembly with dynamic motions.
Nat Commun, 14, 2023
7XPD
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BU of 7xpd by Molmil
Cryo-EM structure of the T=3 lake sinai virus 2 virus-like capsid at pH 6.5
Descriptor: Capsid protein alpha
Authors:Chen, N.C, Wang, C.H, Chen, C.J, Yoshimura, M, Guan, H.H, Chuankhayan, P, Lin, C.C.
Deposit date:2022-05-04
Release date:2023-02-08
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (3.74 Å)
Cite:Structures of honeybee-infecting Lake Sinai virus reveal domain functions and capsid assembly with dynamic motions.
Nat Commun, 14, 2023
7XPF
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BU of 7xpf by Molmil
Cryo-EM structure of the T=3 lake sinai virus 2 virus-like capsid at pH 8.5
Descriptor: Capsid protein alpha
Authors:Chen, N.C, Wang, C.H, Chen, C.J, Yoshimura, M, Guan, H.H, Chuankhayan, P, Lin, C.C.
Deposit date:2022-05-04
Release date:2023-02-08
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (3.13 Å)
Cite:Structures of honeybee-infecting Lake Sinai virus reveal domain functions and capsid assembly with dynamic motions.
Nat Commun, 14, 2023
7CFW
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BU of 7cfw by Molmil
Crystal structure of the receiver domain of sensor histidine kinase PA1611 (PA1611REC) from Pseudomonas aeruginosa PAO1 with calcium ion coordinated in the active site cleft
Descriptor: CALCIUM ION, Histidine kinase
Authors:Chen, S.K, Guan, H.H, Wu, P.H, Lin, L.T, Wu, M.C, Chang, H.Y, Chen, N.C, Lin, C.C, Chuankhayan, P, Huang, Y.C, Lin, P.J, Chen, C.J.
Deposit date:2020-06-29
Release date:2020-11-04
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.31 Å)
Cite:Structural insights into the histidine-containing phospho-transfer protein and receiver domain of sensor histidine kinase suggest a complex model in the two-component regulatory system in Pseudomonas aeruginosa
Iucrj, 7, 2020
7CBA
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BU of 7cba by Molmil
Crystal structure of snake venom phosphodiesterase (PDE) from Taiwan cobra (Naja atra atra) in complex with isorhamnetin and citrate
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, CITRIC ACID, ...
Authors:Lin, I.J, Lin, C.C, Wu, W.G.
Deposit date:2020-06-11
Release date:2021-07-21
Method:X-RAY DIFFRACTION (2.901 Å)
Cite:Crystal structure of snake venom phosphodiesterase (PDE) from Taiwan cobra (Naja atra atra) in complex with isorhamnetin and citrate
To Be Published
7EXH
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BU of 7exh by Molmil
Crystal structure of D383A mutant from Arabidopsis thaliana complexed with Galactinol.
Descriptor: Probable galactinol--sucrose galactosyltransferase 6, galactinol
Authors:Chuankhayan, P, Guan, H.H, Lin, C.C, Chen, N.C, Huang, Y.C, Yoshimura, M, Nakagawa, A, Lee, R.H, Chen, C.J.
Deposit date:2021-05-27
Release date:2022-11-30
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.63 Å)
Cite:Structural insight into the hydrolase and synthase activities of an alkaline alpha-galactosidase from Arabidopsis from complexes with substrate/product.
Acta Crystallogr D Struct Biol, 79, 2023

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PDB entries from 2024-10-09

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