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PDB: 812 results

8V93
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BU of 8v93 by Molmil
Cryo-EM structure of E. coli FimH lectin domain bound to Fabs 329-2 and 454-3
Descriptor: Fab 329-2 heavy chain, Fab 329-2 light chain, Fab 454-3 heavy chain, ...
Authors:Lees, J.A, Han, S.
Deposit date:2023-12-07
Release date:2024-12-18
Method:ELECTRON MICROSCOPY (3.12 Å)
Cite:Structure-Based Engineering of a Highly Immunogenic, Conformationally Stabilized FimH Antigen for a Urinary Tract Infection Vaccine
To Be Published
9D6F
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BU of 9d6f by Molmil
Cryo-EM structure of E. coli FimH lectin domain bound to Fabs 440-2 and 454-3
Descriptor: 440-2 Fab heavy chain, 440-2 Fab light chain, 445-3 Fab heavy chain, ...
Authors:Lees, J.A, Han, S.
Deposit date:2024-08-15
Release date:2025-02-05
Method:ELECTRON MICROSCOPY (4.24 Å)
Cite:Structure-Based Design of a Highly Immunogenic, Conformationally Stabilized FimH Antigen for a Urinary Tract Infection Vaccine
To Be Published
8TB7
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BU of 8tb7 by Molmil
Cryo-EM Structure of GPR61-
Descriptor: 6-{[(3,5-difluoropyridin-4-yl)methyl]amino}-N-(4-ethoxy-6-methylpyrimidin-2-yl)-2-methoxy-N-(2-methoxyethyl)pyridine-3-sulfonamide, Fab hinge-binding nanobody, Fab24 BAK5 heavy chain, ...
Authors:Lees, J.A, Dias, J.M, Han, S.
Deposit date:2023-06-28
Release date:2023-10-04
Last modified:2024-10-30
Method:ELECTRON MICROSCOPY (2.94 Å)
Cite:An inverse agonist of orphan receptor GPR61 acts by a G protein-competitive allosteric mechanism.
Nat Commun, 14, 2023
8TB0
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BU of 8tb0 by Molmil
Cryo-EM Structure of GPR61-G protein complex stabilized by scFv16
Descriptor: GPR61 fused to dominant negative G alpha S/I N18 chimera, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, ...
Authors:Lees, J.A, Dias, J.M, Han, S.
Deposit date:2023-06-28
Release date:2023-10-04
Last modified:2024-11-20
Method:ELECTRON MICROSCOPY (3.47 Å)
Cite:An inverse agonist of orphan receptor GPR61 acts by a G protein-competitive allosteric mechanism.
Nat Commun, 14, 2023
7UJA
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BU of 7uja by Molmil
Cryo-EM structure of Human respiratory syncytial virus F variant (construct pXCS847A)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, AM14 Fab heavy chain, AM14 Fab light chain, ...
Authors:Lees, J.A, Ammirati, M, Han, S.
Deposit date:2022-03-30
Release date:2023-04-19
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Rational design of a highly immunogenic prefusion-stabilized F glycoprotein antigen for a respiratory syncytial virus vaccine.
Sci Transl Med, 15, 2023
6BQ1
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BU of 6bq1 by Molmil
Human PI4KIIIa lipid kinase complex
Descriptor: 5-{2-amino-1-[4-(morpholin-4-yl)phenyl]-1H-benzimidazol-6-yl}-N-(2-fluorophenyl)-2-methoxypyridine-3-sulfonamide, Phosphatidylinositol 4-kinase III alpha (PI4KA), Protein FAM126A, ...
Authors:Lees, J.A, Zhang, Y, Oh, M, Schauder, C.M, Yu, X, Baskin, J, Dobbs, K, Notarangelo, L.D, Camilli, P.D, Walz, T, Reinisch, K.M.
Deposit date:2017-11-27
Release date:2017-12-13
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Architecture of the human PI4KIII alpha lipid kinase complex.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5TOD
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BU of 5tod by Molmil
Transmembrane protein 24 SMP domain
Descriptor: Transmembrane protein 24
Authors:Lees, J.A, Reinisch, K.M.
Deposit date:2016-10-17
Release date:2017-03-01
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.96 Å)
Cite:Lipid transport by TMEM24 at ER-plasma membrane contacts regulates pulsatile insulin secretion.
Science, 355, 2017
7L7K
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BU of 7l7k by Molmil
Cryo-EM structure of protein encoded by vaccine candidate BNT162b2
Descriptor: Spike glycoprotein
Authors:Lees, J.A, Han, S.
Deposit date:2020-12-28
Release date:2021-02-24
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (3.29 Å)
Cite:BNT162b vaccines protect rhesus macaques from SARS-CoV-2.
Nature, 592, 2021
7L7F
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BU of 7l7f by Molmil
Cryo-EM structure of human ACE2 receptor bound to protein encoded by vaccine candidate BNT162b1
Descriptor: Angiotensin-converting enzyme 2, Spike glycoprotein, Envelope glycoprotein fusion
Authors:Lees, J.A, Han, S.
Deposit date:2020-12-28
Release date:2021-02-24
Last modified:2024-11-20
Method:ELECTRON MICROSCOPY (3.24 Å)
Cite:BNT162b vaccines protect rhesus macaques from SARS-CoV-2.
Nature, 592, 2021
7K2V
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BU of 7k2v by Molmil
PIKfyve/Fig4/Vac14 complex centered on PIKfyve - map2
Descriptor: 1-phosphatidylinositol 3-phosphate 5-kinase
Authors:Lees, J.A, Reinisch, K.M, Li, P.
Deposit date:2020-09-09
Release date:2020-10-21
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (6.6 Å)
Cite:Insights into Lysosomal PI(3,5)P 2 Homeostasis from a Structural-Biochemical Analysis of the PIKfyve Lipid Kinase Complex.
Mol.Cell, 80, 2020
7K1W
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BU of 7k1w by Molmil
PIKfyve/Fig4/Vac14 complex centered on Fig4 - map3
Descriptor: Fig4 Sac homology model
Authors:Lees, J.A, Reinisch, K.M, Li, P.
Deposit date:2020-09-08
Release date:2020-10-21
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (5.1 Å)
Cite:Insights into Lysosomal PI(3,5)P 2 Homeostasis from a Structural-Biochemical Analysis of the PIKfyve Lipid Kinase Complex.
Mol.Cell, 80, 2020
7K1Y
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BU of 7k1y by Molmil
PIKfyve/Fig4/Vac14 complex centered on Vac14 - map1
Descriptor: Vac14
Authors:Lees, J.A, Reinisch, K.M, Li, P.
Deposit date:2020-09-08
Release date:2020-10-21
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (5.25 Å)
Cite:Insights into Lysosomal PI(3,5)P 2 Homeostasis from a Structural-Biochemical Analysis of the PIKfyve Lipid Kinase Complex.
Mol.Cell, 80, 2020
9J8E
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BU of 9j8e by Molmil
Structural insights into BirA from Haemophilus influenzae, a bifunctional protein as a biotin protein ligase and a transcriptional repressor
Descriptor: BIOTINYL-5-AMP, Bifunctional ligase/repressor BirA
Authors:Lee, J.Y, Jeong, K.H, Son, S.B, Ko, J.H.
Deposit date:2024-08-21
Release date:2024-09-11
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Structural insights into BirA from Haemophilus influenzae, a bifunctional protein as a biotin protein ligase and a transcriptional repressor.
Biochem.Biophys.Res.Commun., 733, 2024
9J8F
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BU of 9j8f by Molmil
Structural insights into BirA from Haemophilus influenzae, a bifunctional protein as a biotin protein ligase and a transcriptional repressor
Descriptor: 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL, Bifunctional ligase/repressor BirA, PENTAETHYLENE GLYCOL
Authors:Lee, J.Y, Jeong, K.H, Son, S.B, Ko, J.H.
Deposit date:2024-08-21
Release date:2024-09-11
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Structural insights into BirA from Haemophilus influenzae, a bifunctional protein as a biotin protein ligase and a transcriptional repressor.
Biochem.Biophys.Res.Commun., 733, 2024
9KOI
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BU of 9koi by Molmil
Crystal structure of ExaC, an NAD+-dependent aldehyde dehydrogenase, from Pseudomonas aeruginosa
Descriptor: NAD+ dependent aldehyde dehydrogenase ExaC
Authors:Lee, J.Y, Ko, J.H, Jeong, K.H, Son, S.B.
Deposit date:2024-11-20
Release date:2024-12-11
Last modified:2025-01-29
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural analysis of ExaC, an NAD + -dependent aldehyde dehydrogenase, from Pseudomonas aeruginosa.
Biochem.Biophys.Res.Commun., 742, 2025
9KOK
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BU of 9kok by Molmil
Crystal structure of ExaC, an NAD+-dependent aldehyde dehydrogenase, from Pseudomonas aeruginosa
Descriptor: GLYCEROL, MAGNESIUM ION, NAD+ dependent aldehyde dehydrogenase ExaC, ...
Authors:Lee, J.Y, Ko, J.H, Jeong, K.H, Son, S.B.
Deposit date:2024-11-20
Release date:2025-01-29
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural analysis of ExaC, an NAD + -dependent aldehyde dehydrogenase, from Pseudomonas aeruginosa.
Biochem.Biophys.Res.Commun., 742, 2025
2R64
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BU of 2r64 by Molmil
Crystal structure of a 3-aminoindazole compound with CDK2
Descriptor: Cell division protein kinase 2, N-[5-(1,1-DIOXIDOISOTHIAZOLIDIN-2-YL)-1H-INDAZOL-3-YL]-2-(4-PIPERIDIN-1-YLPHENYL)ACETAMIDE
Authors:Lee, J, Choi, H, Kim, K.H, Jeong, S, Park, J.W, Baek, C.S, Lee, S.H.
Deposit date:2007-09-05
Release date:2008-09-09
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Synthesis and biological evaluation of 3,5-diaminoindazoles as cyclin-dependent kinase inhibitors.
Bioorg.Med.Chem.Lett., 18, 2008
5WQ0
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BU of 5wq0 by Molmil
Receiver domain of Spo0A from Paenisporosarcina sp. TG-14
Descriptor: MAGNESIUM ION, Stage 0 sporulation protein
Authors:Lee, J.H, Lee, C.W.
Deposit date:2016-11-22
Release date:2017-03-22
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.604 Å)
Cite:Crystal structure of the inactive state of the receiver domain of Spo0A from Paenisporosarcina sp. TG-14, a psychrophilic bacterium isolated from an Antarctic glacier
J. Microbiol., 55, 2017
1JYS
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BU of 1jys by Molmil
Crystal Structure of E. coli MTA/AdoHcy Nucleosidase
Descriptor: ADENINE, MTA/SAH nucleosidase
Authors:Lee, J.E, Cornell, K.A, Riscoe, M.K, Howell, P.L.
Deposit date:2001-09-13
Release date:2002-10-01
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure of E. coli 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase reveals similarity to the purine nucleoside phosphorylases.
Structure, 9, 2001
4G4E
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BU of 4g4e by Molmil
Crystal structure of the L88A mutant of HslV from Escherichia coli
Descriptor: ATP-dependent protease subunit HslV
Authors:Lee, J.W, Park, E, Yoo, H.M, Ha, B.H, An, J.Y, Jeon, Y.J, Seol, J.H, Eom, S.H, Chung, C.H.
Deposit date:2012-07-16
Release date:2013-06-12
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.888 Å)
Cite:Structural Alteration in the Pore Motif of the Bacterial 20S Proteasome Homolog HslV Leads to Uncontrolled Protein Degradation
J.Mol.Biol., 425, 2013
3UYU
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BU of 3uyu by Molmil
Structural basis for the antifreeze activity of an ice-binding protein (LeIBP) from Arctic yeast
Descriptor: Antifreeze protein, GLYCEROL
Authors:Lee, J.H, Park, A.K, Do, H, Park, K.S, Moh, S.H, Chi, Y.M, Kim, H.J.
Deposit date:2011-12-06
Release date:2012-02-15
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (1.57 Å)
Cite:Structural basis for the antifreeze activity of an ice-binding protein from an Arctic yeast.
J.Biol.Chem., 2012
7C4X
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BU of 7c4x by Molmil
Crystal structure of germination protease from the spore-forming bacterium Paenisporosarcina sp. TG-20 in its inactive form
Descriptor: germination protease
Authors:Lee, J.H, Lee, C.W.
Deposit date:2020-05-18
Release date:2021-03-31
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural insights into the psychrophilic germinal protease PaGPR and its autoinhibitory loop.
J.Microbiol, 58, 2020
6KTB
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BU of 6ktb by Molmil
Crystal structure of B. halodurans MntR in apo form
Descriptor: HTH-type transcriptional regulator MntR, MAGNESIUM ION, MANGANESE (II) ION, ...
Authors:Lee, J.Y, Lee, M.Y.
Deposit date:2019-08-26
Release date:2019-12-04
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural analysis of the manganese transport regulator MntR from Bacillus halodurans in apo and manganese bound forms.
Plos One, 14, 2019
5AWN
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BU of 5awn by Molmil
Crystal structure of Human anti-HIV-1 broadly neutralizing antibody 3BC176 Fab
Descriptor: Heavy chain of 3BC176 Fab, Light chain of 3BC176 Fab
Authors:Lee, J.H, Wilson, I.A, Ward, A.B.
Deposit date:2015-07-06
Release date:2015-11-11
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.887 Å)
Cite:Antibodies to a conformational epitope on gp41 neutralize HIV-1 by destabilizing the Env spike.
Nat Commun, 6, 2015
8VQ9
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BU of 8vq9 by Molmil
Prefusion stabilized structure of the SARS-CoV-2 fusion machinery
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike protein S2
Authors:Lee, J, Veesler, D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2024-01-18
Release date:2024-07-24
Last modified:2024-11-27
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:A broadly generalizable stabilization strategy for sarbecovirus fusion machinery vaccines.
Nat Commun, 15, 2024

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