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PDB: 384 results

8HQI
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Crystal structure of SARS-Cov-2 main protease P132H mutant in complex with inhibitor YH-53
Descriptor: 3C-like proteinase nsp5, N-[(2S)-1-[[(2S)-1-(1,3-benzothiazol-2-yl)-1-oxidanylidene-3-[(3S)-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]-4-methyl-1-oxidanylidene-pentan-2-yl]-4-methoxy-1H-indole-2-carboxamide
Authors:Li, W.W, Zhang, J, Li, J.
Deposit date:2022-12-13
Release date:2023-12-20
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Crystal structure of SARS-Cov-2 main protease P132H mutant in complex with inhibitor YH-53
To Be Published
8HUX
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Crystal structure of SARS-Cov-2 main protease P132H mutant in complex with S217622
Descriptor: 3C-like proteinase nsp5, 6-[(6-chloranyl-2-methyl-indazol-5-yl)amino]-3-[(1-methyl-1,2,4-triazol-3-yl)methyl]-1-[[2,4,5-tris(fluoranyl)phenyl]methyl]-1,3,5-triazine-2,4-dione
Authors:Li, W.W, Zhang, J, Li, J.
Deposit date:2022-12-24
Release date:2023-06-21
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.74 Å)
Cite:Structural basis for the inhibition of coronaviral main proteases by ensitrelvir.
Structure, 31, 2023
8HVN
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Crystal structure of SARS-Cov-2 main protease P132H mutant in complex with PF07321332
Descriptor: (1R,2S,5S)-N-{(1E,2S)-1-imino-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-6,6-dimethyl-3-[3-methyl-N-(trifluoroacetyl)-L-valyl]-3-azabicyclo[3.1.0]hexane-2-carboxamide, 3C-like proteinase nsp5
Authors:Li, W.W, Zhang, J, Li, J.
Deposit date:2022-12-27
Release date:2023-12-27
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of SARS-Cov-2 main protease P132H mutant in complex with PF07321332
To Be Published
1TB6
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2.5A Crystal Structure of the Antithrombin-Thrombin-Heparin Ternary Complex
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 2,3,4,6-tetra-O-sulfonato-alpha-D-glucopyranose-(1-4)-2,3,6-tri-O-sulfo-alpha-D-glucopyranose-(1-4)-2,3,6-tri-O-sulfonato-beta-D-glucopyranose-(1-4)-2,3-di-O-methyl-6-O-sulfonato-alpha-D-glucopyranose-(1-4)-2,3,6-tri-O-methyl-beta-D-glucopyranose-(1-4)-2,3,6-tri-O-methyl-alpha-D-glucopyranose-(1-4)-2,3,6-tri-O-methyl-beta-D-glucopyranose-(1-4)-2,3,6-tri-O-methyl-alpha-D-glucopyranose-(1-4)-2,3,6-tri-O-methyl-beta-D-glucopyranose-(1-4)-2,3,6-tri-O-methyl-alpha-D-glucopyranose-(1-4)-2,3,6-tri-O-methyl-beta-D-glucopyranose-(1-4)-2,3-di-O-methyl-6-O-sulfonato-alpha-D-glucopyranose-(1-4)-2,3-di-O-methyl-beta-D-glucopyranuronic acid-(1-4)-2,3,6-tri-O-sulfo-alpha-D-glucopyranose-(1-4)-2,3-di-O-methyl-alpha-L-idopyranuronic acid-(1-4)-methyl 3-O-methyl-2,6-di-O-sulfo-alpha-D-glucopyranoside, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Li, W, Johnson, D.J, Esmon, C.T, Huntington, J.A.
Deposit date:2004-05-19
Release date:2004-08-17
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure of the antithrombin-thrombin-heparin ternary complex reveals the antithrombotic mechanism of heparin.
Nat.Struct.Mol.Biol., 11, 2004
7E2G
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Cryo-EM structure of hDisp1NNN-3C
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CHOLESTEROL HEMISUCCINATE, Protein dispatched homolog 1,Protein dispatched homolog 1
Authors:Li, W, Wang, L, Gong, X.
Deposit date:2021-02-05
Release date:2021-12-08
Method:ELECTRON MICROSCOPY (3.61 Å)
Cite:Structural insights into proteolytic activation of the human Dispatched1 transporter for Hedgehog morphogen release.
Nat Commun, 12, 2021
7E2H
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Cryo-EM structure of hDisp1NNN-3C-Cleavage
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CHOLESTEROL HEMISUCCINATE, Protein dispatched homolog 1
Authors:Li, W, Wang, L, Gong, X.
Deposit date:2021-02-05
Release date:2021-12-08
Method:ELECTRON MICROSCOPY (3.68 Å)
Cite:Structural insights into proteolytic activation of the human Dispatched1 transporter for Hedgehog morphogen release.
Nat Commun, 12, 2021
5C1Q
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Serine/threonine-protein kinase pim-1
Descriptor: 3-methoxy[1]benzothieno[2,3-c]quinolin-6(5H)-one, Serine/threonine-protein kinase pim-1
Authors:Li, W, Wan, X, Huang, N.
Deposit date:2015-06-15
Release date:2015-12-16
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (3 Å)
Cite:Serine/threonine-protein kinase pim-1
To Be Published
7E2I
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BU of 7e2i by Molmil
Cryo-EM structure of hDisp1NNN-ShhN
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CHOLESTEROL HEMISUCCINATE, Protein dispatched homolog 1, ...
Authors:Li, W, Wang, L, Gong, X.
Deposit date:2021-02-05
Release date:2021-12-08
Method:ELECTRON MICROSCOPY (4.07 Å)
Cite:Structural insights into proteolytic activation of the human Dispatched1 transporter for Hedgehog morphogen release.
Nat Commun, 12, 2021
3DY0
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BU of 3dy0 by Molmil
Crystal Structure of Cleaved PCI Bound to Heparin
Descriptor: 2-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose-(1-4)-2-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose-(1-4)-2-O-sulfo-alpha-L-idopyranuronic acid, C-terminus Plasma serine protease inhibitor, GLYCEROL, ...
Authors:Li, W, Huntington, J.A.
Deposit date:2008-07-25
Release date:2008-10-28
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:The heparin binding site of protein C inhibitor is protease-dependent.
J.Biol.Chem., 283, 2008
4MPL
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Crystal structure of BMP9 at 1.90 Angstrom
Descriptor: Growth/differentiation factor 2
Authors:Li, W, Morrell, N.W, Wei, Z.
Deposit date:2013-09-13
Release date:2014-09-17
Last modified:2021-06-02
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Regulation of Bone Morphogenetic Protein 9 (BMP9) by Redox-dependent Proteolysis.
J.Biol.Chem., 289, 2014
4OD4
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BU of 4od4 by Molmil
Apo structure of a UbiA homolog from Aeropyrum pernix K1
Descriptor: 4-hydroxybenzoate octaprenyltransferase
Authors:Li, W, Cheng, W.
Deposit date:2014-01-09
Release date:2014-03-19
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (3.301 Å)
Cite:Structural insights into ubiquinone biosynthesis in membranes.
Science, 343, 2014
2HI9
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BU of 2hi9 by Molmil
Crystal Structure of human native protein C inhibitor
Descriptor: CITRIC ACID, GLYCEROL, Plasma serine protease inhibitor
Authors:Li, W, Adams, T.E, Huntington, J.A.
Deposit date:2006-06-29
Release date:2007-03-13
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure of native protein C inhibitor provides insight into its multiple functions.
J.Biol.Chem., 282, 2007
3TKJ
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BU of 3tkj by Molmil
Crystal Structure of Human Asparaginase-like Protein 1 Thr168Ala
Descriptor: L-asparaginase, SODIUM ION, SULFATE ION, ...
Authors:Li, W.Z, Yogesha, S.D, Liu, J, Zhang, Y.
Deposit date:2011-08-26
Release date:2012-10-10
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Uncoupling Intramolecular Processing and Substrate Hydrolysis in the N-Terminal Nucleophile Hydrolase hASRGL1 by Circular Permutation.
Acs Chem.Biol., 7, 2012
5Y6R
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BU of 5y6r by Molmil
Crystal structure of CSFV NS5B
Descriptor: GLYCEROL, Genome polyprotein, SULFATE ION
Authors:Li, W, Wu, B.
Deposit date:2017-08-13
Release date:2018-05-02
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.01 Å)
Cite:Crystal Structure of Classical Swine Fever Virus NS5B Reveals a Novel N-Terminal Domain
J. Virol., 92, 2018
3IZP
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BU of 3izp by Molmil
Conformation of EF-G during translocation
Descriptor: Elongation factor G
Authors:Li, W, Trabuco, L.G, Schulten, K, Frank, J.
Deposit date:2010-11-15
Release date:2011-03-16
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY
Cite:Molecular dynamics of EF-G during translocation.
Proteins, 79, 2011
3KP9
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Structure of a bacterial homolog of vitamin K epoxide reductase
Descriptor: MERCURY (II) ION, UBIQUINONE-10, VKORC1/thioredoxin domain protein
Authors:Li, W, Schulman, S, Dutton, R.J, Boyd, D, Beckwith, J, Rapoport, T.A.
Deposit date:2009-11-16
Release date:2010-02-09
Last modified:2021-10-13
Method:X-RAY DIFFRACTION (3.6 Å)
Cite:Structure of a bacterial homologue of vitamin K epoxide reductase.
Nature, 463, 2010
3KP8
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BU of 3kp8 by Molmil
The thioredoxin-like domain of a VKOR homolog from Synechococcus sp.
Descriptor: VKORC1/thioredoxin domain protein
Authors:Li, W, Schulman, S, Dutton, R.J, Boyd, D, Beckwith, J, Rapoport, T.A.
Deposit date:2009-11-15
Release date:2010-03-02
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.66 Å)
Cite:Structure of a bacterial homologue of vitamin K epoxide reductase.
Nature, 463, 2010
4TNS
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BU of 4tns by Molmil
Structure of Pin1 PPIase domain bound with all-trans retinoic acid
Descriptor: Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1, RETINOIC ACID
Authors:Li, W.Z, Zhang, Y.
Deposit date:2014-06-04
Release date:2015-04-08
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.33 Å)
Cite:Structure of Pin1 PPIase domain bound with all-trans retinoic acid
To Be Published
3TJT
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BU of 3tjt by Molmil
Crystal Structure Analysis of the superoxide dismutase from Clostridium difficile
Descriptor: FE (III) ION, Superoxide dismutase
Authors:Li, W, Lei, C, Ying, T.L, Wang, H.F, Tan, X.S.
Deposit date:2011-08-25
Release date:2012-08-29
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.801 Å)
Cite:Crystal Structure of the superoxide dismutase from Clostridium difficile
To be Published
4JZ2
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BU of 4jz2 by Molmil
Crystal structure of Co ion substituted SOD2 from Clostridium difficile
Descriptor: COBALT (II) ION, Superoxide dismutase
Authors:Li, W, Ying, T.L, Wang, C.L, Zhao, Y, Wang, H.F, Tan, X.S.
Deposit date:2013-04-02
Release date:2014-04-02
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal structure of Co ion substituted SOD2 from Clostridium difficile
To be Published
6JCI
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BU of 6jci by Molmil
Crystal structure of Prolyl Endopeptidase from Haliotis discus hannai with SUAM-14746
Descriptor: 1-[4-oxidanyl-2-(1,3-thiazolidin-3-ylcarbonyl)pyrrolidin-1-yl]-4-[2-[(~{E})-2-phenylethenyl]phenoxy]butan-1-one, GLYCEROL, Prolyl endopeptidase
Authors:Li, W, Cao, M.
Deposit date:2019-01-28
Release date:2020-02-05
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.493 Å)
Cite:Crystal structure of Haliotis discus hannai Prolyl Endopeptidase
To Be Published
4JYY
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Crystal structure of the azide and iron substituted Clostrium difficile SOD2 complex
Descriptor: AZIDE ION, FE (III) ION, Superoxide dismutase
Authors:Li, W, Ying, T.L, Wang, C.L, Zhao, Y, Wang, H.F, Tan, X.S.
Deposit date:2013-04-01
Release date:2014-04-02
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.101 Å)
Cite:Crystal structure of the azide and iron substituted Clostrium difficile SOD2 complex
To be Published
7XB1
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BU of 7xb1 by Molmil
Crystal structure of Omicron BA.3 RBD complexed with hACE2
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Angiotensin-converting enzyme 2, ...
Authors:Li, W, Meng, Y, Liao, H.
Deposit date:2022-03-19
Release date:2022-07-06
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural basis of human ACE2 higher binding affinity to currently circulating Omicron SARS-CoV-2 sub-variants BA.2 and BA.1.1.
Cell, 185, 2022
4JZG
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Crystal structure of a single cambialistic SOD2 occupied by Manganese ion from Clostridium difficile
Descriptor: MANGANESE (II) ION, Superoxide dismutase
Authors:Li, W, Wang, C.L, Zhao, Y, Wang, H.F, Tan, S.X.
Deposit date:2013-04-02
Release date:2014-04-02
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.321 Å)
Cite:Crystal structure of a single cambialistic SOD2 occupied by Manganese ion from Clostridium difficile
To be Published
4N0G
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Crystal Structure of PYL13-PP2CA complex
Descriptor: Abscisic acid receptor PYL13, MAGNESIUM ION, Protein phosphatase 2C 37, ...
Authors:Li, W, Wang, L, Sheng, X, Yan, C, Zhou, R, Hang, J, Yin, P, Yan, N.
Deposit date:2013-10-01
Release date:2013-11-13
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.382 Å)
Cite:Molecular basis for the selective and ABA-independent inhibition of PP2CA by PYL13
Cell Res., 23, 2013

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PDB entries from 2024-08-21

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